Wall clock time and date at job start Tue Mar 31 2020 17:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.47201 * 109.45908 * 2 1 4 4 N 2.60807 * 109.45940 * 359.97438 * 2 1 3 5 5 C 1.53040 * 109.45912 * 240.02746 * 2 1 3 6 6 C 1.53189 * 109.30890 * 178.61555 * 5 2 1 7 7 N 1.46920 * 108.78053 * 54.63274 * 6 5 2 8 8 C 1.34777 * 120.63347 * 126.11180 * 7 6 5 9 9 O 1.21355 * 119.99958 * 354.95162 * 8 7 6 10 10 C 1.49453 * 120.00431 * 174.94878 * 8 7 6 11 11 O 1.21347 * 119.99889 * 85.41035 * 10 8 7 12 12 N 1.34780 * 119.99827 * 265.42090 * 10 8 7 13 13 C 1.46925 * 120.62995 * 4.77652 * 12 10 8 14 14 C 1.53623 * 108.54110 * 126.37423 * 13 12 10 15 15 C 1.53044 * 109.24238 * 54.85401 * 14 13 12 16 16 C 1.53034 * 109.53606 * 298.51026 * 15 14 13 17 17 H 1.09002 * 109.50401 * 301.41191 * 16 15 14 18 18 C 1.50709 * 109.52319 * 181.33186 * 16 15 14 19 19 H 1.08002 * 119.99701 * 0.15044 * 18 16 15 20 20 C 1.37874 * 119.99776 * 180.14429 * 18 16 15 21 21 N 1.31511 * 120.00688 * 0.02562 * 20 18 16 22 22 Si 1.86805 * 119.99605 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46988 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47227 * 120.00431 * 22 20 18 25 25 H 1.48503 * 109.47004 * 240.00608 * 22 20 18 26 26 C 1.46928 * 120.62844 * 185.06263 * 12 10 8 27 27 C 1.46928 * 118.74061 * 306.39188 * 7 6 5 28 28 C 1.53041 * 109.45992 * 119.95538 * 2 1 3 29 29 H 1.09003 * 109.47301 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47113 * 299.97543 * 1 2 3 31 31 H 1.09001 * 109.47478 * 59.97379 * 1 2 3 32 32 H 1.08996 * 109.49924 * 58.66444 * 5 2 1 33 33 H 1.09002 * 109.52307 * 298.57814 * 5 2 1 34 34 H 1.09003 * 109.59098 * 294.83947 * 6 5 2 35 35 H 1.09009 * 109.70448 * 174.49322 * 6 5 2 36 36 H 1.09005 * 109.58590 * 246.20612 * 13 12 10 37 37 H 1.09002 * 109.58943 * 6.63039 * 13 12 10 38 38 H 1.09002 * 109.63069 * 294.86372 * 14 13 12 39 39 H 1.08998 * 109.43072 * 174.72357 * 14 13 12 40 40 H 1.09002 * 109.45983 * 178.49065 * 15 14 13 41 41 H 1.08993 * 109.44677 * 58.52665 * 15 14 13 42 42 H 0.96997 * 120.00486 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.58446 * 353.36597 * 26 12 10 44 44 H 1.08997 * 109.58831 * 113.64938 * 26 12 10 45 45 H 1.08995 * 109.58772 * 173.38958 * 27 7 6 46 46 H 1.08997 * 109.58352 * 293.82037 * 27 7 6 47 47 H 1.09002 * 109.49626 * 301.33848 * 28 2 1 48 48 H 1.09001 * 109.49577 * 61.40137 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0204 1.3879 0.0000 4 7 2.3988 2.4591 -0.0011 5 6 2.0398 -0.7209 -1.2500 6 6 3.5713 -0.6887 -1.2641 7 7 4.0678 -1.2487 0.0002 8 6 4.9575 -2.2611 0.0004 9 8 5.2866 -2.7798 -1.0462 10 6 5.5389 -2.7449 1.2894 11 8 4.9460 -3.5727 1.9495 12 7 6.7215 -2.2616 1.7188 13 6 7.4005 -1.1844 0.9857 14 6 7.7086 -0.0440 1.9677 15 6 8.5058 -0.5985 3.1506 16 6 7.6703 -1.6512 3.8824 17 1 6.7383 -1.2020 4.2256 18 6 8.4428 -2.1735 5.0664 19 1 9.4304 -1.7911 5.2779 20 6 7.8886 -3.1393 5.8794 21 7 6.6861 -3.6052 5.6215 22 14 8.8459 -3.7861 7.3473 23 1 10.1638 -3.1054 7.4177 24 1 8.0827 -3.5186 8.5928 25 1 9.0525 -5.2491 7.1978 26 6 7.3591 -2.8061 2.9253 27 6 3.5713 -0.6883 1.2644 28 6 2.0398 -0.7205 1.2502 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5135 0.8902 31 1 -0.3634 0.5142 -0.8897 32 1 1.6572 -0.2210 -2.1398 33 1 1.6978 -1.7558 -1.2386 34 1 3.9143 0.3408 -1.3674 35 1 3.9437 -1.2833 -2.0984 36 1 8.3290 -1.5626 0.5577 37 1 6.7515 -0.8182 0.1902 38 1 6.7763 0.3902 2.3289 39 1 8.2951 0.7224 1.4610 40 1 8.7495 0.2129 3.8365 41 1 9.4262 -1.0545 2.7860 42 1 6.2964 -4.2850 6.1933 43 1 6.6827 -3.5102 3.4099 44 1 8.2829 -3.3160 2.6519 45 1 3.9416 -1.2842 2.0986 46 1 3.9142 0.3412 1.3673 47 1 1.6571 -0.2203 2.1399 48 1 1.6973 -1.7552 1.2389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261615861.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:28 Heat of formation + Delta-G solvation = -47.852805 kcal Electronic energy + Delta-G solvation = -30293.417353 eV Core-core repulsion = 26348.033139 eV Total energy + Delta-G solvation = -3945.384214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.98489 -39.48391 -38.14851 -36.77217 -36.06281 -34.25853 -33.45818 -31.90984 -31.64093 -29.93568 -28.95292 -26.12015 -25.12150 -24.21501 -23.85982 -22.95018 -21.95968 -21.59142 -19.59157 -18.76534 -17.52163 -16.92540 -16.48681 -16.20357 -15.97880 -15.34792 -15.00699 -14.88087 -14.70569 -14.59193 -14.18627 -14.07813 -13.80377 -13.53813 -13.39007 -13.13934 -12.93315 -12.72459 -12.69707 -12.59415 -12.35757 -12.29208 -12.23291 -12.00433 -11.79821 -11.62732 -11.14383 -11.08758 -11.00530 -10.95908 -10.86102 -10.55651 -10.45799 -10.32240 -9.99498 -9.30664 -9.21782 -8.97508 -8.87734 -8.51574 -7.96455 -6.06924 -4.15356 2.29609 2.40702 2.50557 2.52952 2.97908 3.26735 3.35756 3.38503 3.50699 3.61971 4.21651 4.25908 4.37789 4.40337 4.46708 4.66639 4.93076 4.97905 5.15866 5.18136 5.19281 5.24136 5.27854 5.35540 5.37311 5.44878 5.55075 5.57850 5.58901 5.67620 5.70609 5.80995 5.90905 6.06925 6.21616 6.22432 6.49011 6.54809 6.74222 6.87144 6.96083 7.04607 7.08046 7.29821 7.50831 7.75414 7.84071 7.87454 8.01378 8.27263 8.45793 8.88653 9.50933 10.98596 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016043 B = 0.003383 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.880163 B = 8274.761824 C = 8465.473847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.035 3.965 3 C 0.214 3.786 4 N -0.430 5.430 5 C -0.122 4.122 6 C 0.105 3.895 7 N -0.601 5.601 8 C 0.522 3.478 9 O -0.519 6.519 10 C 0.505 3.495 11 O -0.510 6.510 12 N -0.585 5.585 13 C 0.108 3.892 14 C -0.131 4.131 15 C -0.112 4.112 16 C 0.042 3.958 17 H 0.031 0.969 18 C -0.520 4.520 19 H 0.060 0.940 20 C 0.064 3.936 21 N -0.881 5.881 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.110 3.890 27 C 0.099 3.901 28 C -0.122 4.122 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.264 0.736 43 H 0.126 0.874 44 H 0.049 0.951 45 H 0.102 0.898 46 H 0.072 0.928 47 H 0.091 0.909 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.962 7.160 -12.769 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.031 3.969 3 C -0.104 4.104 4 N -0.104 5.104 5 C -0.161 4.161 6 C -0.018 4.018 7 N -0.337 5.337 8 C 0.306 3.694 9 O -0.394 6.394 10 C 0.286 3.714 11 O -0.385 6.385 12 N -0.318 5.318 13 C -0.016 4.016 14 C -0.169 4.169 15 C -0.149 4.149 16 C 0.023 3.977 17 H 0.049 0.951 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.139 4.139 21 N -0.518 5.518 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.010 4.010 27 C -0.023 4.023 28 C -0.162 4.162 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.144 0.856 44 H 0.067 0.933 45 H 0.121 0.879 46 H 0.091 0.909 47 H 0.109 0.891 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.627 7.916 -12.897 18.491 hybrid contribution 0.366 -0.669 0.776 1.088 sum -10.261 7.247 -12.122 17.457 Atomic orbital electron populations 1.21876 0.90857 1.03904 1.03204 1.18400 0.96955 0.83241 0.98275 1.29048 0.93337 0.94607 0.93446 1.81249 1.08718 1.12391 1.08038 1.22064 0.95615 1.02181 0.96245 1.21699 0.93449 0.99356 0.87269 1.48140 1.43529 1.34419 1.07581 1.20819 0.79162 0.78888 0.90520 1.90746 1.61021 1.55428 1.32199 1.19954 0.82827 0.83702 0.84943 1.90838 1.60205 1.33090 1.54358 1.48602 1.19692 1.35418 1.28126 1.21795 0.97482 0.88275 0.94016 1.22010 1.00963 0.96454 0.97481 1.21645 0.98472 0.99446 0.95361 1.18971 0.95654 0.90791 0.92317 0.95126 1.21104 1.02575 1.22379 1.09837 0.92185 1.25043 0.94873 0.96355 0.97673 1.69867 1.14636 1.28908 1.38415 0.86528 0.80092 0.78780 0.82574 1.19777 1.20974 1.20929 1.22502 0.97403 0.99896 0.81170 1.21894 0.94107 1.00100 0.86229 1.22069 0.95303 1.02451 0.96330 0.90136 0.91374 0.91548 0.89462 0.88792 0.91295 0.87885 0.91214 0.91725 0.92094 0.91929 0.92730 0.92963 0.92613 0.85631 0.93291 0.87949 0.90929 0.89078 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 8.43 37.16 0.31 -0.36 16 2 C 0.03 0.25 0.72 -157.25 -0.11 0.14 16 3 C 0.21 2.09 11.42 -20.76 -0.24 1.85 16 4 N -0.43 -5.38 18.54 42.16 0.78 -4.60 16 5 C -0.12 -0.83 4.88 -26.61 -0.13 -0.96 16 6 C 0.10 1.03 6.09 -3.72 -0.02 1.00 16 7 N -0.60 -7.69 2.97 -173.28 -0.51 -8.21 16 8 C 0.52 8.79 5.49 -11.58 -0.06 8.73 16 9 O -0.52 -9.70 16.51 5.49 0.09 -9.61 16 10 C 0.50 10.09 5.61 -11.58 -0.06 10.02 16 11 O -0.51 -11.91 16.31 5.50 0.09 -11.82 16 12 N -0.58 -11.51 2.97 -173.01 -0.51 -12.03 16 13 C 0.11 1.73 6.35 -3.49 -0.02 1.71 16 14 C -0.13 -2.05 6.10 -26.38 -0.16 -2.21 16 15 C -0.11 -2.11 5.11 -26.69 -0.14 -2.25 16 16 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 17 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 18 C -0.52 -13.52 8.57 -34.44 -0.29 -13.82 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 21 N -0.88 -24.54 11.39 55.43 0.63 -23.91 16 22 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.11 2.54 5.41 -3.71 -0.02 2.52 16 27 C 0.10 1.18 5.98 -3.71 -0.02 1.16 16 28 C -0.12 -1.04 4.88 -26.61 -0.13 -1.17 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.66 7.38 -51.93 -0.38 0.28 16 35 H 0.10 1.08 6.99 -51.92 -0.36 0.71 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.95 6.37 -51.93 -0.33 0.62 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.13 3.38 5.11 -51.93 -0.27 3.12 16 44 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.10 1.51 6.23 -51.93 -0.32 1.18 16 46 H 0.07 0.85 7.38 -51.93 -0.38 0.46 16 47 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -32.08 381.62 -7.62 -39.70 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -7.51 Total: 0.38 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -1.40 Total: 8.73 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 0.38 Total: -48.74 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: 0.18 Total: -21.43 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.08 -7.62 -39.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261615861.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.156 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds