Wall clock time and date at job start Tue Mar 31 2020 17:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37989 * 120.82200 * 2 1 4 4 C 1.39131 * 119.26703 * 179.71170 * 3 2 1 5 5 O 1.35493 * 119.52713 * 180.32081 * 4 3 2 6 6 N 1.32433 * 120.94571 * 0.57557 * 4 3 2 7 7 C 1.31640 * 121.79893 * 359.72401 * 6 4 3 8 8 C 1.50703 * 119.68659 * 179.97438 * 7 6 4 9 9 C 1.39555 * 120.62924 * 359.97406 * 7 6 4 10 10 C 1.47621 * 120.50345 * 180.02562 * 9 7 6 11 11 O 1.21582 * 119.99549 * 270.02855 * 10 9 7 12 12 N 1.34777 * 119.99960 * 90.02031 * 10 9 7 13 13 C 1.46927 * 120.63105 * 359.72266 * 12 10 9 14 14 C 1.53621 * 108.54002 * 126.36652 * 13 12 10 15 15 C 1.53039 * 109.24102 * 54.85945 * 14 13 12 16 16 C 1.53005 * 109.45824 * 178.49018 * 15 14 13 17 17 N 1.46505 * 109.46816 * 295.06322 * 16 15 14 18 18 C 1.36938 * 119.99664 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00249 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99806 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00081 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99923 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47017 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46897 * 120.00427 * 22 20 18 25 25 H 1.48499 * 109.47135 * 240.00348 * 22 20 18 26 26 C 1.53035 * 109.53739 * 298.50503 * 15 14 13 27 27 C 1.46924 * 120.62796 * 180.02562 * 12 10 9 28 28 H 1.09002 * 109.47152 * 269.71922 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.72023 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.72004 * 1 2 3 31 31 H 1.08000 * 120.36680 * 0.02562 * 3 2 1 32 32 H 0.96700 * 114.00071 * 270.25294 * 5 4 3 33 33 H 1.09003 * 109.47532 * 269.97946 * 8 7 6 34 34 H 1.09001 * 109.46999 * 29.97968 * 8 7 6 35 35 H 1.08995 * 109.47491 * 149.97650 * 8 7 6 36 36 H 1.08995 * 109.58550 * 246.20436 * 13 12 10 37 37 H 1.09006 * 109.58153 * 6.62907 * 13 12 10 38 38 H 1.08998 * 109.63481 * 294.86334 * 14 13 12 39 39 H 1.08997 * 109.43113 * 174.72568 * 14 13 12 40 40 H 1.08999 * 109.44723 * 58.52117 * 15 14 13 41 41 H 1.08997 * 109.47405 * 55.06514 * 16 15 14 42 42 H 1.09004 * 109.47076 * 175.06907 * 16 15 14 43 43 H 0.96994 * 120.00162 * 0.02562 * 17 16 15 44 44 H 0.96996 * 119.99948 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.50181 * 301.41941 * 26 15 14 46 46 H 1.09002 * 109.52802 * 181.33324 * 26 15 14 47 47 H 1.09001 * 109.58854 * 353.37360 * 27 12 10 48 48 H 1.08999 * 109.58343 * 113.65621 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6048 1.1473 0.0061 5 8 4.3043 2.3077 0.0127 6 7 4.2548 -0.0066 0.0005 7 6 3.6205 -1.1601 -0.0057 8 6 4.4080 -2.4449 -0.0125 9 6 2.2256 -1.2044 -0.0059 10 6 1.5171 -2.4994 -0.0122 11 8 1.2258 -3.0278 -1.0678 12 7 1.1933 -3.0961 1.1521 13 6 1.5441 -2.4729 2.4356 14 6 0.2709 -2.3598 3.2878 15 6 -0.3746 -3.7414 3.4160 16 6 -1.6227 -3.6413 4.2953 17 7 -1.2322 -3.2664 5.6567 18 6 -2.1876 -3.1157 6.6260 19 1 -3.2290 -3.2735 6.3870 20 6 -1.8175 -2.7610 7.9161 21 7 -0.5484 -2.5692 8.2074 22 14 -3.1208 -2.5561 9.2386 23 1 -4.4609 -2.8267 8.6590 24 1 -2.8581 -3.5116 10.3446 25 1 -3.0792 -1.1676 9.7635 26 6 -0.7682 -4.2532 2.0285 27 6 0.4886 -4.3853 1.1619 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3633 -0.8875 -0.5182 30 1 -0.3633 0.8925 -0.5095 31 1 1.6936 2.1313 0.0004 32 1 4.5080 2.6492 -0.8687 33 1 4.5976 -2.7495 -1.0418 34 1 5.3568 -2.2922 0.5019 35 1 3.8393 -3.2224 0.4976 36 1 2.2794 -3.0896 2.9523 37 1 1.9566 -1.4795 2.2587 38 1 -0.4292 -1.6739 2.8110 39 1 0.5297 -1.9858 4.2784 40 1 0.3352 -4.4328 3.8702 41 1 -2.2940 -2.8849 3.8886 42 1 -2.1312 -4.6052 4.3156 43 1 -0.2970 -3.1244 5.8712 44 1 -0.2899 -2.3211 9.1088 45 1 -1.4586 -3.5495 1.5635 46 1 -1.2493 -5.2268 2.1222 47 1 0.2046 -4.6543 0.1445 48 1 1.1408 -5.1550 1.5748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206941617.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:59 Heat of formation + Delta-G solvation = -63.917222 kcal Electronic energy + Delta-G solvation = -29389.971525 eV Core-core repulsion = 25443.890705 eV Total energy + Delta-G solvation = -3946.080820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.24515 -40.80914 -39.00747 -38.14240 -36.55634 -35.41262 -34.52459 -33.15108 -32.13455 -31.89161 -29.16630 -29.05001 -28.03490 -25.77556 -24.66587 -24.35763 -23.12082 -22.42452 -21.63476 -20.41673 -19.46015 -19.17421 -18.59327 -18.24156 -17.40014 -16.72526 -16.69919 -16.03092 -15.71036 -15.52136 -15.42510 -15.30647 -15.21006 -14.83583 -14.52862 -14.28223 -14.25776 -14.09706 -13.96945 -13.82696 -13.50720 -13.40658 -13.18220 -13.09850 -12.96333 -12.89940 -12.77739 -12.64917 -12.23005 -12.11658 -11.95281 -11.67429 -11.56368 -11.32686 -11.23879 -10.92350 -10.66015 -10.54451 -9.87413 -9.76109 -8.96429 -7.94022 -5.21543 -0.35371 0.01551 1.34062 1.48153 1.48454 1.58326 1.85497 2.27797 2.56898 2.58279 3.25626 3.35491 3.39934 3.46124 3.75259 3.77121 3.86253 3.95105 4.07363 4.15006 4.23895 4.29342 4.32754 4.37415 4.39618 4.50361 4.55522 4.58325 4.59335 4.71075 4.78091 4.80329 4.86885 4.93476 4.94705 5.01335 5.04575 5.08248 5.10719 5.17610 5.27065 5.37696 5.48211 5.53513 5.55504 6.21283 6.29077 6.53529 6.77662 6.94144 7.35893 8.12774 8.36006 9.29463 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013828 B = 0.002910 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.321716 B = 9618.899337 C =10599.419040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.008 3.992 3 C -0.190 4.190 4 C 0.328 3.672 5 O -0.487 6.487 6 N -0.528 5.528 7 C 0.183 3.817 8 C -0.109 4.109 9 C -0.204 4.204 10 C 0.582 3.418 11 O -0.567 6.567 12 N -0.593 5.593 13 C 0.117 3.883 14 C -0.116 4.116 15 C -0.083 4.083 16 C 0.157 3.843 17 N -0.743 5.743 18 C -0.242 4.242 19 H 0.073 0.927 20 C -0.074 4.074 21 N -0.967 5.967 22 Si 0.969 3.031 23 H -0.268 1.268 24 H -0.294 1.294 25 H -0.294 1.294 26 C -0.114 4.114 27 C 0.113 3.887 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.173 0.827 32 H 0.424 0.576 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.016 0.984 42 H 0.020 0.980 43 H 0.375 0.625 44 H 0.251 0.749 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.440 4.445 -21.481 23.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.000 4.000 3 C -0.211 4.211 4 C 0.149 3.851 5 O -0.298 6.298 6 N -0.248 5.248 7 C 0.045 3.955 8 C -0.166 4.166 9 C -0.209 4.209 10 C 0.369 3.631 11 O -0.447 6.447 12 N -0.325 5.325 13 C -0.006 4.006 14 C -0.154 4.154 15 C -0.102 4.102 16 C 0.031 3.969 17 N -0.386 5.386 18 C -0.374 4.374 19 H 0.090 0.910 20 C -0.266 4.266 21 N -0.618 5.618 22 Si 0.799 3.201 23 H -0.192 1.192 24 H -0.221 1.221 25 H -0.221 1.221 26 C -0.153 4.153 27 C -0.008 4.008 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.190 0.810 32 H 0.286 0.714 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.034 0.966 42 H 0.038 0.962 43 H 0.208 0.792 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.959 4.180 -21.388 23.200 hybrid contribution -0.998 0.448 0.768 1.337 sum 6.961 4.628 -20.619 22.249 Atomic orbital electron populations 1.20981 0.88302 1.04561 1.04037 1.20442 0.97783 0.90763 0.91019 1.22117 0.93368 1.00113 1.05473 1.19472 0.87680 0.85169 0.92752 1.84689 1.75783 1.33157 1.36133 1.67012 1.42444 0.98377 1.16999 1.21235 0.89233 0.93728 0.91310 1.20873 1.00592 0.90769 1.04348 1.20632 0.95125 0.94362 1.10798 1.17978 0.77821 0.83890 0.83380 1.90776 1.56183 1.66106 1.31623 1.48174 1.56374 1.22385 1.05521 1.21846 0.97147 0.98728 0.82861 1.21862 0.96566 0.97389 0.99574 1.21194 0.96774 0.96878 0.95381 1.20821 0.95372 0.96528 0.84184 1.42575 1.06457 1.83524 1.06019 1.19641 0.90017 1.37550 0.90231 0.90955 1.25498 0.98008 1.03425 0.99679 1.69802 1.16104 1.55987 1.19913 0.85135 0.78965 0.76748 0.79298 1.19208 1.22134 1.22089 1.21824 0.97190 1.02747 0.93541 1.21757 0.93469 0.83886 1.01732 0.89314 0.91907 0.87791 0.80959 0.71355 0.88960 0.88797 0.90500 0.89792 0.90160 0.91852 0.91929 0.91129 0.96614 0.96247 0.79195 0.94062 0.91691 0.89066 0.89056 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 9.69 71.24 0.69 -1.42 16 2 C 0.01 0.16 5.82 -19.43 -0.11 0.04 16 3 C -0.19 -3.35 9.72 22.43 0.22 -3.13 16 4 C 0.33 6.68 7.74 84.82 0.66 7.33 16 5 O -0.49 -7.94 13.55 -87.94 -1.19 -9.14 16 6 N -0.53 -12.54 10.28 -295.90 -3.04 -15.58 16 7 C 0.18 4.21 6.82 42.91 0.29 4.51 16 8 C -0.11 -2.05 9.78 71.24 0.70 -1.35 16 9 C -0.20 -4.74 3.64 -19.99 -0.07 -4.82 16 10 C 0.58 14.61 4.21 86.72 0.36 14.97 16 11 O -0.57 -17.49 16.52 -3.97 -0.07 -17.56 16 12 N -0.59 -13.35 2.97 -821.65 -2.44 -15.79 16 13 C 0.12 2.65 6.37 86.51 0.55 3.20 16 14 C -0.12 -3.18 5.26 30.82 0.16 -3.02 16 15 C -0.08 -2.36 2.19 -10.77 -0.02 -2.38 16 16 C 0.16 5.90 5.65 86.38 0.49 6.38 16 17 N -0.74 -36.26 5.32 -343.43 -1.83 -38.09 16 18 C -0.24 -13.29 9.99 84.03 0.84 -12.45 16 19 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 20 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 21 N -0.97 -58.06 13.06 21.65 0.28 -57.78 16 22 Si 0.97 45.58 29.55 68.60 2.03 47.61 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 C -0.11 -2.53 5.36 30.68 0.16 -2.36 16 27 C 0.11 2.34 6.43 86.38 0.56 2.90 16 28 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.27 7.19 -2.39 -0.02 1.26 16 30 H 0.10 1.26 8.10 -2.38 -0.02 1.24 16 31 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 32 H 0.42 2.31 9.06 -74.06 -0.67 1.64 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 1.43 7.07 -2.39 -0.02 1.41 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.08 1.83 6.23 -2.38 -0.01 1.81 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 2.08 7.15 -2.39 -0.02 2.07 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.38 19.33 6.84 -92.71 -0.63 18.69 16 44 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 45 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.09 1.97 7.00 -2.39 -0.02 1.96 16 48 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -72.33 389.12 -0.63 -72.96 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: -0.32 Total: 28.64 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 5.94 Total: 4.72 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -7.02 Total: -127.23 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -1.26 Total: -26.69 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -72.33 -0.63 -72.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206941617.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.047 kcal (2) G-P(sol) polarization free energy of solvation -72.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds