Wall clock time and date at job start Tue Mar 31 2020 17:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.47201 * 109.45908 * 2 1 4 4 N 2.60807 * 109.45940 * 359.97438 * 2 1 3 5 5 C 1.53040 * 109.45912 * 240.02746 * 2 1 3 6 6 C 1.53189 * 109.30890 * 178.61555 * 5 2 1 7 7 N 1.46920 * 108.78053 * 54.63274 * 6 5 2 8 8 C 1.34777 * 120.63347 * 126.11180 * 7 6 5 9 9 O 1.21355 * 119.99958 * 354.95162 * 8 7 6 10 10 C 1.49453 * 120.00431 * 174.94878 * 8 7 6 11 11 O 1.21347 * 119.99889 * 85.41035 * 10 8 7 12 12 N 1.34780 * 119.99827 * 265.42090 * 10 8 7 13 13 C 1.46925 * 120.62995 * 4.77652 * 12 10 8 14 14 C 1.53623 * 108.54110 * 126.37423 * 13 12 10 15 15 C 1.53044 * 109.24238 * 54.85401 * 14 13 12 16 16 C 1.53034 * 109.53606 * 298.51026 * 15 14 13 17 17 H 1.09002 * 109.50401 * 301.41191 * 16 15 14 18 18 C 1.50709 * 109.52319 * 181.33186 * 16 15 14 19 19 H 1.08002 * 119.99701 * 0.15044 * 18 16 15 20 20 C 1.37874 * 119.99776 * 180.14429 * 18 16 15 21 21 N 1.31511 * 120.00688 * 0.02562 * 20 18 16 22 22 Si 1.86805 * 119.99605 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46988 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47227 * 120.00431 * 22 20 18 25 25 H 1.48503 * 109.47004 * 240.00608 * 22 20 18 26 26 C 1.46928 * 120.62844 * 185.06263 * 12 10 8 27 27 C 1.46928 * 118.74061 * 306.39188 * 7 6 5 28 28 C 1.53041 * 109.45992 * 119.95538 * 2 1 3 29 29 H 1.09003 * 109.47301 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47113 * 299.97543 * 1 2 3 31 31 H 1.09001 * 109.47478 * 59.97379 * 1 2 3 32 32 H 1.08996 * 109.49924 * 58.66444 * 5 2 1 33 33 H 1.09002 * 109.52307 * 298.57814 * 5 2 1 34 34 H 1.09003 * 109.59098 * 294.83947 * 6 5 2 35 35 H 1.09009 * 109.70448 * 174.49322 * 6 5 2 36 36 H 1.09005 * 109.58590 * 246.20612 * 13 12 10 37 37 H 1.09002 * 109.58943 * 6.63039 * 13 12 10 38 38 H 1.09002 * 109.63069 * 294.86372 * 14 13 12 39 39 H 1.08998 * 109.43072 * 174.72357 * 14 13 12 40 40 H 1.09002 * 109.45983 * 178.49065 * 15 14 13 41 41 H 1.08993 * 109.44677 * 58.52665 * 15 14 13 42 42 H 0.96997 * 120.00486 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.58446 * 353.36597 * 26 12 10 44 44 H 1.08997 * 109.58831 * 113.64938 * 26 12 10 45 45 H 1.08995 * 109.58772 * 173.38958 * 27 7 6 46 46 H 1.08997 * 109.58352 * 293.82037 * 27 7 6 47 47 H 1.09002 * 109.49626 * 301.33848 * 28 2 1 48 48 H 1.09001 * 109.49577 * 61.40137 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0204 1.3879 0.0000 4 7 2.3988 2.4591 -0.0011 5 6 2.0398 -0.7209 -1.2500 6 6 3.5713 -0.6887 -1.2641 7 7 4.0678 -1.2487 0.0002 8 6 4.9575 -2.2611 0.0004 9 8 5.2866 -2.7798 -1.0462 10 6 5.5389 -2.7449 1.2894 11 8 4.9460 -3.5727 1.9495 12 7 6.7215 -2.2616 1.7188 13 6 7.4005 -1.1844 0.9857 14 6 7.7086 -0.0440 1.9677 15 6 8.5058 -0.5985 3.1506 16 6 7.6703 -1.6512 3.8824 17 1 6.7383 -1.2020 4.2256 18 6 8.4428 -2.1735 5.0664 19 1 9.4304 -1.7911 5.2779 20 6 7.8886 -3.1393 5.8794 21 7 6.6861 -3.6052 5.6215 22 14 8.8459 -3.7861 7.3473 23 1 10.1638 -3.1054 7.4177 24 1 8.0827 -3.5186 8.5928 25 1 9.0525 -5.2491 7.1978 26 6 7.3591 -2.8061 2.9253 27 6 3.5713 -0.6883 1.2644 28 6 2.0398 -0.7205 1.2502 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5135 0.8902 31 1 -0.3634 0.5142 -0.8897 32 1 1.6572 -0.2210 -2.1398 33 1 1.6978 -1.7558 -1.2386 34 1 3.9143 0.3408 -1.3674 35 1 3.9437 -1.2833 -2.0984 36 1 8.3290 -1.5626 0.5577 37 1 6.7515 -0.8182 0.1902 38 1 6.7763 0.3902 2.3289 39 1 8.2951 0.7224 1.4610 40 1 8.7495 0.2129 3.8365 41 1 9.4262 -1.0545 2.7860 42 1 6.2964 -4.2850 6.1933 43 1 6.6827 -3.5102 3.4099 44 1 8.2829 -3.3160 2.6519 45 1 3.9416 -1.2842 2.0986 46 1 3.9142 0.3412 1.3673 47 1 1.6571 -0.2203 2.1399 48 1 1.6973 -1.7552 1.2389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261615861.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:27 Heat of formation + Delta-G solvation = -67.819099 kcal Electronic energy + Delta-G solvation = -30294.283157 eV Core-core repulsion = 26348.033139 eV Total energy + Delta-G solvation = -3946.250018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.23489 -40.65375 -39.43615 -38.41379 -37.01893 -35.35685 -35.11583 -33.56910 -32.45120 -31.66124 -29.77970 -27.63068 -26.86144 -25.25939 -24.71274 -23.92418 -23.54257 -22.70437 -21.11854 -20.08448 -19.00288 -18.38529 -18.05934 -17.58038 -17.12882 -16.53445 -16.14463 -16.04703 -15.91849 -15.75911 -15.47747 -15.29529 -15.03696 -14.85299 -14.61789 -14.43179 -14.40234 -14.01265 -13.80604 -13.67184 -13.56373 -13.43777 -12.91854 -12.87681 -12.85041 -12.75728 -12.58844 -12.48359 -12.33715 -12.27584 -12.24784 -11.90770 -11.76046 -11.68847 -11.54011 -11.10676 -10.98842 -10.59572 -10.51451 -9.99179 -9.64565 -8.10988 -6.26809 0.93087 1.04876 1.41378 1.44246 1.49242 1.54894 1.73894 1.77686 2.25053 2.43613 2.81943 3.05033 3.18428 3.52856 3.61734 3.77387 3.85220 3.88995 4.01670 4.09513 4.21831 4.23782 4.42089 4.49138 4.57152 4.61586 4.66363 4.68881 4.69789 4.75520 4.81426 4.97051 4.99207 5.03099 5.05108 5.13627 5.14237 5.19821 5.26164 5.30041 5.38425 5.39291 5.58575 5.83738 5.85945 5.94316 6.28170 6.32532 6.55174 6.57568 6.80512 6.88261 7.43332 8.92906 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016043 B = 0.003383 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.880163 B = 8274.761824 C = 8465.473847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.042 3.958 3 C 0.236 3.764 4 N -0.479 5.479 5 C -0.116 4.116 6 C 0.099 3.901 7 N -0.585 5.585 8 C 0.531 3.469 9 O -0.540 6.540 10 C 0.498 3.502 11 O -0.555 6.555 12 N -0.587 5.587 13 C 0.105 3.895 14 C -0.121 4.121 15 C -0.106 4.106 16 C 0.042 3.958 17 H -0.003 1.003 18 C -0.534 4.534 19 H 0.062 0.938 20 C 0.014 3.986 21 N -0.912 5.912 22 Si 0.954 3.046 23 H -0.263 1.263 24 H -0.282 1.282 25 H -0.284 1.284 26 C 0.123 3.877 27 C 0.097 3.903 28 C -0.119 4.119 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.102 0.898 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.261 0.739 43 H 0.085 0.915 44 H 0.043 0.957 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.103 0.897 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.597 8.602 -14.390 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.039 3.961 3 C -0.082 4.082 4 N -0.154 5.154 5 C -0.155 4.155 6 C -0.022 4.022 7 N -0.319 5.319 8 C 0.314 3.686 9 O -0.417 6.417 10 C 0.281 3.719 11 O -0.433 6.433 12 N -0.320 5.320 13 C -0.017 4.017 14 C -0.159 4.159 15 C -0.143 4.143 16 C 0.023 3.977 17 H 0.015 0.985 18 C -0.573 4.573 19 H 0.080 0.920 20 C -0.185 4.185 21 N -0.550 5.550 22 Si 0.780 3.220 23 H -0.187 1.187 24 H -0.208 1.208 25 H -0.210 1.210 26 C 0.002 3.998 27 C -0.026 4.026 28 C -0.158 4.158 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.135 0.865 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.121 0.879 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.122 0.878 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.268 9.425 -14.541 20.669 hybrid contribution 0.551 -1.087 1.295 1.778 sum -10.717 8.338 -13.245 18.969 Atomic orbital electron populations 1.21904 0.88332 1.05294 1.03977 1.18529 0.98711 0.81370 0.97524 1.29493 0.91968 0.94749 0.91968 1.81279 1.10429 1.14047 1.09626 1.22118 0.92936 1.03249 0.97213 1.22005 0.95767 0.99197 0.85206 1.48158 1.41774 1.32696 1.09314 1.20062 0.80065 0.80002 0.88470 1.90739 1.62315 1.56656 1.32012 1.20617 0.82506 0.82989 0.85818 1.90798 1.61315 1.35045 1.56158 1.48591 1.19846 1.36113 1.27408 1.22061 0.98156 0.87299 0.94210 1.21953 1.00855 0.96891 0.96191 1.21529 0.98272 0.98176 0.96341 1.18885 0.94620 0.91866 0.92337 0.98532 1.21505 1.02763 1.22232 1.10793 0.91992 1.25812 0.95634 0.96762 1.00323 1.70041 1.16194 1.29451 1.39358 0.85559 0.79126 0.77965 0.79336 1.18702 1.20805 1.20990 1.21965 0.96142 0.99203 0.82531 1.21955 0.96688 0.99239 0.84696 1.22086 0.92370 1.03394 0.97948 0.88458 0.91226 0.90280 0.86489 0.87704 0.90639 0.88112 0.89777 0.89882 0.92512 0.87925 0.92379 0.92348 0.92987 0.89679 0.93901 0.91338 0.90563 0.87825 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.43 71.98 0.61 -0.20 16 2 C 0.04 0.48 0.72 -53.96 -0.04 0.44 16 3 C 0.24 4.07 11.42 89.44 1.02 5.09 16 4 N -0.48 -11.25 18.54 20.01 0.37 -10.88 16 5 C -0.12 -1.18 4.88 30.67 0.15 -1.03 16 6 C 0.10 1.71 6.09 86.36 0.53 2.24 16 7 N -0.59 -14.41 2.97 -820.48 -2.44 -16.84 16 8 C 0.53 17.83 5.49 87.27 0.48 18.31 16 9 O -0.54 -19.91 16.51 -3.26 -0.05 -19.96 16 10 C 0.50 20.65 5.61 87.27 0.49 21.14 16 11 O -0.55 -27.51 16.31 -3.24 -0.05 -27.56 16 12 N -0.59 -23.71 2.97 -819.63 -2.43 -26.14 16 13 C 0.10 3.23 6.35 86.51 0.55 3.78 16 14 C -0.12 -3.56 6.10 30.82 0.19 -3.37 16 15 C -0.11 -3.92 5.11 30.62 0.16 -3.77 16 16 C 0.04 2.03 2.25 -11.46 -0.03 2.01 16 17 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 18 C -0.53 -28.40 8.57 25.60 0.22 -28.18 16 19 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 20 C 0.01 0.79 5.30 84.65 0.45 1.24 16 21 N -0.91 -53.15 11.39 21.45 0.24 -52.90 16 22 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 C 0.12 5.96 5.41 86.36 0.47 6.43 16 27 C 0.10 2.26 5.98 86.36 0.52 2.78 16 28 C -0.12 -1.83 4.88 30.67 0.15 -1.68 16 29 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.26 7.38 -2.39 -0.02 1.24 16 35 H 0.10 1.87 6.99 -2.38 -0.02 1.86 16 36 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 37 H 0.08 2.28 6.37 -2.39 -0.02 2.27 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.08 4.89 5.11 -2.39 -0.01 4.88 16 44 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.07 2.12 6.23 -2.39 -0.01 2.11 16 46 H 0.08 1.73 7.38 -2.39 -0.02 1.72 16 47 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -74.18 381.62 4.53 -69.65 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.96 Total: 14.31 kcal Atomic # 6 Polarization: 19.31 SS G_CDS: 5.90 Total: 25.22 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -4.25 Total: -106.77 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -0.11 Total: -47.53 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -74.18 4.53 -69.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261615861.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.829 kcal (2) G-P(sol) polarization free energy of solvation -74.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds