Wall clock time and date at job start Tue Mar 31 2020 17:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37989 * 120.82200 * 2 1 4 4 C 1.39131 * 119.26703 * 179.71170 * 3 2 1 5 5 O 1.35493 * 119.52713 * 180.32081 * 4 3 2 6 6 N 1.32433 * 120.94571 * 0.57557 * 4 3 2 7 7 C 1.31640 * 121.79893 * 359.72401 * 6 4 3 8 8 C 1.50703 * 119.68659 * 179.97438 * 7 6 4 9 9 C 1.39555 * 120.62924 * 359.97406 * 7 6 4 10 10 C 1.47621 * 120.50345 * 180.02562 * 9 7 6 11 11 O 1.21582 * 119.99549 * 270.02855 * 10 9 7 12 12 N 1.34777 * 119.99960 * 90.02031 * 10 9 7 13 13 C 1.46927 * 120.63105 * 359.72266 * 12 10 9 14 14 C 1.53621 * 108.54002 * 126.36652 * 13 12 10 15 15 C 1.53039 * 109.24102 * 54.85945 * 14 13 12 16 16 C 1.53005 * 109.45824 * 178.49018 * 15 14 13 17 17 N 1.46505 * 109.46816 * 295.06322 * 16 15 14 18 18 C 1.36938 * 119.99664 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00249 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99806 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00081 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99923 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47017 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46897 * 120.00427 * 22 20 18 25 25 H 1.48499 * 109.47135 * 240.00348 * 22 20 18 26 26 C 1.53035 * 109.53739 * 298.50503 * 15 14 13 27 27 C 1.46924 * 120.62796 * 180.02562 * 12 10 9 28 28 H 1.09002 * 109.47152 * 269.71922 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.72023 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.72004 * 1 2 3 31 31 H 1.08000 * 120.36680 * 0.02562 * 3 2 1 32 32 H 0.96700 * 114.00071 * 270.25294 * 5 4 3 33 33 H 1.09003 * 109.47532 * 269.97946 * 8 7 6 34 34 H 1.09001 * 109.46999 * 29.97968 * 8 7 6 35 35 H 1.08995 * 109.47491 * 149.97650 * 8 7 6 36 36 H 1.08995 * 109.58550 * 246.20436 * 13 12 10 37 37 H 1.09006 * 109.58153 * 6.62907 * 13 12 10 38 38 H 1.08998 * 109.63481 * 294.86334 * 14 13 12 39 39 H 1.08997 * 109.43113 * 174.72568 * 14 13 12 40 40 H 1.08999 * 109.44723 * 58.52117 * 15 14 13 41 41 H 1.08997 * 109.47405 * 55.06514 * 16 15 14 42 42 H 1.09004 * 109.47076 * 175.06907 * 16 15 14 43 43 H 0.96994 * 120.00162 * 0.02562 * 17 16 15 44 44 H 0.96996 * 119.99948 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.50181 * 301.41941 * 26 15 14 46 46 H 1.09002 * 109.52802 * 181.33324 * 26 15 14 47 47 H 1.09001 * 109.58854 * 353.37360 * 27 12 10 48 48 H 1.08999 * 109.58343 * 113.65621 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6048 1.1473 0.0061 5 8 4.3043 2.3077 0.0127 6 7 4.2548 -0.0066 0.0005 7 6 3.6205 -1.1601 -0.0057 8 6 4.4080 -2.4449 -0.0125 9 6 2.2256 -1.2044 -0.0059 10 6 1.5171 -2.4994 -0.0122 11 8 1.2258 -3.0278 -1.0678 12 7 1.1933 -3.0961 1.1521 13 6 1.5441 -2.4729 2.4356 14 6 0.2709 -2.3598 3.2878 15 6 -0.3746 -3.7414 3.4160 16 6 -1.6227 -3.6413 4.2953 17 7 -1.2322 -3.2664 5.6567 18 6 -2.1876 -3.1157 6.6260 19 1 -3.2290 -3.2735 6.3870 20 6 -1.8175 -2.7610 7.9161 21 7 -0.5484 -2.5692 8.2074 22 14 -3.1208 -2.5561 9.2386 23 1 -4.4609 -2.8267 8.6590 24 1 -2.8581 -3.5116 10.3446 25 1 -3.0792 -1.1676 9.7635 26 6 -0.7682 -4.2532 2.0285 27 6 0.4886 -4.3853 1.1619 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3633 -0.8875 -0.5182 30 1 -0.3633 0.8925 -0.5095 31 1 1.6936 2.1313 0.0004 32 1 4.5080 2.6492 -0.8687 33 1 4.5976 -2.7495 -1.0418 34 1 5.3568 -2.2922 0.5019 35 1 3.8393 -3.2224 0.4976 36 1 2.2794 -3.0896 2.9523 37 1 1.9566 -1.4795 2.2587 38 1 -0.4292 -1.6739 2.8110 39 1 0.5297 -1.9858 4.2784 40 1 0.3352 -4.4328 3.8702 41 1 -2.2940 -2.8849 3.8886 42 1 -2.1312 -4.6052 4.3156 43 1 -0.2970 -3.1244 5.8712 44 1 -0.2899 -2.3211 9.1088 45 1 -1.4586 -3.5495 1.5635 46 1 -1.2493 -5.2268 2.1222 47 1 0.2046 -4.6543 0.1445 48 1 1.1408 -5.1550 1.5748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206941617.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:00 Heat of formation + Delta-G solvation = -38.913436 kcal Electronic energy + Delta-G solvation = -29388.887279 eV Core-core repulsion = 25443.890705 eV Total energy + Delta-G solvation = -3944.996574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.36850 -39.86807 -37.92938 -37.29971 -34.97784 -34.61488 -33.02688 -32.11778 -30.99207 -30.33426 -28.37170 -28.17855 -26.64950 -24.40921 -23.39437 -23.25546 -21.81056 -21.61901 -20.45465 -19.38934 -18.68393 -17.74978 -17.45049 -17.03466 -16.37910 -15.95825 -15.06129 -14.83957 -14.62559 -14.52116 -14.24268 -14.06837 -13.79163 -13.69748 -13.59719 -13.40052 -13.36810 -12.96293 -12.79454 -12.64851 -12.45941 -12.40211 -12.28693 -12.16519 -11.92871 -11.84733 -11.22533 -11.02844 -10.87735 -10.45376 -10.43068 -10.35500 -10.23393 -9.99515 -9.84058 -9.69089 -9.67678 -9.05260 -8.90111 -8.73537 -6.94117 -5.79412 -3.07643 0.45912 0.82055 2.33412 2.80672 3.02334 3.37085 3.41310 3.47255 3.49293 4.11694 4.14604 4.27367 4.56410 4.69872 4.80754 4.84211 4.95443 4.98943 5.03049 5.11891 5.14752 5.24034 5.27131 5.30396 5.32336 5.44787 5.51944 5.55179 5.59341 5.64866 5.73603 5.78341 5.84230 5.90115 5.90683 6.04214 6.10627 6.13547 6.22810 6.36378 6.41067 6.58005 6.76374 6.87338 7.11139 7.20774 7.54908 7.68381 7.93174 8.39835 9.51167 10.08980 10.43482 11.43545 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013828 B = 0.002910 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.321716 B = 9618.899337 C =10599.419040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.013 3.987 3 C -0.194 4.194 4 C 0.331 3.669 5 O -0.480 6.480 6 N -0.506 5.506 7 C 0.192 3.808 8 C -0.111 4.111 9 C -0.186 4.186 10 C 0.575 3.425 11 O -0.537 6.537 12 N -0.597 5.597 13 C 0.105 3.895 14 C -0.123 4.123 15 C -0.094 4.094 16 C 0.159 3.841 17 N -0.732 5.732 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.125 4.125 27 C 0.112 3.888 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.402 0.598 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.017 0.983 42 H 0.019 0.981 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.871 4.076 -20.648 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.005 3.995 3 C -0.215 4.215 4 C 0.153 3.847 5 O -0.287 6.287 6 N -0.226 5.226 7 C 0.053 3.947 8 C -0.168 4.168 9 C -0.191 4.191 10 C 0.361 3.639 11 O -0.415 6.415 12 N -0.330 5.330 13 C -0.017 4.017 14 C -0.161 4.161 15 C -0.113 4.113 16 C 0.031 3.969 17 N -0.377 5.377 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.164 4.164 27 C -0.010 4.010 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.165 0.835 32 H 0.261 0.739 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.035 0.965 42 H 0.037 0.963 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.109 0.891 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.409 3.814 -20.513 22.496 hybrid contribution -1.133 0.514 0.573 1.370 sum 7.276 4.328 -19.940 21.663 Atomic orbital electron populations 1.20979 0.89178 1.04084 1.04022 1.20210 0.97074 0.90786 0.91392 1.21897 0.93746 0.99430 1.06471 1.19234 0.87036 0.85040 0.93411 1.84739 1.75957 1.33946 1.34060 1.66981 1.41821 0.97811 1.15976 1.20997 0.89065 0.93202 0.91409 1.20848 1.00501 0.91523 1.03908 1.20616 0.94874 0.94391 1.09243 1.17896 0.78375 0.83839 0.83776 1.90796 1.54794 1.65224 1.30639 1.48175 1.56701 1.22301 1.05812 1.21978 0.98239 0.98218 0.83259 1.21995 0.95578 0.97904 1.00626 1.21316 0.98865 0.96428 0.94695 1.20663 0.93314 0.97039 0.85883 1.42382 1.07265 1.83559 1.04443 1.19269 0.89301 1.38963 0.89416 0.91225 1.24729 0.96126 1.02644 0.97506 1.69659 1.14354 1.54408 1.19805 0.86133 0.80723 0.77329 0.82114 1.20589 1.21879 1.21876 1.21916 0.96756 1.02212 0.95493 1.21707 0.93622 0.83845 1.01854 0.89242 0.90469 0.90152 0.83505 0.73946 0.89509 0.89507 0.90417 0.90749 0.90418 0.91788 0.89278 0.90863 0.96471 0.96339 0.78281 0.93573 0.91545 0.90460 0.89059 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 9.69 36.01 0.35 -0.83 16 2 C 0.01 0.14 5.82 -103.96 -0.60 -0.46 16 3 C -0.19 -1.89 9.72 -39.34 -0.38 -2.28 16 4 C 0.33 3.61 7.74 -16.96 -0.13 3.48 16 5 O -0.48 -4.34 13.55 -18.17 -0.25 -4.58 16 6 N -0.51 -6.24 10.28 -9.20 -0.09 -6.33 16 7 C 0.19 2.27 6.82 -82.18 -0.56 1.71 16 8 C -0.11 -1.08 9.78 36.01 0.35 -0.73 16 9 C -0.19 -2.24 3.64 -104.82 -0.38 -2.62 16 10 C 0.57 7.44 4.21 -12.43 -0.05 7.39 16 11 O -0.54 -8.43 16.52 5.29 0.09 -8.34 16 12 N -0.60 -7.07 2.97 -173.67 -0.51 -7.59 16 13 C 0.11 1.25 6.37 -3.49 -0.02 1.23 16 14 C -0.12 -1.72 5.26 -26.39 -0.14 -1.86 16 15 C -0.09 -1.37 2.19 -90.58 -0.20 -1.57 16 16 C 0.16 3.02 5.65 -4.04 -0.02 3.00 16 17 N -0.73 -17.81 5.32 -59.90 -0.32 -18.13 16 18 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 22 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 C -0.13 -1.49 5.36 -26.59 -0.14 -1.63 16 27 C 0.11 1.25 6.43 -3.69 -0.02 1.23 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.82 7.19 -51.93 -0.37 0.44 16 30 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.40 1.49 9.06 45.56 0.41 1.90 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.75 7.07 -51.93 -0.37 0.39 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.92 6.23 -51.93 -0.32 0.59 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.46 7.15 -51.93 -0.37 1.09 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.38 9.71 6.84 -40.82 -0.28 9.43 16 44 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.09 1.06 7.00 -51.93 -0.36 0.70 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 389.12 15.07 5.86 5.86 Total: -1.00 -34.01 389.12 -8.43 -42.44 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.70 Total: 7.63 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -2.21 Total: -1.13 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.20 Total: -59.03 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.16 Total: -12.93 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.01 -8.43 -42.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206941617.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.530 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds