Wall clock time and date at job start Tue Mar 31 2020 17:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35925 * 116.99616 * 2 1 4 4 C 1.38847 * 120.40716 * 0.02562 * 3 2 1 5 5 N 1.31886 * 121.00109 * 179.97438 * 4 3 2 6 6 C 1.31678 * 121.93965 * 359.97438 * 5 4 3 7 7 C 1.39528 * 120.69171 * 0.02562 * 6 5 4 8 8 C 1.47859 * 120.52919 * 179.97438 * 7 6 5 9 9 O 1.21551 * 119.99697 * 130.62156 * 8 7 6 10 10 N 1.34768 * 119.99821 * 310.61348 * 8 7 6 11 11 C 1.46928 * 120.63166 * 354.23456 * 10 8 7 12 12 C 1.53197 * 108.89420 * 233.51095 * 11 10 8 13 13 C 1.53079 * 109.29433 * 305.57962 * 12 11 10 14 14 C 1.53039 * 109.65649 * 61.15070 * 13 12 11 15 15 C 1.46931 * 120.63271 * 174.20637 * 10 8 7 16 16 H 1.08995 * 109.58811 * 246.20653 * 15 10 8 17 17 C 1.53005 * 109.58224 * 6.63290 * 15 10 8 18 18 N 1.46504 * 109.46811 * 292.87346 * 17 15 10 19 19 C 1.36937 * 119.99889 * 185.71357 * 18 17 15 20 20 H 1.07997 * 119.99573 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00214 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99614 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00067 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46985 * 89.99741 * 23 21 19 25 25 H 1.48503 * 109.46808 * 209.99729 * 23 21 19 26 26 H 1.48497 * 109.47093 * 329.99540 * 23 21 19 27 27 C 1.38844 * 120.40375 * 180.26019 * 3 2 1 28 28 C 1.50698 * 120.87942 * 0.02562 * 27 3 2 29 29 H 1.08994 * 109.47254 * 299.99486 * 1 2 3 30 30 H 1.08997 * 109.47198 * 59.99745 * 1 2 3 31 31 H 1.08998 * 109.46511 * 179.97438 * 1 2 3 32 32 H 1.07999 * 119.50004 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.65445 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.58829 * 353.36615 * 11 10 8 35 35 H 1.09006 * 109.58817 * 113.65421 * 11 10 8 36 36 H 1.09007 * 109.49499 * 65.38535 * 12 11 10 37 37 H 1.08998 * 109.49951 * 185.48134 * 12 11 10 38 38 H 1.08999 * 109.34379 * 301.12407 * 13 12 11 39 39 H 1.08996 * 109.43995 * 181.22944 * 13 12 11 40 40 H 1.09002 * 109.49415 * 178.74563 * 14 13 12 41 41 H 1.09000 * 109.52758 * 58.67114 * 14 13 12 42 42 H 1.08997 * 109.46944 * 52.86956 * 17 15 10 43 43 H 1.08995 * 109.46780 * 172.87422 * 17 15 10 44 44 H 0.96996 * 119.99909 * 5.71079 * 18 17 15 45 45 H 0.97001 * 119.99740 * 180.02562 * 22 21 19 46 46 H 1.09001 * 109.47335 * 274.63981 * 28 27 3 47 47 H 1.08997 * 109.47324 * 34.64331 * 28 27 3 48 48 H 1.08999 * 109.47258 * 154.64157 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8845 3.5622 0.0010 6 6 3.1952 3.6893 0.0016 7 6 4.0198 2.5637 0.0011 8 6 5.4911 2.7106 0.0011 9 8 6.1639 2.0886 0.7998 10 7 6.0861 3.5339 -0.8846 11 6 5.3015 4.1947 -1.9365 12 6 5.9434 3.8969 -3.2952 13 6 7.4187 4.3039 -3.2578 14 6 8.1496 3.4918 -2.1862 15 6 7.5316 3.7883 -0.8162 16 1 7.7070 4.8316 -0.5542 17 6 8.1631 2.8781 0.2392 18 7 7.6841 3.2662 1.5682 19 6 8.2037 2.6676 2.6849 20 1 8.9662 1.9093 2.5858 21 6 7.7496 3.0349 3.9442 22 7 6.8199 3.9588 4.0649 23 14 8.4578 2.2179 5.4674 24 1 9.6357 2.9888 5.9402 25 1 7.4269 2.1844 6.5358 26 1 8.8738 0.8311 5.1373 27 6 3.4320 1.2937 -0.0054 28 6 4.2810 0.0486 -0.0120 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 0.2197 2.3226 0.0005 33 1 3.6365 4.6750 0.0024 34 1 4.2801 3.8146 -1.9239 35 1 5.2930 5.2711 -1.7645 36 1 5.8675 2.8304 -3.5075 37 1 5.4278 4.4607 -4.0726 38 1 7.4945 5.3657 -3.0235 39 1 7.8724 4.1132 -4.2303 40 1 9.2041 3.7676 -2.1770 41 1 8.0537 2.4285 -2.4062 42 1 7.8843 1.8434 0.0404 43 1 9.2480 2.9760 0.2010 44 1 6.9991 3.9470 1.6572 45 1 6.5028 4.2157 4.9449 46 1 4.4212 -0.3011 1.0108 47 1 3.7848 -0.7264 -0.5961 48 1 5.2511 0.2726 -0.4555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265674132.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:32 Heat of formation + Delta-G solvation = 19.842013 kcal Electronic energy + Delta-G solvation = -30638.581487 eV Core-core repulsion = 26696.132740 eV Total energy + Delta-G solvation = -3942.448747 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.98262 -39.83429 -38.03235 -36.87886 -34.59850 -33.44654 -32.71648 -31.97691 -30.27269 -29.79408 -27.84074 -27.60846 -26.13454 -24.47842 -23.59254 -22.81391 -22.23142 -21.21632 -20.52657 -19.15065 -17.81520 -17.36071 -16.78188 -16.27946 -16.04874 -15.88519 -15.45912 -14.87585 -14.50611 -14.40178 -14.28813 -13.99609 -13.62739 -13.50204 -13.41883 -12.96885 -12.90413 -12.70347 -12.64454 -12.49275 -12.19241 -12.07727 -11.98627 -11.66344 -11.57333 -11.53501 -11.00856 -10.90892 -10.72634 -10.69694 -10.54292 -10.31409 -9.88535 -9.63293 -9.49720 -9.20893 -8.71234 -8.42007 -8.28512 -8.05764 -6.48883 -5.56015 -2.74375 0.94231 1.32223 2.96991 3.32346 3.46459 3.55596 3.59652 3.61704 3.89049 4.44504 4.59079 4.73615 4.77116 4.80820 4.85918 4.91393 4.94413 4.94941 5.04345 5.18455 5.25235 5.26496 5.43513 5.48684 5.54568 5.64374 5.65818 5.80116 5.83759 5.86224 5.90581 5.91819 5.98500 6.03753 6.10649 6.15010 6.27045 6.35798 6.37166 6.53461 6.54150 6.67607 6.94460 7.13159 7.27003 7.87185 7.91873 7.97279 8.61838 8.90250 9.73242 10.32226 10.66158 11.67629 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008698 B = 0.005301 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.259083 B = 5280.477413 C = 7475.719055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.067 3.933 4 C 0.023 3.977 5 N -0.457 5.457 6 C 0.095 3.905 7 C -0.118 4.118 8 C 0.511 3.489 9 O -0.420 6.420 10 N -0.610 5.610 11 C 0.108 3.892 12 C -0.133 4.133 13 C -0.117 4.117 14 C -0.127 4.127 15 C 0.144 3.856 16 H 0.070 0.930 17 C 0.160 3.840 18 N -0.690 5.690 19 C -0.209 4.209 20 H 0.066 0.934 21 C -0.019 4.019 22 N -0.935 5.935 23 Si 0.901 3.099 24 H -0.293 1.293 25 H -0.294 1.294 26 H -0.284 1.284 27 C -0.031 4.031 28 C -0.104 4.104 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.039 0.961 43 H 0.018 0.982 44 H 0.380 0.620 45 H 0.250 0.750 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.163 -2.704 -17.724 20.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.020 3.980 4 C -0.134 4.134 5 N -0.166 5.166 6 C -0.064 4.064 7 C -0.124 4.124 8 C 0.295 3.705 9 O -0.287 6.287 10 N -0.349 5.349 11 C -0.016 4.016 12 C -0.171 4.171 13 C -0.155 4.155 14 C -0.166 4.166 15 C 0.041 3.959 16 H 0.088 0.912 17 C 0.032 3.968 18 N -0.334 5.334 19 C -0.341 4.341 20 H 0.084 0.916 21 C -0.214 4.214 22 N -0.586 5.586 23 Si 0.734 3.266 24 H -0.221 1.221 25 H -0.221 1.221 26 H -0.210 1.210 27 C -0.040 4.040 28 C -0.160 4.160 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.173 0.827 33 H 0.178 0.822 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.036 0.964 44 H 0.214 0.786 45 H 0.060 0.940 46 H 0.101 0.899 47 H 0.086 0.914 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.114 -2.682 -17.113 20.059 hybrid contribution 0.095 -0.636 1.017 1.204 sum -10.019 -3.318 -16.096 19.248 Atomic orbital electron populations 1.23091 0.78359 1.04140 1.01449 1.86085 1.21236 1.25893 1.88804 1.19707 0.92293 0.85798 1.00201 1.22890 1.00290 0.87228 1.03017 1.67489 1.12092 1.25882 1.11177 1.22862 0.88298 0.98463 0.96747 1.20986 0.96147 0.93218 1.02000 1.17878 0.85924 0.84185 0.82524 1.91257 1.61664 1.40695 1.35038 1.47677 1.08000 1.47931 1.31257 1.21724 0.95364 0.97507 0.87013 1.21913 0.96428 1.01881 0.96910 1.21498 0.95097 1.00123 0.98753 1.21905 0.99567 1.00687 0.94419 1.21503 0.78918 1.00199 0.95307 0.91196 1.20903 0.94315 0.96469 0.85069 1.42335 1.45954 1.45537 0.99529 1.19152 1.14912 1.15099 0.84985 0.91633 1.24615 0.99657 0.99990 0.97167 1.69655 1.32598 1.34272 1.22036 0.86247 0.77802 0.78864 0.83719 1.22128 1.22111 1.21034 1.19693 0.90636 0.95739 0.97886 1.20647 0.98577 0.93176 1.03608 0.92439 0.92584 0.88063 0.82660 0.82168 0.90216 0.91711 0.91741 0.91211 0.91837 0.92070 0.90874 0.91560 0.94358 0.96447 0.78607 0.93990 0.89852 0.91387 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.82 101.05 0.99 1.18 16 2 O -0.31 -3.86 9.75 -19.50 -0.19 -4.05 16 3 C 0.07 0.97 6.68 -39.13 -0.26 0.71 16 4 C 0.02 0.31 10.21 -17.30 -0.18 0.14 16 5 N -0.46 -7.05 10.34 -12.79 -0.13 -7.18 16 6 C 0.10 1.52 8.77 -17.14 -0.15 1.37 16 7 C -0.12 -2.04 4.79 -104.84 -0.50 -2.55 16 8 C 0.51 9.78 5.63 -12.33 -0.07 9.71 16 9 O -0.42 -9.91 9.41 5.32 0.05 -9.86 16 10 N -0.61 -9.73 2.97 -166.31 -0.49 -10.22 16 11 C 0.11 1.30 5.32 -3.71 -0.02 1.28 16 12 C -0.13 -1.34 6.09 -26.59 -0.16 -1.50 16 13 C -0.12 -1.19 5.88 -26.67 -0.16 -1.34 16 14 C -0.13 -1.59 5.37 -26.61 -0.14 -1.73 16 15 C 0.14 2.36 2.95 -67.59 -0.20 2.16 16 16 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 17 C 0.16 3.37 4.87 -4.04 -0.02 3.35 16 18 N -0.69 -18.20 3.15 -59.91 -0.19 -18.39 16 19 C -0.21 -6.16 9.68 -15.06 -0.15 -6.30 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.02 -0.59 5.50 -17.43 -0.10 -0.69 16 22 N -0.94 -29.71 13.06 55.49 0.72 -28.99 16 23 Si 0.90 23.77 29.55 -169.99 -5.02 18.75 16 24 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 25 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 26 H -0.28 -7.35 7.11 56.52 0.40 -6.94 16 27 C -0.03 -0.50 5.96 -103.76 -0.62 -1.12 16 28 C -0.10 -1.63 9.01 36.00 0.32 -1.31 16 29 H 0.06 0.41 7.67 -51.93 -0.40 0.02 16 30 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.16 1.58 6.30 -52.49 -0.33 1.25 16 33 H 0.16 2.39 7.42 -52.48 -0.39 2.00 16 34 H 0.08 0.96 5.19 -51.93 -0.27 0.69 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.87 6.49 -51.93 -0.34 0.53 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.38 10.69 6.83 -40.82 -0.28 10.41 16 45 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 46 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 47 H 0.07 0.91 7.76 -51.93 -0.40 0.51 16 48 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -35.28 373.75 -8.37 -43.66 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -7.35 Total: 7.29 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -1.40 Total: 3.37 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: -0.09 Total: -64.77 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.14 Total: -13.92 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -5.02 Total: 18.75 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.28 -8.37 -43.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265674132.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.498 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds