Wall clock time and date at job start Tue Mar 31 2020 17:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35925 * 116.99616 * 2 1 4 4 C 1.38847 * 120.40716 * 0.02562 * 3 2 1 5 5 N 1.31886 * 121.00109 * 179.97438 * 4 3 2 6 6 C 1.31678 * 121.93965 * 359.97438 * 5 4 3 7 7 C 1.39528 * 120.69171 * 0.02562 * 6 5 4 8 8 C 1.47859 * 120.52919 * 179.97438 * 7 6 5 9 9 O 1.21551 * 119.99697 * 130.62156 * 8 7 6 10 10 N 1.34768 * 119.99821 * 310.61348 * 8 7 6 11 11 C 1.46928 * 120.63166 * 354.23456 * 10 8 7 12 12 C 1.53197 * 108.89420 * 233.51095 * 11 10 8 13 13 C 1.53079 * 109.29433 * 305.57962 * 12 11 10 14 14 C 1.53039 * 109.65649 * 61.15070 * 13 12 11 15 15 C 1.46931 * 120.63271 * 174.20637 * 10 8 7 16 16 H 1.08995 * 109.58811 * 246.20653 * 15 10 8 17 17 C 1.53005 * 109.58224 * 6.63290 * 15 10 8 18 18 N 1.46504 * 109.46811 * 292.87346 * 17 15 10 19 19 C 1.36937 * 119.99889 * 185.71357 * 18 17 15 20 20 H 1.07997 * 119.99573 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00214 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99614 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00067 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46985 * 89.99741 * 23 21 19 25 25 H 1.48503 * 109.46808 * 209.99729 * 23 21 19 26 26 H 1.48497 * 109.47093 * 329.99540 * 23 21 19 27 27 C 1.38844 * 120.40375 * 180.26019 * 3 2 1 28 28 C 1.50698 * 120.87942 * 0.02562 * 27 3 2 29 29 H 1.08994 * 109.47254 * 299.99486 * 1 2 3 30 30 H 1.08997 * 109.47198 * 59.99745 * 1 2 3 31 31 H 1.08998 * 109.46511 * 179.97438 * 1 2 3 32 32 H 1.07999 * 119.50004 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.65445 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.58829 * 353.36615 * 11 10 8 35 35 H 1.09006 * 109.58817 * 113.65421 * 11 10 8 36 36 H 1.09007 * 109.49499 * 65.38535 * 12 11 10 37 37 H 1.08998 * 109.49951 * 185.48134 * 12 11 10 38 38 H 1.08999 * 109.34379 * 301.12407 * 13 12 11 39 39 H 1.08996 * 109.43995 * 181.22944 * 13 12 11 40 40 H 1.09002 * 109.49415 * 178.74563 * 14 13 12 41 41 H 1.09000 * 109.52758 * 58.67114 * 14 13 12 42 42 H 1.08997 * 109.46944 * 52.86956 * 17 15 10 43 43 H 1.08995 * 109.46780 * 172.87422 * 17 15 10 44 44 H 0.96996 * 119.99909 * 5.71079 * 18 17 15 45 45 H 0.97001 * 119.99740 * 180.02562 * 22 21 19 46 46 H 1.09001 * 109.47335 * 274.63981 * 28 27 3 47 47 H 1.08997 * 109.47324 * 34.64331 * 28 27 3 48 48 H 1.08999 * 109.47258 * 154.64157 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8845 3.5622 0.0010 6 6 3.1952 3.6893 0.0016 7 6 4.0198 2.5637 0.0011 8 6 5.4911 2.7106 0.0011 9 8 6.1639 2.0886 0.7998 10 7 6.0861 3.5339 -0.8846 11 6 5.3015 4.1947 -1.9365 12 6 5.9434 3.8969 -3.2952 13 6 7.4187 4.3039 -3.2578 14 6 8.1496 3.4918 -2.1862 15 6 7.5316 3.7883 -0.8162 16 1 7.7070 4.8316 -0.5542 17 6 8.1631 2.8781 0.2392 18 7 7.6841 3.2662 1.5682 19 6 8.2037 2.6676 2.6849 20 1 8.9662 1.9093 2.5858 21 6 7.7496 3.0349 3.9442 22 7 6.8199 3.9588 4.0649 23 14 8.4578 2.2179 5.4674 24 1 9.6357 2.9888 5.9402 25 1 7.4269 2.1844 6.5358 26 1 8.8738 0.8311 5.1373 27 6 3.4320 1.2937 -0.0054 28 6 4.2810 0.0486 -0.0120 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 0.2197 2.3226 0.0005 33 1 3.6365 4.6750 0.0024 34 1 4.2801 3.8146 -1.9239 35 1 5.2930 5.2711 -1.7645 36 1 5.8675 2.8304 -3.5075 37 1 5.4278 4.4607 -4.0726 38 1 7.4945 5.3657 -3.0235 39 1 7.8724 4.1132 -4.2303 40 1 9.2041 3.7676 -2.1770 41 1 8.0537 2.4285 -2.4062 42 1 7.8843 1.8434 0.0404 43 1 9.2480 2.9760 0.2010 44 1 6.9991 3.9470 1.6572 45 1 6.5028 4.2157 4.9449 46 1 4.4212 -0.3011 1.0108 47 1 3.7848 -0.7264 -0.5961 48 1 5.2511 0.2726 -0.4555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265674132.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:31 Heat of formation + Delta-G solvation = -4.191747 kcal Electronic energy + Delta-G solvation = -30639.623669 eV Core-core repulsion = 26696.132740 eV Total energy + Delta-G solvation = -3943.490929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.21439 -41.07751 -39.08246 -38.16808 -36.39099 -34.78400 -33.98886 -33.59838 -31.66669 -31.29890 -28.96614 -28.48615 -27.65983 -25.99667 -24.77227 -24.35533 -23.57163 -22.60806 -21.62231 -20.37470 -19.34066 -18.59164 -18.41178 -17.46802 -17.15819 -16.99795 -16.74381 -16.61600 -15.94787 -15.50400 -15.44422 -15.19464 -15.09606 -15.03304 -14.67503 -14.48545 -14.11196 -14.00877 -13.88358 -13.80635 -13.62795 -13.38427 -13.10816 -12.89808 -12.80794 -12.74487 -12.68594 -12.35630 -12.15860 -12.06840 -11.85874 -11.70513 -11.47743 -11.36508 -10.95038 -10.77433 -10.48594 -9.85804 -9.49197 -9.45247 -8.58262 -7.84217 -5.01819 -0.27525 0.11109 1.42344 1.45167 1.53012 1.85397 1.99284 2.33333 2.60741 2.64501 3.36063 3.45440 3.50026 3.57009 3.68091 3.83210 3.86122 3.96547 4.10631 4.13756 4.23713 4.35598 4.38012 4.40583 4.41127 4.47403 4.51430 4.61234 4.61539 4.68828 4.75766 4.76065 4.89995 4.99755 5.00780 5.06741 5.10532 5.14453 5.16683 5.26001 5.33333 5.36452 5.51553 5.54765 5.83650 6.16335 6.36744 6.57747 6.76466 7.42352 7.47684 8.23149 8.45497 9.40453 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008698 B = 0.005301 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.259083 B = 5280.477413 C = 7475.719055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.075 3.925 4 C 0.032 3.968 5 N -0.463 5.463 6 C 0.091 3.909 7 C -0.138 4.138 8 C 0.518 3.482 9 O -0.481 6.481 10 N -0.605 5.605 11 C 0.101 3.899 12 C -0.126 4.126 13 C -0.111 4.111 14 C -0.119 4.119 15 C 0.147 3.853 16 H 0.067 0.933 17 C 0.163 3.837 18 N -0.701 5.701 19 C -0.209 4.209 20 H 0.063 0.937 21 C -0.083 4.083 22 N -0.973 5.973 23 Si 0.964 3.036 24 H -0.285 1.285 25 H -0.300 1.300 26 H -0.277 1.277 27 C -0.053 4.053 28 C -0.093 4.093 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.195 0.805 33 H 0.166 0.834 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.021 0.979 43 H 0.019 0.981 44 H 0.367 0.633 45 H 0.243 0.757 46 H 0.061 0.939 47 H 0.090 0.910 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.791 -2.625 -20.114 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.232 6.232 3 C 0.027 3.973 4 C -0.125 4.125 5 N -0.173 5.173 6 C -0.067 4.067 7 C -0.143 4.143 8 C 0.303 3.697 9 O -0.352 6.352 10 N -0.341 5.341 11 C -0.021 4.021 12 C -0.165 4.165 13 C -0.149 4.149 14 C -0.157 4.157 15 C 0.044 3.956 16 H 0.085 0.915 17 C 0.036 3.964 18 N -0.341 5.341 19 C -0.342 4.342 20 H 0.081 0.919 21 C -0.274 4.274 22 N -0.626 5.626 23 Si 0.795 3.205 24 H -0.212 1.212 25 H -0.227 1.227 26 H -0.203 1.203 27 C -0.062 4.062 28 C -0.149 4.149 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.142 0.858 32 H 0.212 0.788 33 H 0.183 0.817 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.039 0.961 43 H 0.036 0.964 44 H 0.199 0.801 45 H 0.052 0.948 46 H 0.080 0.920 47 H 0.109 0.891 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.731 -2.596 -19.591 22.982 hybrid contribution 0.412 -0.763 1.599 1.819 sum -11.319 -3.360 -17.992 21.521 Atomic orbital electron populations 1.23506 0.75594 1.06300 1.02837 1.86086 1.24020 1.24842 1.88275 1.19691 0.91581 0.86992 0.99028 1.23496 1.01969 0.86241 1.00817 1.67562 1.11490 1.26804 1.11416 1.22875 0.88640 0.98181 0.96997 1.20911 0.95133 0.94312 1.03962 1.18320 0.86761 0.82870 0.81722 1.91233 1.62975 1.43685 1.37347 1.47825 1.08164 1.46908 1.31237 1.22026 0.95181 0.97878 0.87001 1.21900 0.96556 1.02034 0.95965 1.21494 0.94730 0.99952 0.98720 1.21859 1.00354 1.00946 0.92590 1.21428 0.79335 0.98627 0.96173 0.91508 1.20928 0.94415 0.96609 0.84401 1.42378 1.45825 1.45249 1.00688 1.19471 1.14090 1.14249 0.86344 0.91926 1.25334 1.00806 1.01359 0.99918 1.69820 1.34603 1.36276 1.21904 0.85246 0.76995 0.78231 0.80053 1.21240 1.22720 1.20289 1.19860 0.92057 0.95398 0.98860 1.20505 0.98104 0.93895 1.02425 0.91577 0.90515 0.85752 0.78812 0.81736 0.90061 0.90281 0.92374 0.88193 0.91010 0.89635 0.89676 0.92177 0.96142 0.96354 0.80065 0.94791 0.92016 0.89128 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.82 113.37 1.11 1.25 16 2 O -0.32 -7.34 9.75 -92.71 -0.90 -8.24 16 3 C 0.07 2.06 6.68 22.56 0.15 2.21 16 4 C 0.03 0.80 10.21 84.83 0.87 1.67 16 5 N -0.46 -13.56 10.34 -194.39 -2.01 -15.57 16 6 C 0.09 2.90 8.77 85.03 0.75 3.64 16 7 C -0.14 -4.88 4.79 -20.00 -0.10 -4.98 16 8 C 0.52 20.68 5.63 86.79 0.49 21.17 16 9 O -0.48 -24.15 9.41 -3.88 -0.04 -24.18 16 10 N -0.60 -19.48 2.97 -798.37 -2.37 -21.85 16 11 C 0.10 2.30 5.32 86.36 0.46 2.76 16 12 C -0.13 -2.17 6.09 30.69 0.19 -1.99 16 13 C -0.11 -1.90 5.88 30.63 0.18 -1.72 16 14 C -0.12 -2.81 5.37 30.67 0.16 -2.65 16 15 C 0.15 4.88 2.95 44.97 0.13 5.01 16 16 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 17 C 0.16 7.17 4.87 86.38 0.42 7.59 16 18 N -0.70 -38.69 3.15 -343.45 -1.08 -39.77 16 19 C -0.21 -12.76 9.68 84.03 0.81 -11.95 16 20 H 0.06 3.76 7.83 -2.91 -0.02 3.74 16 21 C -0.08 -5.21 5.50 84.86 0.47 -4.74 16 22 N -0.97 -64.24 13.06 21.65 0.28 -63.96 16 23 Si 0.96 50.52 29.55 68.60 2.03 52.55 16 24 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 25 H -0.30 -15.86 7.11 99.48 0.71 -15.15 16 26 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 27 C -0.05 -1.76 5.96 -19.30 -0.12 -1.87 16 28 C -0.09 -3.04 9.01 71.24 0.64 -2.40 16 29 H 0.07 0.72 7.67 -2.39 -0.02 0.70 16 30 H 0.08 0.65 7.67 -2.39 -0.02 0.63 16 31 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.20 3.16 6.30 -2.91 -0.02 3.14 16 33 H 0.17 4.92 7.42 -2.91 -0.02 4.90 16 34 H 0.08 1.86 5.19 -2.39 -0.01 1.85 16 35 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.02 0.99 6.49 -2.39 -0.02 0.98 16 43 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 44 H 0.37 21.74 6.83 -92.71 -0.63 21.10 16 45 H 0.24 15.67 8.31 -92.71 -0.77 14.90 16 46 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.09 2.44 7.76 -2.39 -0.02 2.42 16 48 H 0.06 2.06 6.62 -2.39 -0.02 2.04 16 Total: -1.00 -81.01 373.75 2.86 -78.15 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.34 Total: 29.87 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 6.62 Total: 13.01 kcal Atomic # 7 Polarization: -135.96 SS G_CDS: -5.18 Total: -141.15 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.94 Total: -32.42 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 2.03 Total: 52.55 kcal Total: -81.01 2.86 -78.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265674132.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.955 kcal (2) G-P(sol) polarization free energy of solvation -81.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds