Wall clock time and date at job start Tue Mar 31 2020 17:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38095 * 119.58215 * 2 1 4 4 C 1.38779 * 119.28504 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.75327 * 180.02562 * 4 3 2 6 6 C 1.38415 * 118.48786 * 0.02814 * 4 3 2 7 7 C 1.50700 * 120.44243 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.47451 * 270.02182 * 7 6 4 9 9 O 1.21274 * 119.99754 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00040 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99662 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46600 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.47449 * 64.99829 * 12 11 10 14 14 N 1.46500 * 109.47291 * 304.99664 * 12 11 10 15 15 C 1.36938 * 119.99827 * 154.99950 * 14 12 11 16 16 H 1.07995 * 120.00442 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99923 * 179.97438 * 15 14 12 18 18 N 1.31623 * 120.00054 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00240 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47325 * 59.99824 * 19 17 15 21 21 H 1.48500 * 109.46991 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46610 * 299.99943 * 19 17 15 23 23 C 1.53006 * 109.47015 * 184.99883 * 12 11 10 24 24 C 1.53002 * 117.49796 * 248.74837 * 23 12 11 25 25 C 1.53000 * 117.49795 * 180.08976 * 23 12 11 26 26 C 1.38872 * 119.11543 * 359.97438 * 6 4 3 27 27 O 1.35678 * 119.68979 * 180.02562 * 26 6 4 28 28 N 1.31930 * 119.58129 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47172 * 269.97470 * 1 2 3 30 30 H 1.09004 * 109.46841 * 29.97338 * 1 2 3 31 31 H 1.08998 * 109.47024 * 149.96876 * 1 2 3 32 32 H 1.07998 * 120.35580 * 0.05094 * 3 2 1 33 33 H 1.09002 * 109.47052 * 270.01961 * 5 4 3 34 34 H 1.08991 * 109.47366 * 30.02765 * 5 4 3 35 35 H 1.09002 * 109.46676 * 150.02888 * 5 4 3 36 36 H 1.08997 * 109.47220 * 30.02514 * 7 6 4 37 37 H 1.09004 * 109.47109 * 150.02542 * 7 6 4 38 38 H 0.96997 * 119.99777 * 359.97438 * 10 8 7 39 39 H 1.08997 * 109.47095 * 299.99685 * 11 10 8 40 40 H 1.08993 * 109.47533 * 59.99819 * 11 10 8 41 41 H 0.97004 * 119.99949 * 335.00300 * 14 12 11 42 42 H 0.96999 * 120.00242 * 179.97438 * 18 17 15 43 43 H 1.08994 * 115.54921 * 34.41530 * 23 12 11 44 44 H 1.09002 * 117.50035 * 0.02562 * 24 23 12 45 45 H 1.09001 * 117.49924 * 145.01822 * 24 23 12 46 46 H 1.09002 * 117.49445 * 214.97724 * 25 23 12 47 47 H 1.08998 * 117.50283 * 359.96959 * 25 23 12 48 48 H 0.96701 * 113.99727 * 269.98027 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1937 0.0005 5 6 4.3539 2.4849 0.0011 6 6 4.2305 -0.0262 0.0005 7 6 5.7363 -0.0854 0.0005 8 6 6.2384 -0.1045 -1.4204 9 8 5.4509 -0.0727 -2.3421 10 7 7.5624 -0.1570 -1.6666 11 6 8.0504 -0.1750 -3.0478 12 6 9.5792 -0.2353 -3.0477 13 1 9.9056 -1.1806 -2.6141 14 7 10.1117 0.8754 -2.2545 15 6 11.3502 0.7739 -1.6791 16 1 11.9346 -0.1248 -1.8104 17 6 11.8549 1.8264 -0.9280 18 7 11.1429 2.9219 -0.7683 19 14 13.5447 1.6883 -0.1437 20 1 14.5659 1.4804 -1.2015 21 1 13.8488 2.9372 0.6000 22 1 13.5622 0.5372 0.7945 23 6 10.0939 -0.1285 -4.4846 24 6 10.7448 -1.3709 -5.0960 25 6 11.6084 -0.1715 -4.6975 26 6 3.4803 -1.1949 0.0004 27 8 4.1093 -2.3971 0.0009 28 7 2.1584 -1.1473 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3633 -0.8897 -0.5143 32 1 1.6478 2.1356 0.0008 33 1 4.5414 2.7965 -1.0264 34 1 3.7789 3.2549 0.5153 35 1 5.3038 2.3368 0.5149 36 1 6.1343 0.7893 0.5147 37 1 6.0644 -0.9893 0.5139 38 1 8.1922 -0.1821 -0.9293 39 1 7.6520 -1.0493 -3.5625 40 1 7.7228 0.7291 -3.5607 41 1 9.5869 1.6827 -2.1368 42 1 11.4955 3.6573 -0.2432 43 1 9.5106 0.5114 -5.1465 44 1 10.8060 -2.2644 -4.4747 45 1 10.5900 -1.5480 -6.1603 46 1 12.0214 0.4400 -5.4999 47 1 12.2382 -0.2753 -3.8139 48 1 4.2916 -2.7459 -0.8824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265368695.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:14 Heat of formation + Delta-G solvation = -16.216013 kcal Electronic energy + Delta-G solvation = -28660.555873 eV Core-core repulsion = 24716.543533 eV Total energy + Delta-G solvation = -3944.012340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.92773 -39.25733 -37.58560 -37.30363 -34.96232 -34.56893 -33.42435 -32.02002 -31.16113 -30.25598 -28.14703 -27.74840 -25.91278 -23.74189 -22.88942 -22.28684 -21.73681 -21.02837 -20.18095 -19.47730 -18.38783 -17.50206 -17.31455 -16.69649 -16.10180 -15.60578 -15.27480 -14.98940 -14.91834 -14.44586 -14.29093 -13.94725 -13.77284 -13.58160 -13.30989 -13.18997 -13.06211 -12.96337 -12.88179 -12.43448 -12.27248 -12.01007 -11.78561 -11.61999 -11.51879 -11.40383 -11.19188 -10.92049 -10.89462 -10.76226 -10.20357 -9.98646 -9.82693 -9.58775 -9.48739 -9.41171 -9.32899 -9.03204 -8.68923 -8.67162 -7.10888 -5.87449 -3.17003 0.91682 1.14731 2.87233 3.27237 3.35912 3.41428 3.42483 3.56233 3.78751 4.36539 4.38588 4.50859 4.54704 4.77636 4.79339 5.04935 5.15626 5.18053 5.22485 5.24859 5.37775 5.39163 5.42376 5.46983 5.53000 5.56070 5.59770 5.67115 5.70489 5.75935 5.85292 5.94129 5.97074 6.01373 6.02445 6.13075 6.24375 6.35040 6.48324 6.50492 6.55318 6.72551 6.84998 6.93329 7.42080 7.59345 7.87135 7.88910 8.29499 8.50303 9.41850 9.95422 10.31683 11.34243 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.002806 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.632508 B = 9976.129165 C =11026.140651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.146 3.854 3 C -0.184 4.184 4 C -0.010 4.010 5 C -0.123 4.123 6 C -0.129 4.129 7 C -0.102 4.102 8 C 0.515 3.485 9 O -0.553 6.553 10 N -0.711 5.711 11 C 0.120 3.880 12 C 0.193 3.807 13 H 0.055 0.945 14 N -0.716 5.716 15 C -0.238 4.238 16 H 0.070 0.930 17 C -0.008 4.008 18 N -0.929 5.929 19 Si 0.903 3.097 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 C -0.159 4.159 24 C -0.196 4.196 25 C -0.156 4.156 26 C 0.330 3.670 27 O -0.482 6.482 28 N -0.509 5.509 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.136 0.864 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.411 0.589 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.105 0.895 48 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.394 -4.848 0.245 16.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.009 3.991 3 C -0.204 4.204 4 C -0.017 4.017 5 C -0.179 4.179 6 C -0.133 4.133 7 C -0.142 4.142 8 C 0.301 3.699 9 O -0.431 6.431 10 N -0.362 5.362 11 C -0.005 4.005 12 C 0.082 3.918 13 H 0.073 0.927 14 N -0.357 5.357 15 C -0.369 4.369 16 H 0.088 0.912 17 C -0.205 4.205 18 N -0.577 5.577 19 Si 0.734 3.266 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.181 4.181 24 C -0.234 4.234 25 C -0.193 4.193 26 C 0.151 3.849 27 O -0.289 6.289 28 N -0.229 5.229 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.154 0.846 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.248 0.752 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.123 0.877 48 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -16.210 -5.606 0.280 17.154 hybrid contribution 1.815 0.963 0.161 2.060 sum -14.396 -4.643 0.442 15.132 Atomic orbital electron populations 1.20715 0.88678 1.03497 1.03046 1.20927 0.96603 0.87252 0.94310 1.21768 0.93918 0.99283 1.05416 1.20087 0.93668 0.94988 0.92982 1.20927 1.00116 0.93204 1.03632 1.20120 0.95619 0.92762 1.04805 1.20568 0.91584 1.06193 0.95889 1.20353 0.82556 0.76381 0.90655 1.90676 1.55573 1.50627 1.46253 1.45975 1.06688 1.73567 1.09981 1.21581 0.95101 1.01494 0.82299 1.20056 0.89271 0.93317 0.89110 0.92688 1.42438 1.18950 1.15902 1.58427 1.19106 0.93528 1.00115 1.24163 0.91201 1.24713 0.98370 0.96355 1.01059 1.69643 1.37623 1.05833 1.44605 0.86341 0.84393 0.76725 0.79136 1.21276 1.21761 1.21269 1.23031 0.96499 0.99593 0.98996 1.22963 1.07423 0.92997 1.00025 1.22783 0.94123 0.99589 1.02813 1.18794 0.86557 0.84863 0.94686 1.84686 1.76566 1.33578 1.34115 1.66952 1.09521 1.30705 1.15720 0.90398 0.90568 0.90482 0.84582 0.89835 0.90811 0.90396 0.87250 0.87228 0.75227 0.91744 0.91896 0.78073 0.93417 0.89199 0.89531 0.90097 0.90229 0.87697 0.74072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.17 36.01 0.37 -0.47 16 2 C 0.15 1.76 6.78 -82.60 -0.56 1.20 16 3 C -0.18 -2.07 9.44 -39.43 -0.37 -2.44 16 4 C -0.01 -0.12 5.91 -104.35 -0.62 -0.74 16 5 C -0.12 -1.31 9.67 36.01 0.35 -0.96 16 6 C -0.13 -1.76 4.40 -104.32 -0.46 -2.22 16 7 C -0.10 -1.29 5.25 -29.03 -0.15 -1.44 16 8 C 0.51 7.81 7.82 -10.98 -0.09 7.73 16 9 O -0.55 -10.00 16.03 5.56 0.09 -9.91 16 10 N -0.71 -10.87 5.39 -60.30 -0.32 -11.20 16 11 C 0.12 1.93 5.22 -4.04 -0.02 1.91 16 12 C 0.19 3.41 2.70 -67.93 -0.18 3.23 16 13 H 0.06 0.99 7.84 -51.93 -0.41 0.58 16 14 N -0.72 -15.64 4.54 -53.42 -0.24 -15.88 16 15 C -0.24 -5.85 8.63 -15.06 -0.13 -5.98 16 16 H 0.07 1.69 6.91 -52.49 -0.36 1.32 16 17 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 18 N -0.93 -25.93 13.06 55.49 0.72 -25.20 16 19 Si 0.90 21.01 29.55 -169.99 -5.02 15.99 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.16 -2.68 5.36 -90.62 -0.49 -3.17 16 24 C -0.20 -2.89 10.18 -26.69 -0.27 -3.16 16 25 C -0.16 -2.69 9.78 -26.69 -0.26 -2.95 16 26 C 0.33 4.74 7.72 -17.12 -0.13 4.60 16 27 O -0.48 -6.24 12.62 -18.74 -0.24 -6.48 16 28 N -0.51 -7.35 10.30 -9.54 -0.10 -7.45 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.08 0.82 6.08 -51.93 -0.32 0.51 16 36 H 0.11 1.26 6.07 -51.93 -0.32 0.95 16 37 H 0.11 1.26 7.55 -51.93 -0.39 0.87 16 38 H 0.41 6.36 8.14 -40.82 -0.33 6.03 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.39 9.22 7.80 -40.82 -0.32 8.91 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 44 H 0.09 1.22 8.05 -51.93 -0.42 0.81 16 45 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 47 H 0.10 2.03 6.23 -51.93 -0.32 1.71 16 48 H 0.40 3.91 9.06 45.56 0.41 4.33 16 LS Contribution 398.73 15.07 6.01 6.01 Total: -1.00 -31.13 398.73 -8.77 -39.89 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -6.55 Total: 19.43 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -3.11 Total: -5.19 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.06 Total: -59.73 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.15 Total: -16.39 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.13 -8.77 -39.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265368695.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.676 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds