Wall clock time and date at job start Tue Mar 31 2020 18:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35471 * 119.62133 * 2 1 4 4 C 1.41180 * 119.17794 * 180.27388 * 3 2 1 5 5 N 1.34679 * 120.73691 * 179.72198 * 4 3 2 6 6 C 1.32556 * 120.00140 * 175.44678 * 5 4 3 7 7 O 1.21910 * 119.99589 * 65.42249 * 6 5 4 8 8 C 1.49101 * 120.00114 * 245.42687 * 6 5 4 9 9 O 1.21402 * 119.99673 * 359.62209 * 8 6 5 10 10 N 1.34772 * 119.99843 * 179.62450 * 8 6 5 11 11 C 1.46498 * 120.00098 * 354.59605 * 10 8 6 12 12 C 1.50705 * 109.46959 * 83.95042 * 11 10 8 13 13 H 1.07993 * 120.00025 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99942 * 179.97438 * 12 11 10 15 15 N 1.31523 * 120.00125 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00121 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47169 * 60.00441 * 16 14 12 18 18 H 1.48503 * 109.47409 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47298 * 300.00355 * 16 14 12 20 20 C 1.46500 * 119.99747 * 174.59477 * 10 8 6 21 21 C 1.53000 * 109.46992 * 94.78073 * 20 10 8 22 22 C 1.53002 * 109.47323 * 180.02562 * 21 20 10 23 23 C 1.53000 * 109.47356 * 64.99540 * 22 21 20 24 24 C 1.53001 * 109.47377 * 185.00306 * 22 21 20 25 25 C 1.41183 * 118.52345 * 359.45555 * 4 3 2 26 26 C 1.35464 * 119.17606 * 0.27174 * 25 4 3 27 27 N 1.34784 * 120.76186 * 359.97438 * 26 25 4 28 28 H 0.96996 * 119.19698 * 180.02562 * 27 26 25 29 29 H 1.08996 * 109.46934 * 270.27897 * 1 2 3 30 30 H 1.08995 * 109.47617 * 30.27886 * 1 2 3 31 31 H 1.09004 * 109.47092 * 150.28656 * 1 2 3 32 32 H 1.08002 * 120.41018 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.47033 * 203.95016 * 11 10 8 34 34 H 1.08995 * 109.47168 * 323.94772 * 11 10 8 35 35 H 0.96993 * 120.00181 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.47401 * 214.78079 * 20 10 8 37 37 H 1.09001 * 109.47134 * 334.78012 * 20 10 8 38 38 H 1.09004 * 109.46962 * 299.99729 * 21 20 10 39 39 H 1.09001 * 109.47231 * 59.99998 * 21 20 10 40 40 H 1.09000 * 109.46795 * 304.99972 * 22 21 20 41 41 H 1.09000 * 109.46816 * 60.00444 * 23 22 21 42 42 H 1.08999 * 109.47149 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.47251 * 300.00589 * 23 22 21 44 44 H 1.08997 * 109.47395 * 59.99646 * 24 22 21 45 45 H 1.09004 * 109.47061 * 180.02562 * 24 22 21 46 46 H 1.09000 * 109.46885 * 299.99611 * 24 22 21 47 47 H 1.07993 * 120.40992 * 180.29046 * 25 4 3 48 48 H 1.08002 * 119.61571 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1766 1.1777 0.0000 4 6 3.5884 1.1667 -0.0059 5 7 4.2856 2.3190 -0.0117 6 6 5.6082 2.2938 0.0740 7 8 6.2679 1.8018 -0.8254 8 6 6.2888 2.8672 1.2702 9 8 5.6321 3.3633 2.1626 10 7 7.6331 2.8348 1.3607 11 6 8.4191 2.1326 0.3432 12 6 8.6422 3.0437 -0.8364 13 1 8.2393 4.0456 -0.8286 14 6 9.3617 2.5984 -1.9249 15 7 9.8528 1.3783 -1.9342 16 14 9.6389 3.7278 -3.3867 17 1 10.3730 4.9402 -2.9432 18 1 10.4356 3.0160 -4.4182 19 1 8.3283 4.1251 -3.9610 20 6 8.3084 3.5018 2.4767 21 6 8.5688 2.4893 3.5938 22 6 9.2734 3.1860 4.7595 23 6 8.3374 4.2308 5.3703 24 6 9.6454 2.1506 5.8229 25 6 4.2530 -0.0789 0.0002 26 6 3.5203 -1.2183 0.0058 27 7 2.1732 -1.1717 0.0062 28 1 1.6711 -2.0015 0.0106 29 1 -0.3633 0.0050 1.0276 30 1 -0.3634 0.8874 -0.5181 31 1 -0.3633 -0.8926 -0.5094 32 1 1.6371 2.1133 0.0004 33 1 9.3813 1.8412 0.7644 34 1 7.8803 1.2426 0.0181 35 1 10.3587 1.0649 -2.7002 36 1 9.2565 3.9153 2.1328 37 1 7.6772 4.3059 2.8550 38 1 7.6206 2.0759 3.9377 39 1 9.2000 1.6852 3.2155 40 1 10.1774 3.6756 4.3973 41 1 7.4335 3.7413 5.7325 42 1 8.8396 4.7275 6.2005 43 1 8.0725 4.9684 4.6127 44 1 10.3122 1.4063 5.3878 45 1 10.1470 2.6471 6.6536 46 1 8.7414 1.6611 6.1851 47 1 5.3320 -0.1227 0.0007 48 1 4.0214 -2.1750 0.0109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262704305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:54 Heat of formation + Delta-G solvation = -7.898251 kcal Electronic energy + Delta-G solvation = -29112.532798 eV Core-core repulsion = 25168.881143 eV Total energy + Delta-G solvation = -3943.651655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.99373 -39.58485 -37.72615 -36.35571 -35.17510 -34.18343 -33.31730 -32.28363 -30.57243 -29.19700 -28.10061 -26.96567 -26.81289 -24.91387 -23.40077 -23.09437 -22.73899 -20.70173 -19.67982 -18.87641 -18.30129 -16.88604 -16.52200 -16.24209 -15.78337 -15.25717 -15.13338 -14.97696 -14.87411 -14.38213 -14.30099 -13.96318 -13.57072 -13.33773 -13.20552 -13.18264 -13.08603 -12.65600 -12.36817 -12.24034 -12.07662 -11.96718 -11.85105 -11.54065 -11.40762 -11.22511 -10.94325 -10.84796 -10.70813 -10.63507 -10.40465 -10.19659 -10.11345 -9.76627 -9.54301 -9.48911 -9.20898 -8.33170 -7.98531 -7.58629 -7.24264 -5.88823 -3.88533 0.99019 1.27620 2.32138 2.71636 3.42965 3.45272 3.46257 3.52286 3.86295 4.17248 4.25483 4.50333 4.59634 4.74024 5.02280 5.03450 5.13409 5.14730 5.19120 5.20100 5.27748 5.41164 5.47851 5.53680 5.66120 5.74953 5.77710 5.88846 5.95525 6.03620 6.07902 6.12481 6.16926 6.26122 6.31992 6.40236 6.45705 6.66821 6.68856 6.75364 6.75720 6.93151 7.01476 7.47864 7.66436 8.02790 8.21258 8.34353 8.38504 8.70670 9.07586 9.18832 9.72839 11.20223 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007471 B = 0.004394 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3746.753724 B = 6370.439651 C = 9061.861703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.143 3.857 3 C -0.189 4.189 4 C 0.301 3.699 5 N -0.602 5.602 6 C 0.468 3.532 7 O -0.432 6.432 8 C 0.498 3.502 9 O -0.548 6.548 10 N -0.572 5.572 11 C 0.236 3.764 12 C -0.505 4.505 13 H 0.052 0.948 14 C 0.067 3.933 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.115 3.885 21 C -0.127 4.127 22 C -0.094 4.094 23 C -0.147 4.147 24 C -0.144 4.144 25 C -0.245 4.245 26 C 0.129 3.871 27 N -0.584 5.584 28 H 0.416 0.584 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.029 0.971 34 H 0.058 0.942 35 H 0.260 0.740 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.149 0.851 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.815 -9.068 9.362 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.032 3.968 3 C -0.216 4.216 4 C 0.141 3.859 5 N -0.338 5.338 6 C 0.248 3.752 7 O -0.302 6.302 8 C 0.281 3.719 9 O -0.428 6.428 10 N -0.303 5.303 11 C 0.117 3.883 12 C -0.544 4.544 13 H 0.070 0.930 14 C -0.134 4.134 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.008 4.008 21 C -0.165 4.165 22 C -0.113 4.113 23 C -0.205 4.205 24 C -0.201 4.201 25 C -0.273 4.273 26 C -0.001 4.001 27 N -0.189 5.189 28 H 0.251 0.749 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.168 0.832 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.167 0.833 48 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.561 -8.211 9.141 19.828 hybrid contribution 0.645 -0.199 -1.006 1.212 sum -14.916 -8.410 8.134 18.957 Atomic orbital electron populations 1.20985 0.87830 1.04653 1.04117 1.20162 0.94674 0.85631 0.96344 1.20440 0.92471 0.97173 1.11484 1.18692 0.92779 0.87928 0.86538 1.68349 1.08004 1.25408 1.32012 1.21131 0.87066 0.79475 0.87497 1.91047 1.67605 1.35251 1.36248 1.20386 0.83068 0.80997 0.87467 1.90602 1.65162 1.46372 1.40670 1.48357 1.05231 1.51201 1.25549 1.19777 0.90585 0.93332 0.84632 1.21215 1.32728 0.99030 1.01407 0.92973 1.24777 0.95688 0.95037 0.97878 1.69909 1.36589 1.16312 1.30745 0.86660 0.78126 0.80712 0.82504 1.20398 1.21329 1.20324 1.21478 0.97825 0.95088 0.86424 1.21987 1.00601 0.98954 0.95000 1.21054 0.98715 0.96246 0.95293 1.21879 0.99285 0.98889 1.00400 1.21818 1.01094 0.98871 0.98364 1.21903 1.02182 0.92122 1.11080 1.21583 0.82225 1.00647 0.95640 1.40602 1.06168 1.08571 1.63598 0.74891 0.89465 0.88820 0.90737 0.83163 0.95316 0.92440 0.93060 0.90459 0.90583 0.92049 0.91651 0.91112 0.92783 0.93294 0.92231 0.92742 0.93071 0.92960 0.83335 0.81529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.43 10.06 36.01 0.36 -0.06 16 2 C 0.14 1.13 6.79 -82.28 -0.56 0.57 16 3 C -0.19 -2.40 9.62 -39.45 -0.38 -2.78 16 4 C 0.30 5.33 6.60 -84.38 -0.56 4.77 16 5 N -0.60 -13.73 10.26 -10.81 -0.11 -13.84 16 6 C 0.47 11.85 6.01 -12.73 -0.08 11.77 16 7 O -0.43 -11.94 11.66 5.00 0.06 -11.88 16 8 C 0.50 12.60 7.66 -11.75 -0.09 12.51 16 9 O -0.55 -14.14 16.46 5.45 0.09 -14.05 16 10 N -0.57 -13.89 2.47 -175.70 -0.43 -14.33 16 11 C 0.24 6.39 4.78 -5.19 -0.02 6.37 16 12 C -0.50 -15.00 7.79 -34.44 -0.27 -15.27 16 13 H 0.05 1.60 7.81 -52.49 -0.41 1.19 16 14 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 15 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 16 Si 0.89 23.17 29.54 -169.99 -5.02 18.15 16 17 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 19 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 20 C 0.12 2.34 5.15 -4.04 -0.02 2.32 16 21 C -0.13 -2.18 5.01 -26.73 -0.13 -2.32 16 22 C -0.09 -1.31 2.92 -90.62 -0.26 -1.58 16 23 C -0.15 -1.97 8.95 37.16 0.33 -1.64 16 24 C -0.14 -1.74 9.19 37.16 0.34 -1.40 16 25 C -0.25 -3.78 9.06 -39.45 -0.36 -4.14 16 26 C 0.13 1.18 11.14 -17.25 -0.19 0.99 16 27 N -0.58 -3.67 5.18 -9.53 -0.05 -3.72 16 28 H 0.42 0.81 8.74 -40.82 -0.36 0.45 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.33 8.07 -51.93 -0.42 -0.09 16 31 H 0.07 0.12 8.13 -51.93 -0.42 -0.31 16 32 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.03 0.79 8.03 -51.93 -0.42 0.37 16 34 H 0.06 1.67 5.83 -51.93 -0.30 1.37 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.08 1.55 8.11 -51.93 -0.42 1.13 16 37 H 0.08 1.54 5.78 -51.93 -0.30 1.24 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.85 6.56 -51.93 -0.34 0.51 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.15 2.72 6.41 -52.49 -0.34 2.39 16 48 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 397.56 15.07 5.99 5.99 Total: -1.00 -40.31 397.56 -8.24 -48.54 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.51 Total: -0.44 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: -1.98 Total: 12.03 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 0.14 Total: -58.33 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: 0.15 Total: -25.94 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -40.31 -8.24 -48.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262704305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.646 kcal (2) G-P(sol) polarization free energy of solvation -40.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds