Wall clock time and date at job start Tue Mar 31 2020 17:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38629 * 120.75171 * 2 1 4 4 C 1.38566 * 119.35104 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.54904 * 179.97438 * 4 3 2 6 6 N 1.31527 * 120.90130 * 359.97438 * 4 3 2 7 7 C 1.32714 * 121.64295 * 0.02562 * 6 4 3 8 8 C 1.48172 * 119.72095 * 180.02562 * 7 6 4 9 9 O 1.21513 * 119.99661 * 188.00303 * 8 7 6 10 10 N 1.34773 * 119.99656 * 8.00365 * 8 7 6 11 11 C 1.47515 * 118.75317 * 178.96077 * 10 8 7 12 12 C 1.53571 * 111.02858 * 138.34720 * 11 10 8 13 13 C 1.51537 * 109.58068 * 320.02104 * 12 11 10 14 14 O 1.42155 * 108.74868 * 91.40047 * 13 12 11 15 15 C 1.38010 * 119.44169 * 272.76578 * 14 13 12 16 16 H 1.08998 * 109.47422 * 303.42949 * 15 14 13 17 17 C 1.53009 * 109.46755 * 183.43505 * 15 14 13 18 18 N 1.46495 * 109.46886 * 64.99441 * 17 15 14 19 19 C 1.36941 * 119.99665 * 179.72165 * 18 17 15 20 20 H 1.07998 * 120.00369 * 0.27570 * 19 18 17 21 21 C 1.38813 * 119.99869 * 180.27040 * 19 18 17 22 22 N 1.31624 * 120.00040 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00005 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46839 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47063 * 120.00295 * 23 21 19 26 26 H 1.48506 * 109.46966 * 240.00263 * 23 21 19 27 27 C 1.45121 * 118.76257 * 358.94427 * 10 8 7 28 28 C 1.38587 * 120.76000 * 180.27286 * 2 1 3 29 29 H 1.08999 * 109.47204 * 90.00140 * 1 2 3 30 30 H 1.09001 * 109.47146 * 209.99861 * 1 2 3 31 31 H 1.09000 * 109.48068 * 329.99680 * 1 2 3 32 32 H 1.08002 * 120.32684 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.46953 * 269.98535 * 5 4 3 34 34 H 1.09004 * 109.46781 * 29.98176 * 5 4 3 35 35 H 1.08996 * 109.47003 * 149.97992 * 5 4 3 36 36 H 1.09005 * 109.16904 * 258.74604 * 11 10 8 37 37 H 1.09000 * 109.16838 * 17.94723 * 11 10 8 38 38 H 1.09000 * 109.45415 * 80.05862 * 12 11 10 39 39 H 1.09000 * 109.44917 * 199.98760 * 12 11 10 40 40 H 1.08999 * 109.58887 * 211.17778 * 13 12 11 41 41 H 1.08999 * 109.59011 * 331.62395 * 13 12 11 42 42 H 1.08998 * 109.46922 * 304.98874 * 17 15 14 43 43 H 1.09004 * 109.46454 * 184.99177 * 17 15 14 44 44 H 0.97002 * 120.00515 * 359.97438 * 18 17 15 45 45 H 0.96998 * 119.99869 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.46325 * 149.28520 * 27 10 8 47 47 H 1.08996 * 109.46126 * 29.32174 * 27 10 8 48 48 H 1.08000 * 120.47061 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2157 1.1914 0.0000 4 6 3.6010 1.1575 0.0005 5 6 4.3760 2.4499 0.0000 6 7 4.2487 0.0127 0.0016 7 6 3.6082 -1.1496 0.0016 8 6 4.3807 -2.4140 0.0033 9 8 3.8083 -3.4758 -0.1431 10 7 5.7181 -2.3863 0.1674 11 6 6.4571 -3.6628 0.1879 12 6 7.7659 -3.5547 -0.6083 13 6 7.5300 -2.7420 -1.8653 14 8 7.8042 -1.3757 -1.5843 15 6 6.8032 -0.5739 -1.0746 16 1 5.9461 -0.5905 -1.7478 17 6 7.3180 0.8607 -0.9398 18 7 7.6091 1.4020 -2.2696 19 6 8.0797 2.6814 -2.4001 20 1 8.2404 3.2898 -1.5224 21 6 8.3502 3.1962 -3.6605 22 7 8.1540 2.4548 -4.7302 23 14 8.9928 4.9412 -3.8384 24 1 9.1254 5.5592 -2.4947 25 1 10.3195 4.9145 -4.5048 26 1 8.0434 5.7371 -4.6573 27 6 6.3768 -1.1019 0.3168 28 6 2.2157 -1.1909 -0.0057 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3635 0.8899 0.5138 32 1 1.6934 2.1367 0.0004 33 1 4.5635 2.7607 -1.0278 34 1 3.7992 3.2197 0.5128 35 1 5.3258 2.3043 0.5145 36 1 6.6870 -3.9268 1.2202 37 1 5.8352 -4.4435 -0.2501 38 1 8.5236 -3.0654 0.0036 39 1 8.1086 -4.5530 -0.8804 40 1 8.1925 -3.0924 -2.6568 41 1 6.4920 -2.8491 -2.1804 42 1 8.2271 0.8655 -0.3385 43 1 6.5588 1.4750 -0.4556 44 1 7.4651 0.8554 -3.0580 45 1 8.3427 2.8147 -5.6110 46 1 7.2585 -1.2170 0.9473 47 1 5.6899 -0.3931 0.7793 48 1 1.6959 -2.1376 -0.0106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200859686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:33 Heat of formation + Delta-G solvation = -6.879164 kcal Electronic energy + Delta-G solvation = -30419.686793 eV Core-core repulsion = 26476.079329 eV Total energy + Delta-G solvation = -3943.607464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18330 -39.66767 -38.34936 -35.37163 -34.90727 -34.13296 -33.24874 -32.42207 -30.83102 -28.65740 -28.15315 -27.63447 -26.66942 -25.31901 -24.09717 -22.53535 -21.46373 -21.18622 -20.78983 -19.42599 -17.52384 -17.13250 -16.82933 -16.31796 -16.17690 -16.07601 -15.56704 -14.97967 -14.96156 -14.41628 -14.30087 -13.83336 -13.74491 -13.42911 -13.39025 -13.15693 -13.02723 -12.97159 -12.85011 -12.52668 -12.29616 -12.14095 -12.02766 -11.90861 -11.64458 -11.45374 -11.16552 -10.85187 -10.77809 -10.65602 -10.29255 -10.14045 -9.91316 -9.64894 -9.63557 -9.26871 -9.07252 -9.00318 -8.78299 -8.33774 -6.78318 -5.66525 -2.93705 0.58218 1.07561 2.65604 2.89084 3.47412 3.52630 3.55334 3.70768 3.95656 4.14351 4.40288 4.44929 4.66286 4.82388 4.86380 4.91648 4.95510 5.06741 5.20379 5.25797 5.27829 5.39683 5.46676 5.50305 5.53780 5.56301 5.64411 5.66541 5.69647 5.75333 5.80489 5.85939 5.94056 6.00614 6.07920 6.16280 6.18848 6.26900 6.32420 6.43064 6.54943 6.70920 6.86310 6.92189 7.29676 7.69835 7.76881 8.08831 8.19068 8.51899 9.63223 10.24403 10.59602 11.56559 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009918 B = 0.004611 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.461146 B = 6070.460060 C = 8279.258359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.047 4.047 3 C -0.152 4.152 4 C 0.138 3.862 5 C -0.112 4.112 6 N -0.446 5.446 7 C 0.085 3.915 8 C 0.566 3.434 9 O -0.543 6.543 10 N -0.586 5.586 11 C 0.108 3.892 12 C -0.164 4.164 13 C 0.075 3.925 14 O -0.374 6.374 15 C 0.101 3.899 16 H 0.047 0.953 17 C 0.165 3.835 18 N -0.726 5.726 19 C -0.231 4.231 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.932 5.932 23 Si 0.903 3.097 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.052 3.948 28 C -0.124 4.124 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.139 0.861 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.020 0.980 43 H 0.046 0.954 44 H 0.385 0.615 45 H 0.252 0.748 46 H 0.070 0.930 47 H 0.142 0.858 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.563 -8.236 13.241 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.054 4.054 3 C -0.172 4.172 4 C 0.000 4.000 5 C -0.169 4.169 6 N -0.160 5.160 7 C -0.052 4.052 8 C 0.353 3.647 9 O -0.420 6.420 10 N -0.316 5.316 11 C -0.014 4.014 12 C -0.202 4.202 13 C -0.002 4.002 14 O -0.292 6.292 15 C 0.041 3.959 16 H 0.065 0.935 17 C 0.037 3.963 18 N -0.370 5.370 19 C -0.363 4.363 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.581 5.581 23 Si 0.734 3.266 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.221 1.221 27 C -0.071 4.071 28 C -0.145 4.145 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.219 0.781 45 H 0.062 0.938 46 H 0.088 0.912 47 H 0.158 0.842 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.690 -8.605 13.202 19.622 hybrid contribution -0.697 0.569 -0.477 1.018 sum -12.387 -8.036 12.725 19.492 Atomic orbital electron populations 1.20820 0.89807 1.03380 1.03148 1.20310 0.96981 0.92539 0.95600 1.22096 0.94889 0.98831 1.01381 1.21618 0.91216 0.94323 0.92879 1.20942 1.00130 0.90871 1.04930 1.67946 1.38368 0.97629 1.12014 1.21050 0.91619 0.92140 1.00408 1.18073 0.82246 0.87497 0.76879 1.90737 1.69846 1.30596 1.50858 1.47829 1.06104 1.08046 1.69666 1.21889 0.93458 0.85532 1.00518 1.22484 0.97288 1.01767 0.98684 1.22080 1.00497 0.82042 0.95615 1.86410 1.39572 1.19996 1.83213 1.22114 0.90166 0.91419 0.92203 0.93526 1.20726 0.97295 0.88196 0.90077 1.42255 1.78943 1.13839 1.01931 1.19251 1.35070 0.89711 0.92252 0.91219 1.24709 1.02765 0.98096 0.95551 1.69691 1.55254 1.35967 0.97220 0.86173 0.78249 0.84781 0.77347 1.20600 1.22028 1.22088 1.23519 0.99355 0.84349 0.99921 1.21864 0.93576 0.99359 0.99691 0.90281 0.90907 0.90844 0.84361 0.88618 0.90850 0.89586 0.91634 0.89205 0.90104 0.89822 0.89461 0.93673 0.96180 0.93708 0.78127 0.93758 0.91190 0.84182 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.06 36.00 0.36 -0.45 16 2 C -0.05 -0.48 5.91 -104.35 -0.62 -1.10 16 3 C -0.15 -1.62 9.45 -39.32 -0.37 -1.99 16 4 C 0.14 1.77 6.78 -82.60 -0.56 1.21 16 5 C -0.11 -1.35 9.21 36.01 0.33 -1.02 16 6 N -0.45 -6.43 4.76 -6.06 -0.03 -6.46 16 7 C 0.09 1.24 6.59 -83.01 -0.55 0.70 16 8 C 0.57 8.90 7.62 -12.18 -0.09 8.80 16 9 O -0.54 -9.39 15.65 5.35 0.08 -9.30 16 10 N -0.59 -8.54 2.19 -173.46 -0.38 -8.92 16 11 C 0.11 1.34 6.16 -3.19 -0.02 1.32 16 12 C -0.16 -1.97 5.79 -27.17 -0.16 -2.13 16 13 C 0.07 1.14 6.38 36.42 0.23 1.37 16 14 O -0.37 -7.10 9.38 -26.52 -0.25 -7.35 16 15 C 0.10 1.84 2.00 -25.77 -0.05 1.78 16 16 H 0.05 0.95 7.63 -51.93 -0.40 0.56 16 17 C 0.16 3.39 5.92 -4.04 -0.02 3.36 16 18 N -0.73 -18.75 5.54 -59.91 -0.33 -19.09 16 19 C -0.23 -6.44 9.99 -15.06 -0.15 -6.59 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -28.69 13.06 55.49 0.72 -27.96 16 23 Si 0.90 22.40 29.55 -169.99 -5.02 17.37 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 C 0.05 0.78 4.42 -3.83 -0.02 0.76 16 28 C -0.12 -1.55 9.34 -39.05 -0.36 -1.91 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.09 1.09 6.37 -51.93 -0.33 0.76 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.16 6.98 -51.93 -0.36 0.80 16 38 H 0.08 1.01 8.01 -51.93 -0.42 0.59 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.04 0.73 7.40 -51.93 -0.38 0.34 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.85 5.11 -51.93 -0.27 0.58 16 44 H 0.39 10.89 7.65 -40.82 -0.31 10.57 16 45 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.07 1.00 8.11 -51.93 -0.42 0.57 16 47 H 0.14 2.07 4.63 -73.59 -0.34 1.73 16 48 H 0.14 1.68 7.66 -52.49 -0.40 1.27 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -33.64 379.46 -9.03 -42.67 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -7.40 Total: 9.74 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -2.14 Total: 3.59 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -0.02 Total: -62.43 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.16 Total: -16.66 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.64 -9.03 -42.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200859686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.793 kcal (2) G-P(sol) polarization free energy of solvation -33.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds