Wall clock time and date at job start Tue Mar 31 2020 17:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38095 * 119.58215 * 2 1 4 4 C 1.38779 * 119.28504 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.75327 * 180.02562 * 4 3 2 6 6 C 1.38415 * 118.48786 * 0.02814 * 4 3 2 7 7 C 1.50700 * 120.44243 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.47451 * 270.02182 * 7 6 4 9 9 O 1.21274 * 119.99754 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00040 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99662 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46600 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.47449 * 64.99829 * 12 11 10 14 14 N 1.46500 * 109.47291 * 304.99664 * 12 11 10 15 15 C 1.36938 * 119.99827 * 154.99950 * 14 12 11 16 16 H 1.07995 * 120.00442 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99923 * 179.97438 * 15 14 12 18 18 N 1.31623 * 120.00054 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00240 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47325 * 59.99824 * 19 17 15 21 21 H 1.48500 * 109.46991 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46610 * 299.99943 * 19 17 15 23 23 C 1.53006 * 109.47015 * 184.99883 * 12 11 10 24 24 C 1.53002 * 117.49796 * 248.74837 * 23 12 11 25 25 C 1.53000 * 117.49795 * 180.08976 * 23 12 11 26 26 C 1.38872 * 119.11543 * 359.97438 * 6 4 3 27 27 O 1.35678 * 119.68979 * 180.02562 * 26 6 4 28 28 N 1.31930 * 119.58129 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47172 * 269.97470 * 1 2 3 30 30 H 1.09004 * 109.46841 * 29.97338 * 1 2 3 31 31 H 1.08998 * 109.47024 * 149.96876 * 1 2 3 32 32 H 1.07998 * 120.35580 * 0.05094 * 3 2 1 33 33 H 1.09002 * 109.47052 * 270.01961 * 5 4 3 34 34 H 1.08991 * 109.47366 * 30.02765 * 5 4 3 35 35 H 1.09002 * 109.46676 * 150.02888 * 5 4 3 36 36 H 1.08997 * 109.47220 * 30.02514 * 7 6 4 37 37 H 1.09004 * 109.47109 * 150.02542 * 7 6 4 38 38 H 0.96997 * 119.99777 * 359.97438 * 10 8 7 39 39 H 1.08997 * 109.47095 * 299.99685 * 11 10 8 40 40 H 1.08993 * 109.47533 * 59.99819 * 11 10 8 41 41 H 0.97004 * 119.99949 * 335.00300 * 14 12 11 42 42 H 0.96999 * 120.00242 * 179.97438 * 18 17 15 43 43 H 1.08994 * 115.54921 * 34.41530 * 23 12 11 44 44 H 1.09002 * 117.50035 * 0.02562 * 24 23 12 45 45 H 1.09001 * 117.49924 * 145.01822 * 24 23 12 46 46 H 1.09002 * 117.49445 * 214.97724 * 25 23 12 47 47 H 1.08998 * 117.50283 * 359.96959 * 25 23 12 48 48 H 0.96701 * 113.99727 * 269.98027 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1937 0.0005 5 6 4.3539 2.4849 0.0011 6 6 4.2305 -0.0262 0.0005 7 6 5.7363 -0.0854 0.0005 8 6 6.2384 -0.1045 -1.4204 9 8 5.4509 -0.0727 -2.3421 10 7 7.5624 -0.1570 -1.6666 11 6 8.0504 -0.1750 -3.0478 12 6 9.5792 -0.2353 -3.0477 13 1 9.9056 -1.1806 -2.6141 14 7 10.1117 0.8754 -2.2545 15 6 11.3502 0.7739 -1.6791 16 1 11.9346 -0.1248 -1.8104 17 6 11.8549 1.8264 -0.9280 18 7 11.1429 2.9219 -0.7683 19 14 13.5447 1.6883 -0.1437 20 1 14.5659 1.4804 -1.2015 21 1 13.8488 2.9372 0.6000 22 1 13.5622 0.5372 0.7945 23 6 10.0939 -0.1285 -4.4846 24 6 10.7448 -1.3709 -5.0960 25 6 11.6084 -0.1715 -4.6975 26 6 3.4803 -1.1949 0.0004 27 8 4.1093 -2.3971 0.0009 28 7 2.1584 -1.1473 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3633 -0.8897 -0.5143 32 1 1.6478 2.1356 0.0008 33 1 4.5414 2.7965 -1.0264 34 1 3.7789 3.2549 0.5153 35 1 5.3038 2.3368 0.5149 36 1 6.1343 0.7893 0.5147 37 1 6.0644 -0.9893 0.5139 38 1 8.1922 -0.1821 -0.9293 39 1 7.6520 -1.0493 -3.5625 40 1 7.7228 0.7291 -3.5607 41 1 9.5869 1.6827 -2.1368 42 1 11.4955 3.6573 -0.2432 43 1 9.5106 0.5114 -5.1465 44 1 10.8060 -2.2644 -4.4747 45 1 10.5900 -1.5480 -6.1603 46 1 12.0214 0.4400 -5.4999 47 1 12.2382 -0.2753 -3.8139 48 1 4.2916 -2.7459 -0.8824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265368695.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:13 Heat of formation + Delta-G solvation = -39.122173 kcal Electronic energy + Delta-G solvation = -28661.549159 eV Core-core repulsion = 24716.543533 eV Total energy + Delta-G solvation = -3945.005626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.90274 -40.49689 -38.98655 -38.25436 -36.13926 -35.73095 -35.11176 -33.00648 -32.68126 -31.33912 -29.59161 -28.64337 -26.93000 -25.45933 -24.06861 -23.47747 -23.01908 -22.02680 -21.46013 -20.81923 -19.36459 -19.23421 -18.30175 -17.96638 -17.28887 -16.83510 -16.62030 -16.24456 -16.07086 -15.93703 -15.39524 -15.20862 -15.06616 -14.85627 -14.47179 -14.37100 -14.14097 -13.89669 -13.83524 -13.65260 -13.17888 -12.97375 -12.92487 -12.82999 -12.72957 -12.66562 -12.49058 -12.44507 -12.41322 -12.24072 -12.01539 -11.71494 -11.12117 -10.98617 -10.85046 -10.75881 -10.44297 -10.37134 -9.99534 -9.61299 -8.97407 -7.86859 -5.13789 -0.01949 0.20244 1.51376 1.52483 1.57327 1.65249 2.23492 2.49545 2.59658 2.83803 3.08566 3.46605 3.49969 3.67974 3.80618 3.83066 3.89572 3.96918 4.01802 4.18797 4.25662 4.35697 4.39160 4.40805 4.47246 4.57185 4.57791 4.67024 4.68616 4.72657 4.80625 4.82175 4.89002 4.90618 5.01292 5.11616 5.16618 5.17862 5.23441 5.34112 5.40717 5.48158 5.55171 5.63595 5.64753 6.33017 6.51217 6.61727 6.95217 7.26065 7.41845 8.12505 8.38310 9.35510 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.002806 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.632508 B = 9976.129165 C =11026.140651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.135 3.865 3 C -0.183 4.183 4 C -0.021 4.021 5 C -0.120 4.120 6 C -0.147 4.147 7 C -0.093 4.093 8 C 0.519 3.481 9 O -0.581 6.581 10 N -0.709 5.709 11 C 0.130 3.870 12 C 0.198 3.802 13 H 0.058 0.942 14 N -0.722 5.722 15 C -0.218 4.218 16 H 0.075 0.925 17 C -0.067 4.067 18 N -0.964 5.964 19 Si 0.957 3.043 20 H -0.285 1.285 21 H -0.303 1.303 22 H -0.279 1.279 23 C -0.173 4.173 24 C -0.163 4.163 25 C -0.175 4.175 26 C 0.311 3.689 27 O -0.489 6.489 28 N -0.536 5.536 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.168 0.832 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.411 0.589 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.374 0.626 42 H 0.247 0.753 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.198 -5.483 -0.051 17.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.002 4.002 3 C -0.202 4.202 4 C -0.029 4.029 5 C -0.176 4.176 6 C -0.151 4.151 7 C -0.133 4.133 8 C 0.306 3.694 9 O -0.462 6.462 10 N -0.360 5.360 11 C 0.005 3.995 12 C 0.089 3.911 13 H 0.075 0.925 14 N -0.361 5.361 15 C -0.350 4.350 16 H 0.093 0.907 17 C -0.260 4.260 18 N -0.615 5.615 19 Si 0.787 3.213 20 H -0.212 1.212 21 H -0.230 1.230 22 H -0.205 1.205 23 C -0.194 4.194 24 C -0.200 4.200 25 C -0.212 4.212 26 C 0.132 3.868 27 O -0.298 6.298 28 N -0.257 5.257 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.186 0.814 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.248 0.752 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.206 0.794 42 H 0.056 0.944 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.123 0.877 46 H 0.103 0.897 47 H 0.099 0.901 48 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -17.005 -6.298 -0.041 18.134 hybrid contribution 1.990 1.093 0.176 2.277 sum -15.015 -5.206 0.135 15.892 Atomic orbital electron populations 1.20822 0.86096 1.04483 1.04227 1.21622 0.98391 0.86977 0.93243 1.22143 0.93596 1.00403 1.04091 1.20418 0.94598 0.95183 0.92697 1.20942 1.00322 0.93159 1.03191 1.20244 0.95836 0.93174 1.05818 1.20521 0.91434 1.07197 0.94143 1.20715 0.82003 0.75259 0.91393 1.90658 1.56161 1.51983 1.47418 1.45960 1.06890 1.73501 1.09648 1.21432 0.93851 1.01398 0.82813 1.20142 0.90102 0.91751 0.89149 0.92452 1.42528 1.18112 1.16493 1.58979 1.19382 0.93978 0.99513 1.22096 0.90697 1.25311 1.01199 0.96642 1.02854 1.69779 1.38947 1.06498 1.46296 0.85466 0.81355 0.76141 0.78290 1.21172 1.22991 1.20527 1.22939 0.96204 1.01808 0.98451 1.23031 1.03589 0.91950 1.01463 1.22734 0.93936 1.02115 1.02424 1.19024 0.86950 0.85320 0.95467 1.84644 1.76560 1.33472 1.35122 1.67004 1.09712 1.32139 1.16837 0.88973 0.88128 0.90943 0.81420 0.90936 0.88322 0.90609 0.86176 0.86135 0.75213 0.90420 0.93233 0.79422 0.94379 0.88944 0.88556 0.87652 0.89709 0.90074 0.72965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.17 71.24 0.72 -0.70 16 2 C 0.13 3.07 6.78 42.51 0.29 3.36 16 3 C -0.18 -3.78 9.44 22.37 0.21 -3.57 16 4 C -0.02 -0.51 5.91 -19.69 -0.12 -0.63 16 5 C -0.12 -2.43 9.67 71.24 0.69 -1.74 16 6 C -0.15 -3.95 4.40 -19.67 -0.09 -4.03 16 7 C -0.09 -2.32 5.25 29.10 0.15 -2.17 16 8 C 0.52 15.60 7.82 87.66 0.69 16.29 16 9 O -0.58 -21.00 16.03 -3.01 -0.05 -21.04 16 10 N -0.71 -21.39 5.39 -463.08 -2.50 -23.88 16 11 C 0.13 4.08 5.22 86.38 0.45 4.53 16 12 C 0.20 6.79 2.70 44.99 0.12 6.91 16 13 H 0.06 1.97 7.84 -2.38 -0.02 1.95 16 14 N -0.72 -31.42 4.54 -322.93 -1.47 -32.89 16 15 C -0.22 -10.64 8.63 84.03 0.73 -9.91 16 16 H 0.08 3.55 6.91 -2.91 -0.02 3.53 16 17 C -0.07 -3.55 5.50 84.86 0.47 -3.09 16 18 N -0.96 -54.69 13.06 21.65 0.28 -54.40 16 19 Si 0.96 43.46 29.55 68.60 2.03 45.48 16 20 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 C -0.17 -5.55 5.36 -10.79 -0.06 -5.61 16 24 C -0.16 -4.32 10.18 30.62 0.31 -4.01 16 25 C -0.17 -5.80 9.78 30.62 0.30 -5.50 16 26 C 0.31 8.92 7.72 84.78 0.65 9.57 16 27 O -0.49 -12.74 12.62 -89.96 -1.14 -13.87 16 28 N -0.54 -15.33 10.30 -296.96 -3.06 -18.39 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 0.94 8.08 -2.38 -0.02 0.92 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 32 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.10 1.46 8.10 -2.39 -0.02 1.44 16 35 H 0.08 1.54 6.08 -2.39 -0.01 1.53 16 36 H 0.12 2.71 6.07 -2.39 -0.01 2.70 16 37 H 0.12 2.70 7.55 -2.38 -0.02 2.69 16 38 H 0.41 12.56 8.14 -92.71 -0.75 11.80 16 39 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.37 18.08 7.80 -92.71 -0.72 17.36 16 42 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 43 H 0.09 2.94 8.11 -2.39 -0.02 2.92 16 44 H 0.10 2.40 8.05 -2.39 -0.02 2.38 16 45 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 47 H 0.08 3.09 6.23 -2.39 -0.01 3.07 16 48 H 0.41 8.16 9.06 -74.06 -0.67 7.48 16 Total: -1.00 -67.00 398.73 -1.51 -68.51 By element: Atomic # 1 Polarization: 51.93 SS G_CDS: -1.14 Total: 50.80 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 5.52 Total: -0.30 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -6.74 Total: -129.57 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.18 Total: -34.92 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -67.00 -1.51 -68.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265368695.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.386 kcal (2) G-P(sol) polarization free energy of solvation -67.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds