Wall clock time and date at job start Tue Mar 31 2020 17:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38592 * 120.32918 * 2 1 4 4 N 1.31499 * 120.90574 * 180.02562 * 3 2 1 5 5 C 1.32745 * 121.63810 * 359.97101 * 4 3 2 6 6 C 1.48170 * 119.71761 * 180.02562 * 5 4 3 7 7 O 1.21522 * 119.99681 * 187.02994 * 6 5 4 8 8 N 1.34774 * 120.00451 * 7.03429 * 6 5 4 9 9 C 1.47506 * 118.75863 * 185.96066 * 8 6 5 10 10 C 1.53951 * 110.82099 * 138.25061 * 9 8 6 11 11 C 1.51537 * 109.72750 * 320.30575 * 10 9 8 12 12 O 1.42160 * 108.76426 * 91.29308 * 11 10 9 13 13 C 1.38012 * 119.43691 * 272.78126 * 12 11 10 14 14 H 1.09004 * 109.47212 * 303.42994 * 13 12 11 15 15 C 1.52999 * 109.46921 * 183.43514 * 13 12 11 16 16 N 1.46492 * 109.47142 * 64.98613 * 15 13 12 17 17 C 1.36939 * 119.99992 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00289 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00075 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99904 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00139 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46768 * 60.00157 * 21 19 17 23 23 H 1.48495 * 109.47252 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47533 * 300.00437 * 21 19 17 25 25 C 1.45121 * 118.75312 * 6.22232 * 8 6 5 26 26 C 1.39270 * 120.55654 * 0.02562 * 5 4 3 27 27 C 1.38590 * 120.32049 * 179.97438 * 2 1 3 28 28 C 1.50696 * 120.75686 * 0.04231 * 27 2 1 29 29 H 1.09003 * 109.47256 * 89.99736 * 1 2 3 30 30 H 1.08999 * 109.47692 * 210.00022 * 1 2 3 31 31 H 1.09001 * 109.46803 * 330.00176 * 1 2 3 32 32 H 1.08003 * 119.54676 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.16301 * 258.76655 * 9 8 6 34 34 H 1.08998 * 109.16286 * 17.96711 * 9 8 6 35 35 H 1.08996 * 109.46061 * 200.17600 * 10 9 8 36 36 H 1.08998 * 109.29461 * 80.32888 * 10 9 8 37 37 H 1.09005 * 109.58698 * 331.51037 * 11 10 9 38 38 H 1.08998 * 109.58768 * 211.08023 * 11 10 9 39 39 H 1.08995 * 109.47075 * 184.98941 * 15 13 12 40 40 H 1.09004 * 109.46995 * 304.98795 * 15 13 12 41 41 H 0.96994 * 120.00466 * 0.02562 * 16 15 13 42 42 H 0.97002 * 119.99911 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.46377 * 29.31703 * 25 8 6 44 44 H 1.09006 * 109.46057 * 149.28771 * 25 8 6 45 45 H 1.08003 * 120.46885 * 179.97438 * 26 5 4 46 46 H 1.09004 * 109.47082 * 90.00042 * 28 27 2 47 47 H 1.09004 * 109.47276 * 210.00351 * 28 27 2 48 48 H 1.09000 * 109.47081 * 330.00361 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1962 0.0000 4 7 3.5218 1.2095 -0.0005 5 6 4.2294 0.0864 -0.0005 6 6 5.7097 0.1509 -0.0005 7 8 6.3622 -0.8661 -0.1292 8 7 6.3326 1.3375 0.1424 9 6 7.8004 1.3896 0.0056 10 6 8.2312 2.6285 -0.8004 11 6 7.2680 2.8520 -1.9487 12 8 6.2320 3.7228 -1.5136 13 6 5.1166 3.1944 -0.8959 14 1 4.6531 2.4572 -1.5515 15 6 4.1174 4.3152 -0.6021 16 7 3.6314 4.8793 -1.8637 17 6 2.7223 5.9032 -1.8508 18 1 2.3638 6.2953 -0.9104 19 6 2.2614 6.4374 -3.0462 20 7 2.6978 5.9593 -4.1922 21 14 1.0206 7.8337 -3.0286 22 1 1.5983 9.0001 -2.3135 23 1 0.6925 8.2220 -4.4238 24 1 -0.2146 7.3897 -2.3342 25 6 5.5343 2.5147 0.4307 26 6 3.5922 -1.1520 -0.0004 27 6 2.2066 -1.1963 0.0005 28 6 1.4778 -2.5153 0.0002 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6648 2.1304 -0.0004 33 1 8.2510 1.4289 0.9974 34 1 8.1440 0.4914 -0.5073 35 1 9.2358 2.4742 -1.1941 36 1 8.2273 3.5018 -0.1481 37 1 6.8388 1.8985 -2.2565 38 1 7.7976 3.3044 -2.7871 39 1 3.2770 3.9135 -0.0361 40 1 4.6076 5.0957 -0.0201 41 1 3.9536 4.5275 -2.7083 42 1 2.3754 6.3323 -5.0276 43 1 4.6428 2.2221 0.9853 44 1 6.1203 3.2135 1.0278 45 1 4.1693 -2.0649 -0.0008 46 1 1.3028 -2.8334 -1.0276 47 1 2.0807 -3.2638 0.5145 48 1 0.5228 -2.4029 0.5133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201024165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:56 Heat of formation + Delta-G solvation = -28.574957 kcal Electronic energy + Delta-G solvation = -30190.393139 eV Core-core repulsion = 26245.844875 eV Total energy + Delta-G solvation = -3944.548264 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.24705 -40.79375 -39.64503 -36.70269 -36.46919 -35.60555 -34.25877 -33.43056 -32.68191 -30.25559 -29.35219 -28.54029 -27.51819 -26.61233 -24.72002 -23.86712 -23.71021 -22.41599 -21.98366 -20.50449 -19.17358 -18.61956 -18.28441 -17.60248 -17.28419 -16.75700 -16.72553 -16.28243 -16.14407 -16.01990 -15.49488 -15.34810 -15.07266 -14.82174 -14.69859 -14.39897 -14.01374 -13.92751 -13.81116 -13.66957 -13.51627 -13.50465 -13.29275 -13.02932 -12.74149 -12.68267 -12.53647 -12.46141 -12.31702 -12.11384 -11.89723 -11.75293 -11.55681 -11.29015 -10.88920 -10.62388 -10.41707 -10.18776 -9.95641 -9.60969 -8.91699 -7.86947 -5.15378 -0.41434 0.18928 1.50233 1.53846 1.54381 1.60148 1.81096 2.61479 2.70619 2.83042 2.99351 3.46934 3.53395 3.74024 3.74590 3.83778 3.86993 3.91099 4.05635 4.11534 4.14318 4.25083 4.33691 4.47816 4.49829 4.52897 4.62204 4.63254 4.68505 4.71835 4.76161 4.77579 4.86993 4.92595 4.97006 5.00677 5.10235 5.12874 5.15364 5.25716 5.32533 5.37243 5.45156 5.54704 5.71632 6.11938 6.33100 6.65963 6.82107 6.97253 7.39578 8.16156 8.40895 9.37037 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009003 B = 0.004700 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.400427 B = 5955.419215 C = 8556.461331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.107 4.107 3 C 0.086 3.914 4 N -0.457 5.457 5 C 0.040 3.960 6 C 0.563 3.437 7 O -0.566 6.566 8 N -0.590 5.590 9 C 0.106 3.894 10 C -0.151 4.151 11 C 0.070 3.930 12 O -0.403 6.403 13 C 0.117 3.883 14 H 0.029 0.971 15 C 0.174 3.826 16 N -0.738 5.738 17 C -0.238 4.238 18 H 0.080 0.920 19 C -0.078 4.078 20 N -0.973 5.973 21 Si 0.974 3.026 22 H -0.280 1.280 23 H -0.299 1.299 24 H -0.273 1.273 25 C 0.088 3.912 26 C -0.113 4.113 27 C -0.054 4.054 28 C -0.115 4.115 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.166 0.834 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.030 0.970 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.019 0.981 41 H 0.370 0.630 42 H 0.248 0.752 43 H 0.123 0.877 44 H 0.084 0.916 45 H 0.147 0.853 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 -16.848 12.709 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.109 4.109 3 C -0.073 4.073 4 N -0.169 5.169 5 C -0.097 4.097 6 C 0.351 3.649 7 O -0.446 6.446 8 N -0.319 5.319 9 C -0.014 4.014 10 C -0.189 4.189 11 C -0.006 4.006 12 O -0.322 6.322 13 C 0.057 3.943 14 H 0.047 0.953 15 C 0.047 3.953 16 N -0.380 5.380 17 C -0.369 4.369 18 H 0.097 0.903 19 C -0.269 4.269 20 N -0.625 5.625 21 Si 0.803 3.197 22 H -0.206 1.206 23 H -0.226 1.226 24 H -0.199 1.199 25 C -0.036 4.036 26 C -0.134 4.134 27 C -0.062 4.062 28 C -0.171 4.171 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.183 0.817 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.133 0.867 36 H 0.100 0.900 37 H 0.048 0.952 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.201 0.799 42 H 0.057 0.943 43 H 0.141 0.859 44 H 0.102 0.898 45 H 0.165 0.835 46 H 0.105 0.895 47 H 0.100 0.900 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.239 -16.270 12.738 20.785 hybrid contribution -0.669 -0.120 -0.830 1.073 sum 1.570 -16.391 11.908 20.321 Atomic orbital electron populations 1.20940 0.87632 1.04893 1.03740 1.21365 0.99446 0.92837 0.97268 1.23154 0.89419 0.99056 0.95718 1.68091 1.09083 1.28925 1.10762 1.21023 0.93600 0.90842 1.04189 1.18344 0.86833 0.83489 0.76251 1.90706 1.66736 1.34819 1.52295 1.47885 1.08205 1.07704 1.68144 1.22127 0.77782 0.99763 1.01767 1.22467 1.00764 0.98009 0.97682 1.22262 0.88068 0.93138 0.97111 1.86335 1.29944 1.38376 1.77561 1.21836 0.85226 0.94426 0.92830 0.95336 1.20660 0.93529 0.92529 0.88582 1.42439 1.50968 1.41114 1.03484 1.19631 1.15428 1.09107 0.92780 0.90256 1.25560 1.03348 1.03028 0.94999 1.69856 1.49282 1.46389 0.96943 0.85201 0.79226 0.79336 0.75933 1.20605 1.22561 1.19866 1.22801 0.96877 0.86148 0.97729 1.22053 0.95217 0.98120 0.98034 1.20551 0.92521 0.97351 0.95751 1.20963 1.00992 0.91085 1.04046 0.89969 0.88543 0.90111 0.81677 0.89433 0.89791 0.86694 0.89996 0.95177 0.88675 0.93089 0.96320 0.79909 0.94289 0.85934 0.89769 0.83506 0.89471 0.89990 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.65 71.24 0.69 -0.93 16 2 C -0.11 -2.23 5.91 -19.70 -0.12 -2.34 16 3 C 0.09 2.27 10.86 84.83 0.92 3.19 16 4 N -0.46 -13.65 4.16 -184.91 -0.77 -14.42 16 5 C 0.04 1.18 6.51 41.89 0.27 1.45 16 6 C 0.56 17.88 7.60 86.88 0.66 18.54 16 7 O -0.57 -19.74 15.70 -3.79 -0.06 -19.80 16 8 N -0.59 -17.00 2.18 -820.25 -1.79 -18.79 16 9 C 0.11 2.51 6.16 86.51 0.53 3.05 16 10 C -0.15 -3.37 5.79 30.44 0.18 -3.19 16 11 C 0.07 2.13 6.38 71.50 0.46 2.59 16 12 O -0.40 -15.50 9.38 -117.83 -1.11 -16.60 16 13 C 0.12 4.31 1.81 31.21 0.06 4.37 16 14 H 0.03 1.21 7.02 -2.38 -0.02 1.19 16 15 C 0.17 7.30 5.92 86.38 0.51 7.82 16 16 N -0.74 -39.34 5.54 -343.47 -1.90 -41.24 16 17 C -0.24 -13.46 9.99 84.03 0.84 -12.62 16 18 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 19 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 20 N -0.97 -61.40 13.06 21.65 0.28 -61.12 16 21 Si 0.97 46.44 29.55 68.60 2.03 48.47 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 C 0.09 2.62 4.40 87.25 0.38 3.00 16 26 C -0.11 -2.82 9.34 22.61 0.21 -2.61 16 27 C -0.05 -1.07 5.91 -19.69 -0.12 -1.19 16 28 C -0.11 -1.35 9.67 71.23 0.69 -0.66 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.10 0.88 6.06 -2.39 -0.01 0.86 16 31 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 32 H 0.17 4.28 8.06 -2.91 -0.02 4.25 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.08 7.07 -2.39 -0.02 2.07 16 35 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 1.86 8.01 -2.39 -0.02 1.84 16 37 H 0.03 0.99 7.41 -2.38 -0.02 0.97 16 38 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.05 2.00 7.99 -2.39 -0.02 1.99 16 40 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.37 21.75 7.65 -92.71 -0.71 21.04 16 42 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 43 H 0.12 3.61 5.21 -2.79 -0.01 3.59 16 44 H 0.08 2.28 8.11 -2.38 -0.02 2.26 16 45 H 0.15 3.43 7.66 -2.91 -0.02 3.41 16 46 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.08 0.83 8.10 -2.38 -0.02 0.81 16 48 H 0.10 0.76 6.07 -2.39 -0.01 0.75 16 Total: -1.00 -74.41 379.80 3.58 -70.83 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: 0.26 Total: 36.28 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 6.63 Total: 16.40 kcal Atomic # 7 Polarization: -131.39 SS G_CDS: -4.18 Total: -135.57 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -1.16 Total: -36.40 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -74.41 3.58 -70.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201024165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.253 kcal (2) G-P(sol) polarization free energy of solvation -74.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds