Wall clock time and date at job start Tue Mar 31 2020 17:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35924 * 117.00016 * 2 1 4 4 C 1.38857 * 120.40452 * 359.97438 * 3 2 1 5 5 N 1.31876 * 120.99770 * 179.72153 * 4 3 2 6 6 C 1.31684 * 121.94425 * 0.27820 * 5 4 3 7 7 C 1.39521 * 120.69022 * 0.02562 * 6 5 4 8 8 C 1.47853 * 120.52992 * 179.97438 * 7 6 5 9 9 O 1.21564 * 120.00067 * 234.43941 * 8 7 6 10 10 N 1.34776 * 120.00206 * 54.44166 * 8 7 6 11 11 C 1.46923 * 120.63036 * 5.29915 * 10 8 7 12 12 C 1.53624 * 108.54349 * 126.36887 * 11 10 8 13 13 C 1.53041 * 109.24267 * 54.85454 * 12 11 10 14 14 C 1.52995 * 109.45121 * 178.49455 * 13 12 11 15 15 N 1.46500 * 109.47268 * 295.06790 * 14 13 12 16 16 C 1.36944 * 120.00100 * 179.97438 * 15 14 13 17 17 H 1.07993 * 119.99648 * 359.97438 * 16 15 14 18 18 C 1.38809 * 119.99804 * 179.97438 * 16 15 14 19 19 N 1.31621 * 120.00285 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99956 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46906 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47420 * 119.99715 * 20 18 16 23 23 H 1.48494 * 109.47428 * 240.00563 * 20 18 16 24 24 C 1.53038 * 109.53868 * 298.51428 * 13 12 11 25 25 C 1.46931 * 120.63145 * 185.57794 * 10 8 7 26 26 C 1.38845 * 120.40800 * 180.29419 * 3 2 1 27 27 C 1.50698 * 120.87915 * 359.97438 * 26 3 2 28 28 H 1.09000 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47291 * 299.99967 * 1 2 3 30 30 H 1.08996 * 109.47424 * 59.99901 * 1 2 3 31 31 H 1.07994 * 119.49768 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.65640 * 179.97438 * 6 5 4 33 33 H 1.08993 * 109.58684 * 246.20500 * 11 10 8 34 34 H 1.09001 * 109.58407 * 6.62566 * 11 10 8 35 35 H 1.09002 * 109.63314 * 294.86508 * 12 11 10 36 36 H 1.09003 * 109.43205 * 174.72848 * 12 11 10 37 37 H 1.09004 * 109.45339 * 58.53535 * 13 12 11 38 38 H 1.09003 * 109.46874 * 55.06253 * 14 13 12 39 39 H 1.08990 * 109.47527 * 175.06434 * 14 13 12 40 40 H 0.97001 * 120.00261 * 359.97438 * 15 14 13 41 41 H 0.97006 * 119.99959 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.49681 * 301.41047 * 24 13 12 43 43 H 1.09000 * 109.52083 * 181.32992 * 24 13 12 44 44 H 1.09004 * 109.58730 * 353.37489 * 25 10 8 45 45 H 1.09003 * 109.58511 * 113.65493 * 25 10 8 46 46 H 1.09005 * 109.47170 * 275.18853 * 27 26 3 47 47 H 1.08993 * 109.47363 * 35.18623 * 27 26 3 48 48 H 1.09001 * 109.47611 * 155.19205 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3809 -0.0005 5 7 1.8845 3.5621 0.0050 6 6 3.1952 3.6892 0.0057 7 6 4.0198 2.5637 0.0002 8 6 5.4910 2.7105 0.0005 9 8 6.1564 2.1657 -0.8587 10 7 6.0944 3.4483 0.9534 11 6 5.3181 4.0168 2.0636 12 6 5.9705 3.5871 3.3864 13 6 7.4454 3.9954 3.3774 14 6 8.0908 3.6031 4.7079 15 7 7.4800 4.3747 5.7932 16 6 7.8996 4.1916 7.0838 17 1 8.6805 3.4781 7.3016 18 6 7.3212 4.9231 8.1120 19 7 6.3691 5.7923 7.8466 20 14 7.8930 4.6728 9.8727 21 1 8.9661 3.6467 9.9034 22 1 8.4184 5.9539 10.4094 23 1 6.7499 4.2192 10.7048 24 6 8.1667 3.2829 2.2311 25 6 7.5402 3.7045 0.8983 26 6 3.4320 1.2936 -0.0061 27 6 4.2809 0.0485 -0.0124 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2197 2.3226 -0.0014 32 1 3.6365 4.6749 0.0099 33 1 5.3172 5.1042 1.9897 34 1 4.2943 3.6449 2.0217 35 1 5.8931 2.5056 3.4986 36 1 5.4624 4.0767 4.2172 37 1 7.5226 5.0740 3.2404 38 1 7.9362 2.5391 4.8870 39 1 9.1595 3.8135 4.6694 40 1 6.7783 5.0153 5.5976 41 1 5.9647 6.3032 8.5653 42 1 8.0687 2.2043 2.3541 43 1 9.2220 3.5556 2.2394 44 1 7.9831 3.1264 0.0872 45 1 7.7169 4.7666 0.7288 46 1 4.4135 -0.3060 1.0099 47 1 3.7891 -0.7237 -0.6037 48 1 5.2544 0.2746 -0.4475 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205521752.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:22 Heat of formation + Delta-G solvation = -49.694206 kcal Electronic energy + Delta-G solvation = -28985.647151 eV Core-core repulsion = 25040.183087 eV Total energy + Delta-G solvation = -3945.464063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.25758 -40.97408 -39.21570 -38.77243 -36.59598 -34.93114 -34.55776 -32.80288 -31.95330 -31.43024 -29.07930 -28.56532 -28.11192 -25.90570 -24.73289 -24.44225 -23.48630 -22.98585 -21.59850 -20.41186 -19.30066 -18.94824 -18.59648 -17.64393 -17.39836 -17.00468 -16.89460 -16.70087 -16.16713 -15.68388 -15.45669 -15.33928 -15.17101 -15.07866 -14.86780 -14.52127 -14.26225 -14.02165 -14.00802 -13.87021 -13.66677 -13.48171 -13.12918 -13.00979 -12.92372 -12.78522 -12.76156 -12.38753 -12.22569 -12.11842 -11.95972 -11.68115 -11.59258 -11.35617 -11.29598 -10.92831 -10.59661 -10.44437 -9.75373 -9.52747 -8.97070 -7.94415 -5.22083 -0.39849 0.06620 1.39264 1.47884 1.47982 1.58012 1.80054 2.22316 2.54893 2.56556 3.19974 3.39220 3.39416 3.46224 3.57865 3.75941 3.76696 3.85043 3.93166 4.10003 4.14788 4.29783 4.32635 4.35702 4.39579 4.40691 4.47410 4.58141 4.58975 4.60468 4.71148 4.76641 4.79271 4.85994 4.95035 4.98635 5.02212 5.06713 5.09800 5.16227 5.26227 5.31082 5.47717 5.53074 5.54746 6.12002 6.21426 6.28789 6.71389 6.92722 7.35502 8.11875 8.35891 9.29045 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013433 B = 0.002714 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.939772 B =10315.174915 C =11369.309976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.073 3.927 4 C 0.039 3.961 5 N -0.466 5.466 6 C 0.098 3.902 7 C -0.154 4.154 8 C 0.572 3.428 9 O -0.562 6.562 10 N -0.594 5.594 11 C 0.112 3.888 12 C -0.117 4.117 13 C -0.083 4.083 14 C 0.157 3.843 15 N -0.742 5.742 16 C -0.244 4.244 17 H 0.071 0.929 18 C -0.073 4.073 19 N -0.966 5.966 20 Si 0.970 3.030 21 H -0.269 1.269 22 H -0.293 1.293 23 H -0.293 1.293 24 C -0.116 4.116 25 C 0.114 3.886 26 C -0.045 4.045 27 C -0.117 4.117 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.192 0.808 32 H 0.178 0.822 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.012 0.988 39 H 0.021 0.979 40 H 0.376 0.624 41 H 0.251 0.749 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.565 -8.886 -20.282 24.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.025 3.975 4 C -0.119 4.119 5 N -0.175 5.175 6 C -0.061 4.061 7 C -0.159 4.159 8 C 0.360 3.640 9 O -0.442 6.442 10 N -0.326 5.326 11 C -0.011 4.011 12 C -0.156 4.156 13 C -0.102 4.102 14 C 0.030 3.970 15 N -0.385 5.385 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.266 4.266 19 N -0.617 5.617 20 Si 0.799 3.201 21 H -0.193 1.193 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.154 4.154 25 C -0.007 4.007 26 C -0.054 4.054 27 C -0.173 4.173 28 H 0.142 0.858 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.209 0.791 32 H 0.195 0.805 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.030 0.970 39 H 0.039 0.961 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.097 0.903 47 H 0.105 0.895 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.529 -8.731 -20.593 24.722 hybrid contribution 0.275 -0.400 1.288 1.376 sum -10.254 -9.131 -19.305 23.690 Atomic orbital electron populations 1.23506 0.75592 1.06329 1.02840 1.86091 1.23955 1.24848 1.88166 1.19748 0.91849 0.86948 0.98998 1.23534 1.02106 0.86355 0.99889 1.67613 1.11747 1.26719 1.11416 1.23018 0.88492 0.98375 0.96176 1.20632 0.94263 0.94595 1.06428 1.18134 0.86862 0.77830 0.81206 1.90742 1.66085 1.48210 1.39180 1.48137 1.09637 1.50565 1.24229 1.22030 0.95027 0.99659 0.84346 1.21867 0.96000 1.00938 0.96778 1.21198 0.94662 1.00563 0.93779 1.20817 0.95197 0.93705 0.87256 1.42566 1.45150 1.47988 1.02839 1.19635 1.15131 1.17388 0.85423 0.91071 1.25503 0.99678 0.99600 1.01811 1.69802 1.30073 1.29660 1.32184 0.85127 0.77362 0.77160 0.80437 1.19335 1.21974 1.22039 1.21820 1.00467 1.00284 0.92853 1.21752 0.78337 1.02405 0.98232 1.19866 0.91943 0.95505 0.98058 1.20805 0.99396 0.93812 1.03337 0.85845 0.91194 0.90902 0.79135 0.80537 0.88844 0.89506 0.92768 0.91674 0.90677 0.97023 0.96148 0.79102 0.94000 0.92205 0.88969 0.89111 0.89142 0.90264 0.89519 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.82 113.37 1.11 1.20 16 2 O -0.32 -5.36 9.76 -92.69 -0.90 -6.26 16 3 C 0.07 1.45 6.68 22.56 0.15 1.60 16 4 C 0.04 0.69 10.21 84.83 0.87 1.56 16 5 N -0.47 -10.04 10.34 -194.40 -2.01 -12.05 16 6 C 0.10 2.09 8.96 85.02 0.76 2.85 16 7 C -0.15 -3.67 4.60 -20.01 -0.09 -3.76 16 8 C 0.57 14.94 6.59 86.79 0.57 15.51 16 9 O -0.56 -17.65 14.63 -3.92 -0.06 -17.71 16 10 N -0.59 -13.83 2.97 -821.46 -2.44 -16.27 16 11 C 0.11 2.52 5.64 86.51 0.49 3.01 16 12 C -0.12 -3.38 5.26 30.82 0.16 -3.22 16 13 C -0.08 -2.43 2.19 -10.77 -0.02 -2.46 16 14 C 0.16 6.07 5.65 86.38 0.49 6.56 16 15 N -0.74 -36.85 5.32 -343.47 -1.83 -38.68 16 16 C -0.24 -13.55 9.99 84.03 0.84 -12.71 16 17 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 18 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 19 N -0.97 -58.20 13.06 21.65 0.28 -57.92 16 20 Si 0.97 45.92 29.55 68.60 2.03 47.95 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 24 C -0.12 -2.71 5.36 30.67 0.16 -2.55 16 25 C 0.11 2.45 6.44 86.36 0.56 3.01 16 26 C -0.04 -1.05 5.96 -19.30 -0.12 -1.16 16 27 C -0.12 -2.61 9.49 71.24 0.68 -1.93 16 28 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.42 7.68 -2.38 -0.02 0.40 16 30 H 0.07 0.36 7.67 -2.39 -0.02 0.34 16 31 H 0.19 2.10 6.30 -2.91 -0.02 2.08 16 32 H 0.18 3.11 7.78 -2.91 -0.02 3.08 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.09 1.91 5.38 -2.39 -0.01 1.90 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 2.22 7.15 -2.39 -0.02 2.20 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.38 19.54 6.84 -92.71 -0.63 18.91 16 41 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.09 2.04 7.00 -2.39 -0.02 2.03 16 45 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.08 1.68 8.14 -2.38 -0.02 1.67 16 47 H 0.09 1.71 7.78 -2.39 -0.02 1.69 16 48 H 0.07 1.91 5.72 -2.39 -0.01 1.89 16 Total: -1.00 -71.03 382.15 2.49 -68.53 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.34 Total: 28.63 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 7.07 Total: 3.78 kcal Atomic # 7 Polarization: -118.93 SS G_CDS: -5.99 Total: -124.92 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.96 Total: -23.97 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -71.03 2.49 -68.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205521752.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.839 kcal (2) G-P(sol) polarization free energy of solvation -71.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds