Wall clock time and date at job start Tue Mar 31 2020 17:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35924 * 117.00016 * 2 1 4 4 C 1.38857 * 120.40452 * 359.97438 * 3 2 1 5 5 N 1.31876 * 120.99770 * 179.72153 * 4 3 2 6 6 C 1.31684 * 121.94425 * 0.27820 * 5 4 3 7 7 C 1.39521 * 120.69022 * 0.02562 * 6 5 4 8 8 C 1.47853 * 120.52992 * 179.97438 * 7 6 5 9 9 O 1.21564 * 120.00067 * 234.43941 * 8 7 6 10 10 N 1.34776 * 120.00206 * 54.44166 * 8 7 6 11 11 C 1.46923 * 120.63036 * 5.29915 * 10 8 7 12 12 C 1.53624 * 108.54349 * 126.36887 * 11 10 8 13 13 C 1.53041 * 109.24267 * 54.85454 * 12 11 10 14 14 C 1.52995 * 109.45121 * 178.49455 * 13 12 11 15 15 N 1.46500 * 109.47268 * 295.06790 * 14 13 12 16 16 C 1.36944 * 120.00100 * 179.97438 * 15 14 13 17 17 H 1.07993 * 119.99648 * 359.97438 * 16 15 14 18 18 C 1.38809 * 119.99804 * 179.97438 * 16 15 14 19 19 N 1.31621 * 120.00285 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99956 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46906 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47420 * 119.99715 * 20 18 16 23 23 H 1.48494 * 109.47428 * 240.00563 * 20 18 16 24 24 C 1.53038 * 109.53868 * 298.51428 * 13 12 11 25 25 C 1.46931 * 120.63145 * 185.57794 * 10 8 7 26 26 C 1.38845 * 120.40800 * 180.29419 * 3 2 1 27 27 C 1.50698 * 120.87915 * 359.97438 * 26 3 2 28 28 H 1.09000 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47291 * 299.99967 * 1 2 3 30 30 H 1.08996 * 109.47424 * 59.99901 * 1 2 3 31 31 H 1.07994 * 119.49768 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.65640 * 179.97438 * 6 5 4 33 33 H 1.08993 * 109.58684 * 246.20500 * 11 10 8 34 34 H 1.09001 * 109.58407 * 6.62566 * 11 10 8 35 35 H 1.09002 * 109.63314 * 294.86508 * 12 11 10 36 36 H 1.09003 * 109.43205 * 174.72848 * 12 11 10 37 37 H 1.09004 * 109.45339 * 58.53535 * 13 12 11 38 38 H 1.09003 * 109.46874 * 55.06253 * 14 13 12 39 39 H 1.08990 * 109.47527 * 175.06434 * 14 13 12 40 40 H 0.97001 * 120.00261 * 359.97438 * 15 14 13 41 41 H 0.97006 * 119.99959 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.49681 * 301.41047 * 24 13 12 43 43 H 1.09000 * 109.52083 * 181.32992 * 24 13 12 44 44 H 1.09004 * 109.58730 * 353.37489 * 25 10 8 45 45 H 1.09003 * 109.58511 * 113.65493 * 25 10 8 46 46 H 1.09005 * 109.47170 * 275.18853 * 27 26 3 47 47 H 1.08993 * 109.47363 * 35.18623 * 27 26 3 48 48 H 1.09001 * 109.47611 * 155.19205 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3809 -0.0005 5 7 1.8845 3.5621 0.0050 6 6 3.1952 3.6892 0.0057 7 6 4.0198 2.5637 0.0002 8 6 5.4910 2.7105 0.0005 9 8 6.1564 2.1657 -0.8587 10 7 6.0944 3.4483 0.9534 11 6 5.3181 4.0168 2.0636 12 6 5.9705 3.5871 3.3864 13 6 7.4454 3.9954 3.3774 14 6 8.0908 3.6031 4.7079 15 7 7.4800 4.3747 5.7932 16 6 7.8996 4.1916 7.0838 17 1 8.6805 3.4781 7.3016 18 6 7.3212 4.9231 8.1120 19 7 6.3691 5.7923 7.8466 20 14 7.8930 4.6728 9.8727 21 1 8.9661 3.6467 9.9034 22 1 8.4184 5.9539 10.4094 23 1 6.7499 4.2192 10.7048 24 6 8.1667 3.2829 2.2311 25 6 7.5402 3.7045 0.8983 26 6 3.4320 1.2936 -0.0061 27 6 4.2809 0.0485 -0.0124 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2197 2.3226 -0.0014 32 1 3.6365 4.6749 0.0099 33 1 5.3172 5.1042 1.9897 34 1 4.2943 3.6449 2.0217 35 1 5.8931 2.5056 3.4986 36 1 5.4624 4.0767 4.2172 37 1 7.5226 5.0740 3.2404 38 1 7.9362 2.5391 4.8870 39 1 9.1595 3.8135 4.6694 40 1 6.7783 5.0153 5.5976 41 1 5.9647 6.3032 8.5653 42 1 8.0687 2.2043 2.3541 43 1 9.2220 3.5556 2.2394 44 1 7.9831 3.1264 0.0872 45 1 7.7169 4.7666 0.7288 46 1 4.4135 -0.3060 1.0099 47 1 3.7891 -0.7237 -0.6037 48 1 5.2544 0.2746 -0.4475 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205521752.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:23 Heat of formation + Delta-G solvation = -28.264287 kcal Electronic energy + Delta-G solvation = -28984.717880 eV Core-core repulsion = 25040.183087 eV Total energy + Delta-G solvation = -3944.534792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.40175 -40.04721 -38.37393 -37.68788 -35.00485 -34.07651 -32.99860 -31.61238 -30.54383 -30.27559 -28.22198 -27.98847 -26.73057 -24.57020 -23.38860 -23.35367 -22.57443 -21.69185 -20.40637 -19.39987 -18.24919 -17.80322 -17.14391 -16.72875 -16.55542 -16.26932 -16.02395 -15.23199 -14.79413 -14.55592 -14.35113 -14.17329 -14.05211 -13.77670 -13.62594 -13.46833 -13.18634 -13.08753 -12.90692 -12.73342 -12.44768 -12.33929 -12.23987 -12.04509 -11.87707 -11.80596 -11.19036 -11.01388 -10.86514 -10.50380 -10.42270 -10.34738 -10.24824 -9.97722 -9.72594 -9.66407 -9.53852 -8.88698 -8.79649 -8.69300 -6.92314 -5.77957 -3.06017 0.44451 0.89429 2.35823 2.67891 2.96013 3.38381 3.42366 3.48340 3.50299 4.02967 4.15980 4.28818 4.41483 4.55539 4.57904 4.71731 4.78671 4.84596 4.95116 5.00050 5.06327 5.09965 5.14746 5.26124 5.33070 5.42620 5.45594 5.47337 5.53845 5.60998 5.75452 5.82425 5.89981 5.91945 5.95217 6.06592 6.12287 6.16940 6.25775 6.38972 6.44693 6.60585 6.76867 6.78869 6.90382 7.22292 7.53018 7.70016 7.93444 8.41415 9.52694 10.10694 10.45303 11.45045 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013433 B = 0.002714 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.939772 B =10315.174915 C =11369.309976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.071 3.929 4 C 0.035 3.965 5 N -0.452 5.452 6 C 0.101 3.899 7 C -0.141 4.141 8 C 0.570 3.430 9 O -0.534 6.534 10 N -0.597 5.597 11 C 0.101 3.899 12 C -0.123 4.123 13 C -0.094 4.094 14 C 0.158 3.842 15 N -0.732 5.732 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.126 4.126 25 C 0.113 3.887 26 C -0.025 4.025 27 C -0.124 4.124 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.162 0.838 32 H 0.164 0.836 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.018 0.982 39 H 0.019 0.981 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.923 -8.614 -19.695 23.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.024 3.976 4 C -0.122 4.122 5 N -0.160 5.160 6 C -0.058 4.058 7 C -0.147 4.147 8 C 0.356 3.644 9 O -0.412 6.412 10 N -0.329 5.329 11 C -0.021 4.021 12 C -0.162 4.162 13 C -0.113 4.113 14 C 0.031 3.969 15 N -0.377 5.377 16 C -0.369 4.369 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.164 4.164 25 C -0.009 4.009 26 C -0.034 4.034 27 C -0.180 4.180 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.179 0.821 32 H 0.181 0.819 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.035 0.965 39 H 0.037 0.963 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.907 -8.437 -19.992 23.854 hybrid contribution 0.129 -0.389 1.136 1.208 sum -9.778 -8.826 -18.856 23.001 Atomic orbital electron populations 1.23163 0.77806 1.04583 1.01679 1.86097 1.21671 1.25496 1.88491 1.19726 0.92215 0.86114 0.99582 1.23059 1.00740 0.87044 1.01348 1.67551 1.11703 1.25940 1.10854 1.22826 0.88468 0.98090 0.96450 1.20675 0.94903 0.93982 1.05093 1.17974 0.86408 0.78422 0.81557 1.90760 1.65323 1.47088 1.38012 1.48113 1.09308 1.50981 1.24543 1.22113 0.95183 0.98743 0.86071 1.21993 0.96277 1.01880 0.96009 1.21316 0.94464 1.00247 0.95276 1.20664 0.95115 0.94759 0.86402 1.42386 1.45137 1.47656 1.02476 1.19274 1.15624 1.18027 0.83930 0.91224 1.24727 0.99071 0.99273 0.97988 1.69662 1.28732 1.28538 1.31340 0.86131 0.77742 0.77242 0.85173 1.20598 1.21883 1.21892 1.21908 0.99848 1.01105 0.93565 1.21701 0.78854 1.01257 0.99108 1.19669 0.90928 0.95462 0.97312 1.20891 1.00230 0.93589 1.03300 0.87715 0.92168 0.92342 0.82070 0.81874 0.90598 0.90054 0.91777 0.89235 0.90848 0.96453 0.96319 0.78275 0.93593 0.91504 0.90462 0.89007 0.91079 0.90379 0.90364 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.82 9.76 -19.50 -0.19 -3.01 16 3 C 0.07 0.75 6.68 -39.13 -0.26 0.49 16 4 C 0.04 0.35 10.21 -17.30 -0.18 0.18 16 5 N -0.45 -5.21 10.34 -12.80 -0.13 -5.35 16 6 C 0.10 1.13 8.96 -17.14 -0.15 0.98 16 7 C -0.14 -1.72 4.60 -104.84 -0.48 -2.21 16 8 C 0.57 7.58 6.59 -12.33 -0.08 7.50 16 9 O -0.53 -8.39 14.63 5.31 0.08 -8.32 16 10 N -0.60 -7.28 2.97 -173.61 -0.51 -7.79 16 11 C 0.10 1.20 5.64 -3.49 -0.02 1.18 16 12 C -0.12 -1.79 5.26 -26.39 -0.14 -1.93 16 13 C -0.09 -1.41 2.19 -90.58 -0.20 -1.61 16 14 C 0.16 3.08 5.65 -4.04 -0.02 3.06 16 15 N -0.73 -18.04 5.32 -59.91 -0.32 -18.36 16 16 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 20 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 24 C -0.13 -1.56 5.36 -26.62 -0.14 -1.70 16 25 C 0.11 1.30 6.44 -3.71 -0.02 1.28 16 26 C -0.02 -0.29 5.96 -103.76 -0.62 -0.91 16 27 C -0.12 -1.37 9.49 36.00 0.34 -1.03 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.26 7.68 -51.92 -0.40 -0.14 16 30 H 0.06 0.23 7.67 -51.93 -0.40 -0.17 16 31 H 0.16 1.12 6.30 -52.49 -0.33 0.79 16 32 H 0.16 1.55 7.78 -52.49 -0.41 1.15 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.93 5.38 -51.93 -0.28 0.65 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.50 7.15 -51.93 -0.37 1.13 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.38 9.80 6.84 -40.82 -0.28 9.52 16 41 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 0.78 7.78 -51.93 -0.40 0.38 16 48 H 0.09 1.14 5.72 -51.93 -0.30 0.84 16 LS Contribution 382.15 15.07 5.76 5.76 Total: -1.00 -33.15 382.15 -8.15 -41.31 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.30 Total: 6.46 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.23 Total: -0.88 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -0.24 Total: -58.61 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.11 Total: -11.32 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.15 -8.15 -41.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205521752.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.045 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds