Wall clock time and date at job start Tue Mar 31 2020 18:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35471 * 119.62133 * 2 1 4 4 C 1.41180 * 119.17794 * 180.27388 * 3 2 1 5 5 N 1.34679 * 120.73691 * 179.72198 * 4 3 2 6 6 C 1.32556 * 120.00140 * 175.44678 * 5 4 3 7 7 O 1.21910 * 119.99589 * 65.42249 * 6 5 4 8 8 C 1.49101 * 120.00114 * 245.42687 * 6 5 4 9 9 O 1.21402 * 119.99673 * 359.62209 * 8 6 5 10 10 N 1.34772 * 119.99843 * 179.62450 * 8 6 5 11 11 C 1.46498 * 120.00098 * 354.59605 * 10 8 6 12 12 C 1.50705 * 109.46959 * 83.95042 * 11 10 8 13 13 H 1.07993 * 120.00025 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99942 * 179.97438 * 12 11 10 15 15 N 1.31523 * 120.00125 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00121 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47169 * 60.00441 * 16 14 12 18 18 H 1.48503 * 109.47409 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47298 * 300.00355 * 16 14 12 20 20 C 1.46500 * 119.99747 * 174.59477 * 10 8 6 21 21 C 1.53000 * 109.46992 * 94.78073 * 20 10 8 22 22 C 1.53002 * 109.47323 * 180.02562 * 21 20 10 23 23 C 1.53000 * 109.47356 * 64.99540 * 22 21 20 24 24 C 1.53001 * 109.47377 * 185.00306 * 22 21 20 25 25 C 1.41183 * 118.52345 * 359.45555 * 4 3 2 26 26 C 1.35464 * 119.17606 * 0.27174 * 25 4 3 27 27 N 1.34784 * 120.76186 * 359.97438 * 26 25 4 28 28 H 0.96996 * 119.19698 * 180.02562 * 27 26 25 29 29 H 1.08996 * 109.46934 * 270.27897 * 1 2 3 30 30 H 1.08995 * 109.47617 * 30.27886 * 1 2 3 31 31 H 1.09004 * 109.47092 * 150.28656 * 1 2 3 32 32 H 1.08002 * 120.41018 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.47033 * 203.95016 * 11 10 8 34 34 H 1.08995 * 109.47168 * 323.94772 * 11 10 8 35 35 H 0.96993 * 120.00181 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.47401 * 214.78079 * 20 10 8 37 37 H 1.09001 * 109.47134 * 334.78012 * 20 10 8 38 38 H 1.09004 * 109.46962 * 299.99729 * 21 20 10 39 39 H 1.09001 * 109.47231 * 59.99998 * 21 20 10 40 40 H 1.09000 * 109.46795 * 304.99972 * 22 21 20 41 41 H 1.09000 * 109.46816 * 60.00444 * 23 22 21 42 42 H 1.08999 * 109.47149 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.47251 * 300.00589 * 23 22 21 44 44 H 1.08997 * 109.47395 * 59.99646 * 24 22 21 45 45 H 1.09004 * 109.47061 * 180.02562 * 24 22 21 46 46 H 1.09000 * 109.46885 * 299.99611 * 24 22 21 47 47 H 1.07993 * 120.40992 * 180.29046 * 25 4 3 48 48 H 1.08002 * 119.61571 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1766 1.1777 0.0000 4 6 3.5884 1.1667 -0.0059 5 7 4.2856 2.3190 -0.0117 6 6 5.6082 2.2938 0.0740 7 8 6.2679 1.8018 -0.8254 8 6 6.2888 2.8672 1.2702 9 8 5.6321 3.3633 2.1626 10 7 7.6331 2.8348 1.3607 11 6 8.4191 2.1326 0.3432 12 6 8.6422 3.0437 -0.8364 13 1 8.2393 4.0456 -0.8286 14 6 9.3617 2.5984 -1.9249 15 7 9.8528 1.3783 -1.9342 16 14 9.6389 3.7278 -3.3867 17 1 10.3730 4.9402 -2.9432 18 1 10.4356 3.0160 -4.4182 19 1 8.3283 4.1251 -3.9610 20 6 8.3084 3.5018 2.4767 21 6 8.5688 2.4893 3.5938 22 6 9.2734 3.1860 4.7595 23 6 8.3374 4.2308 5.3703 24 6 9.6454 2.1506 5.8229 25 6 4.2530 -0.0789 0.0002 26 6 3.5203 -1.2183 0.0058 27 7 2.1732 -1.1717 0.0062 28 1 1.6711 -2.0015 0.0106 29 1 -0.3633 0.0050 1.0276 30 1 -0.3634 0.8874 -0.5181 31 1 -0.3633 -0.8926 -0.5094 32 1 1.6371 2.1133 0.0004 33 1 9.3813 1.8412 0.7644 34 1 7.8803 1.2426 0.0181 35 1 10.3587 1.0649 -2.7002 36 1 9.2565 3.9153 2.1328 37 1 7.6772 4.3059 2.8550 38 1 7.6206 2.0759 3.9377 39 1 9.2000 1.6852 3.2155 40 1 10.1774 3.6756 4.3973 41 1 7.4335 3.7413 5.7325 42 1 8.8396 4.7275 6.2005 43 1 8.0725 4.9684 4.6127 44 1 10.3122 1.4063 5.3878 45 1 10.1470 2.6471 6.6536 46 1 8.7414 1.6611 6.1851 47 1 5.3320 -0.1227 0.0007 48 1 4.0214 -2.1750 0.0109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262704305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:53 Heat of formation + Delta-G solvation = -38.881585 kcal Electronic energy + Delta-G solvation = -29113.876336 eV Core-core repulsion = 25168.881143 eV Total energy + Delta-G solvation = -3944.995193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.08240 -41.29621 -39.38536 -37.89078 -36.71637 -35.78173 -34.46647 -34.10887 -31.86195 -30.82466 -28.97520 -28.75152 -28.02118 -26.43665 -25.05183 -24.51709 -24.11307 -22.18121 -20.92017 -19.94105 -19.73697 -18.72424 -18.27347 -17.90402 -17.42350 -16.89870 -16.42188 -16.29167 -16.15140 -15.96090 -15.84842 -15.35960 -14.97971 -14.61674 -14.55443 -14.33975 -14.11169 -13.84732 -13.69433 -13.55085 -13.52215 -13.17999 -13.12265 -12.95785 -12.83074 -12.80374 -12.70572 -12.60342 -12.29042 -12.21481 -11.98322 -11.79611 -11.61087 -11.55661 -11.45821 -10.86733 -10.50823 -10.39607 -9.80949 -9.57056 -8.56182 -8.16180 -6.23639 -0.12405 0.25521 0.58603 1.31612 1.36952 1.43458 1.91922 1.99357 2.20264 2.40185 2.69011 3.15709 3.29112 3.56573 3.77329 3.89324 3.90218 4.03418 4.04001 4.07400 4.26549 4.34660 4.48810 4.54795 4.59948 4.65236 4.72694 4.79388 4.80175 4.87246 4.90101 5.00633 5.07801 5.09227 5.10391 5.16671 5.24314 5.26652 5.30310 5.45032 5.47640 5.58107 5.60126 5.77819 5.78692 6.11550 6.24949 6.30429 6.60122 6.76805 7.00540 7.40051 7.44431 8.92209 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007471 B = 0.004394 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3746.753724 B = 6370.439651 C = 9061.861703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.194 3.806 3 C -0.232 4.232 4 C 0.295 3.705 5 N -0.685 5.685 6 C 0.477 3.523 7 O -0.488 6.488 8 C 0.487 3.513 9 O -0.562 6.562 10 N -0.575 5.575 11 C 0.258 3.742 12 C -0.519 4.519 13 H 0.032 0.968 14 C 0.022 3.978 15 N -0.920 5.920 16 Si 0.952 3.048 17 H -0.264 1.264 18 H -0.270 1.270 19 H -0.289 1.289 20 C 0.110 3.890 21 C -0.115 4.115 22 C -0.090 4.090 23 C -0.145 4.145 24 C -0.140 4.140 25 C -0.308 4.308 26 C 0.190 3.810 27 N -0.546 5.546 28 H 0.449 0.551 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.151 0.849 33 H 0.021 0.979 34 H 0.035 0.965 35 H 0.265 0.735 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.052 0.948 47 H 0.108 0.892 48 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.665 -11.892 9.990 24.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.079 3.921 3 C -0.258 4.258 4 C 0.146 3.854 5 N -0.429 5.429 6 C 0.259 3.741 7 O -0.361 6.361 8 C 0.270 3.730 9 O -0.443 6.443 10 N -0.306 5.306 11 C 0.138 3.862 12 C -0.557 4.557 13 H 0.051 0.949 14 C -0.177 4.177 15 N -0.560 5.560 16 Si 0.777 3.223 17 H -0.189 1.189 18 H -0.195 1.195 19 H -0.215 1.215 20 C -0.012 4.012 21 C -0.153 4.153 22 C -0.110 4.110 23 C -0.202 4.202 24 C -0.197 4.197 25 C -0.336 4.336 26 C 0.056 3.944 27 N -0.150 5.150 28 H 0.292 0.708 29 H 0.129 0.871 30 H 0.117 0.883 31 H 0.131 0.869 32 H 0.168 0.832 33 H 0.039 0.961 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.126 0.874 48 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -18.508 -11.134 9.802 23.719 hybrid contribution 1.071 0.325 -1.172 1.621 sum -17.437 -10.810 8.629 22.257 Atomic orbital electron populations 1.21249 0.83254 1.06872 1.06150 1.20818 0.96999 0.84232 0.90033 1.20560 0.90352 0.99651 1.15279 1.19374 0.94713 0.87523 0.83796 1.68079 1.06174 1.27001 1.41657 1.21154 0.88299 0.78290 0.86387 1.90962 1.68778 1.38698 1.37709 1.20902 0.83242 0.80775 0.88053 1.90535 1.65411 1.47134 1.41265 1.48402 1.05193 1.51060 1.25977 1.19294 0.89745 0.92519 0.84621 1.21311 1.32986 0.98526 1.02904 0.94943 1.25520 0.95344 0.96576 1.00280 1.69999 1.36898 1.17487 1.31623 0.85723 0.77647 0.79458 0.79433 1.18891 1.19450 1.21508 1.21708 0.97316 0.95855 0.86303 1.21883 1.00232 0.98044 0.95154 1.21062 0.98569 0.96805 0.94516 1.21856 0.99205 0.98384 1.00754 1.21780 1.01359 0.98352 0.98194 1.21672 1.01106 0.93709 1.17102 1.22126 0.82913 1.00466 0.88881 1.40981 1.05613 1.10028 1.58351 0.70807 0.87123 0.88317 0.86929 0.83153 0.96131 0.94732 0.92653 0.90414 0.90762 0.93292 0.92413 0.90499 0.93302 0.90670 0.93749 0.92710 0.90827 0.92890 0.87412 0.76258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.11 10.06 71.24 0.72 0.61 16 2 C 0.19 2.19 6.79 41.47 0.28 2.47 16 3 C -0.23 -5.79 9.62 22.35 0.21 -5.57 16 4 C 0.30 11.18 6.60 40.15 0.27 11.44 16 5 N -0.68 -34.58 10.26 -307.47 -3.15 -37.73 16 6 C 0.48 26.89 6.01 87.50 0.53 27.41 16 7 O -0.49 -29.98 11.66 -5.02 -0.06 -30.04 16 8 C 0.49 27.10 7.66 87.16 0.67 27.77 16 9 O -0.56 -31.50 16.46 -3.41 -0.06 -31.55 16 10 N -0.57 -30.51 2.47 -828.13 -2.05 -32.55 16 11 C 0.26 15.20 4.78 85.64 0.41 15.61 16 12 C -0.52 -32.86 7.79 25.60 0.20 -32.67 16 13 H 0.03 2.13 7.81 -2.91 -0.02 2.11 16 14 C 0.02 1.35 5.46 84.65 0.46 1.81 16 15 N -0.92 -57.87 13.29 21.45 0.28 -57.58 16 16 Si 0.95 49.15 29.54 68.60 2.03 51.18 16 17 H -0.26 -12.94 7.11 99.48 0.71 -12.24 16 18 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.29 -15.36 7.11 99.48 0.71 -14.65 16 20 C 0.11 4.82 5.15 86.38 0.44 5.26 16 21 C -0.11 -4.17 5.01 30.59 0.15 -4.02 16 22 C -0.09 -2.53 2.92 -10.79 -0.03 -2.56 16 23 C -0.14 -3.85 8.95 71.98 0.64 -3.20 16 24 C -0.14 -3.20 9.19 71.98 0.66 -2.54 16 25 C -0.31 -9.92 9.06 22.35 0.20 -9.72 16 26 C 0.19 2.79 11.14 83.60 0.93 3.72 16 27 N -0.55 -3.64 5.18 -184.06 -0.95 -4.59 16 28 H 0.45 -1.99 8.74 -92.71 -0.81 -2.80 16 29 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.10 0.19 8.07 -2.39 -0.02 0.17 16 31 H 0.11 -0.59 8.13 -2.38 -0.02 -0.60 16 32 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 33 H 0.02 1.22 8.03 -2.39 -0.02 1.20 16 34 H 0.03 2.22 5.83 -2.39 -0.01 2.21 16 35 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.08 3.33 8.11 -2.39 -0.02 3.31 16 37 H 0.07 3.25 5.78 -2.39 -0.01 3.24 16 38 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.04 1.30 6.56 -2.39 -0.02 1.28 16 44 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.11 4.45 6.41 -2.91 -0.02 4.43 16 48 H 0.22 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -102.57 397.56 2.95 -99.62 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.16 Total: 7.42 kcal Atomic # 6 Polarization: 29.08 SS G_CDS: 6.75 Total: 35.83 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -5.87 Total: -132.46 kcal Atomic # 8 Polarization: -61.48 SS G_CDS: -0.11 Total: -61.59 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.03 Total: 51.18 kcal Total: -102.57 2.95 -99.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262704305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.740 kcal (2) G-P(sol) polarization free energy of solvation -102.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds