Wall clock time and date at job start Tue Mar 31 2020 17:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35925 * 117.00335 * 2 1 4 4 C 1.38852 * 120.40022 * 359.72300 * 3 2 1 5 5 N 1.31880 * 120.99619 * 179.74980 * 4 3 2 6 6 C 1.31685 * 121.94157 * 0.54222 * 5 4 3 7 7 C 1.39525 * 120.69141 * 359.72572 * 6 5 4 8 8 C 1.47852 * 120.53283 * 179.97438 * 7 6 5 9 9 O 1.21548 * 120.00160 * 229.39287 * 8 7 6 10 10 N 1.34775 * 119.99837 * 49.39070 * 8 7 6 11 11 C 1.46928 * 120.63247 * 5.50885 * 10 8 7 12 12 C 1.53627 * 108.54063 * 126.36665 * 11 10 8 13 13 C 1.53037 * 109.24283 * 54.86076 * 12 11 10 14 14 C 1.53043 * 109.53734 * 298.50810 * 13 12 11 15 15 C 1.46925 * 120.63122 * 185.78628 * 10 8 7 16 16 H 1.09006 * 109.58571 * 113.80029 * 15 10 8 17 17 C 1.53002 * 109.58530 * 353.52155 * 15 10 8 18 18 N 1.46498 * 109.47291 * 67.14294 * 17 15 10 19 19 C 1.36939 * 119.99795 * 174.53655 * 18 17 15 20 20 H 1.07994 * 120.00244 * 0.02562 * 19 18 17 21 21 C 1.38822 * 119.99572 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99797 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99549 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47542 * 59.99982 * 23 21 19 25 25 H 1.48505 * 109.47155 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47185 * 299.99629 * 23 21 19 27 27 C 1.38836 * 120.40706 * 180.02562 * 3 2 1 28 28 C 1.50696 * 120.88213 * 359.95590 * 27 3 2 29 29 H 1.08999 * 109.47405 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46708 * 299.99785 * 1 2 3 31 31 H 1.08998 * 109.47378 * 59.99581 * 1 2 3 32 32 H 1.08002 * 119.50286 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.65253 * 179.74651 * 6 5 4 34 34 H 1.08995 * 109.58803 * 246.20031 * 11 10 8 35 35 H 1.09003 * 109.58346 * 6.62678 * 11 10 8 36 36 H 1.08996 * 109.63782 * 294.86447 * 12 11 10 37 37 H 1.09000 * 109.45703 * 174.74233 * 12 11 10 38 38 H 1.09005 * 109.46069 * 178.49303 * 13 12 11 39 39 H 1.08995 * 109.45025 * 58.52096 * 13 12 11 40 40 H 1.09004 * 109.49545 * 301.41512 * 14 13 12 41 41 H 1.08998 * 109.49710 * 181.31979 * 14 13 12 42 42 H 1.09001 * 109.46842 * 187.14234 * 17 15 10 43 43 H 1.09000 * 109.46884 * 307.14111 * 17 15 10 44 44 H 0.96995 * 119.99794 * 354.53245 * 18 17 15 45 45 H 0.96999 * 119.99658 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.47516 * 88.08097 * 28 27 3 47 47 H 1.09000 * 109.47504 * 208.08232 * 28 27 3 48 48 H 1.09004 * 109.47032 * 328.08592 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 -0.0058 5 7 1.8846 3.5621 -0.0009 6 6 3.1953 3.6891 -0.0010 7 6 4.0199 2.5636 -0.0006 8 6 5.4911 2.7103 -0.0012 9 8 6.1636 2.0883 -0.8002 10 7 6.0866 3.5337 0.8841 11 6 5.3017 4.1991 1.9328 12 6 5.9463 3.8938 3.2934 13 6 7.4203 4.3037 3.2566 14 6 8.1508 3.4914 2.1848 15 6 7.5321 3.7877 0.8151 16 1 7.7076 4.8311 0.5529 17 6 8.1625 2.8800 -0.2430 18 7 7.6830 3.2716 -1.5707 19 6 8.1980 2.6719 -2.6890 20 1 8.9573 1.9101 -2.5920 21 6 7.7432 3.0426 -3.9471 22 7 6.8167 3.9700 -4.0650 23 14 8.4452 2.2242 -5.4724 24 1 8.1867 0.7630 -5.4136 25 1 7.7983 2.7935 -6.6818 26 1 9.9091 2.4658 -5.5345 27 6 3.4320 1.2935 -0.0005 28 6 4.2809 0.0484 -0.0001 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.2197 2.3226 -0.0107 33 1 3.6366 4.6748 -0.0011 34 1 5.2990 5.2753 1.7599 35 1 4.2790 3.8221 1.9185 36 1 5.8705 2.8269 3.5035 37 1 5.4318 4.4555 4.0731 38 1 7.8746 4.1133 4.2290 39 1 7.4959 5.3654 3.0220 40 1 8.0542 2.4283 2.4053 41 1 9.2053 3.7671 2.1752 42 1 9.2475 2.9772 -0.2052 43 1 7.8834 1.8448 -0.0465 44 1 7.0007 3.9555 -1.6577 45 1 6.4992 4.2292 -4.9441 46 1 4.4569 -0.2718 -1.0271 47 1 5.2349 0.2591 0.4832 48 1 3.7650 -0.7429 0.5438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265674133.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:34 Heat of formation + Delta-G solvation = -4.119564 kcal Electronic energy + Delta-G solvation = -30639.558195 eV Core-core repulsion = 26696.070397 eV Total energy + Delta-G solvation = -3943.487799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.21326 -41.07564 -39.08291 -38.16054 -36.38642 -34.78527 -33.99100 -33.59135 -31.66260 -31.28872 -28.96663 -28.48621 -27.65050 -25.99684 -24.76662 -24.35843 -23.57266 -22.60614 -21.62352 -20.38044 -19.33559 -18.59055 -18.41225 -17.46834 -17.16176 -16.99446 -16.74244 -16.61263 -15.94994 -15.50026 -15.43959 -15.19567 -15.09115 -15.02933 -14.67204 -14.48173 -14.11013 -14.01144 -13.88734 -13.80604 -13.62094 -13.39176 -13.10487 -12.89320 -12.77447 -12.74915 -12.69809 -12.35859 -12.18079 -12.07475 -11.85411 -11.70500 -11.48513 -11.36235 -10.94860 -10.76799 -10.49055 -9.85389 -9.49142 -9.45059 -8.58471 -7.83907 -5.01614 -0.27718 0.11027 1.42201 1.46594 1.51858 1.85619 1.99188 2.33432 2.60922 2.64388 3.35991 3.45389 3.50112 3.56995 3.68053 3.83012 3.86307 3.96967 4.10268 4.13509 4.23537 4.35651 4.37898 4.40590 4.41152 4.47428 4.51423 4.61075 4.61614 4.68767 4.75551 4.76066 4.90141 4.99662 5.00826 5.06966 5.10271 5.14402 5.16667 5.25764 5.33445 5.36398 5.51522 5.54759 5.83744 6.16327 6.36902 6.57781 6.76360 7.42482 7.47801 8.23344 8.45761 9.40588 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008691 B = 0.005306 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3220.975993 B = 5275.567138 C = 7472.340584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.075 3.925 4 C 0.033 3.967 5 N -0.463 5.463 6 C 0.091 3.909 7 C -0.138 4.138 8 C 0.519 3.481 9 O -0.481 6.481 10 N -0.605 5.605 11 C 0.101 3.899 12 C -0.126 4.126 13 C -0.112 4.112 14 C -0.119 4.119 15 C 0.148 3.852 16 H 0.067 0.933 17 C 0.163 3.837 18 N -0.701 5.701 19 C -0.210 4.210 20 H 0.063 0.937 21 C -0.083 4.083 22 N -0.973 5.973 23 Si 0.964 3.036 24 H -0.289 1.289 25 H -0.297 1.297 26 H -0.276 1.276 27 C -0.053 4.053 28 C -0.092 4.092 29 H 0.124 0.876 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.195 0.805 33 H 0.166 0.834 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.018 0.982 43 H 0.021 0.979 44 H 0.367 0.633 45 H 0.244 0.756 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.780 -2.597 20.047 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.232 6.232 3 C 0.027 3.973 4 C -0.125 4.125 5 N -0.173 5.173 6 C -0.067 4.067 7 C -0.143 4.143 8 C 0.304 3.696 9 O -0.353 6.353 10 N -0.341 5.341 11 C -0.021 4.021 12 C -0.164 4.164 13 C -0.149 4.149 14 C -0.157 4.157 15 C 0.044 3.956 16 H 0.085 0.915 17 C 0.036 3.964 18 N -0.342 5.342 19 C -0.343 4.343 20 H 0.081 0.919 21 C -0.274 4.274 22 N -0.626 5.626 23 Si 0.794 3.206 24 H -0.216 1.216 25 H -0.223 1.223 26 H -0.202 1.202 27 C -0.062 4.062 28 C -0.149 4.149 29 H 0.142 0.858 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.212 0.788 33 H 0.183 0.817 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.036 0.964 43 H 0.039 0.961 44 H 0.199 0.801 45 H 0.052 0.948 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.719 -2.555 19.520 22.911 hybrid contribution 0.411 -0.785 -1.589 1.819 sum -11.308 -3.340 17.931 21.460 Atomic orbital electron populations 1.23505 0.75590 1.06300 1.02838 1.86082 1.24022 1.24850 1.88285 1.19684 0.91574 0.86991 0.99043 1.23498 1.01973 0.86241 1.00785 1.67563 1.11484 1.26805 1.11421 1.22875 0.88641 0.98177 0.96987 1.20910 0.95136 0.94318 1.03984 1.18322 0.86758 0.82864 0.81706 1.91228 1.62997 1.43759 1.37290 1.47833 1.08133 1.46768 1.31409 1.22132 0.95192 0.97793 0.86995 1.21961 0.96533 1.01982 0.95953 1.21493 0.94747 0.99945 0.98713 1.21859 1.00342 1.00948 0.92589 1.21425 0.79336 0.98635 0.96154 0.91544 1.20926 0.94388 0.96630 0.84412 1.42364 1.46217 1.44890 1.00687 1.19437 1.14412 1.14080 0.86336 0.91945 1.25332 1.00838 1.01277 0.99925 1.69806 1.34728 1.35990 1.22066 0.85328 0.77912 0.77615 0.79696 1.21590 1.22314 1.20241 1.19859 0.92062 0.95399 0.98842 1.20498 0.98102 0.93930 1.02356 0.85752 0.90525 0.91566 0.78805 0.81728 0.90224 0.90018 0.92342 0.88274 0.89635 0.90993 0.92177 0.89690 0.96405 0.96116 0.80080 0.94771 0.92100 0.92329 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.82 113.37 1.11 1.25 16 2 O -0.32 -7.34 9.70 -92.71 -0.90 -8.24 16 3 C 0.07 2.06 6.68 22.56 0.15 2.21 16 4 C 0.03 0.81 10.21 84.83 0.87 1.68 16 5 N -0.46 -13.56 10.34 -194.39 -2.01 -15.57 16 6 C 0.09 2.90 8.76 85.03 0.75 3.65 16 7 C -0.14 -4.89 4.80 -20.01 -0.10 -4.99 16 8 C 0.52 20.70 5.64 86.79 0.49 21.19 16 9 O -0.48 -24.18 9.44 -3.87 -0.04 -24.21 16 10 N -0.60 -19.49 2.97 -797.56 -2.37 -21.86 16 11 C 0.10 2.30 5.35 86.51 0.46 2.76 16 12 C -0.13 -2.18 6.10 30.82 0.19 -1.99 16 13 C -0.11 -1.91 5.88 30.62 0.18 -1.73 16 14 C -0.12 -2.82 5.38 30.67 0.16 -2.65 16 15 C 0.15 4.89 2.94 44.97 0.13 5.02 16 16 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 17 C 0.16 7.17 4.87 86.38 0.42 7.59 16 18 N -0.70 -38.72 3.16 -343.44 -1.08 -39.80 16 19 C -0.21 -12.83 9.67 84.04 0.81 -12.02 16 20 H 0.06 3.74 7.83 -2.91 -0.02 3.72 16 21 C -0.08 -5.18 5.50 84.87 0.47 -4.71 16 22 N -0.97 -64.21 13.06 21.65 0.28 -63.93 16 23 Si 0.96 50.49 29.55 68.60 2.03 52.52 16 24 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 25 H -0.30 -15.54 7.11 99.48 0.71 -14.83 16 26 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 27 C -0.05 -1.75 5.96 -19.31 -0.12 -1.87 16 28 C -0.09 -3.04 8.97 71.23 0.64 -2.40 16 29 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 0.65 7.69 -2.39 -0.02 0.63 16 31 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 32 H 0.20 3.16 6.30 -2.91 -0.02 3.14 16 33 H 0.17 4.92 7.41 -2.91 -0.02 4.90 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.87 5.18 -2.39 -0.01 1.86 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.02 1.01 6.48 -2.39 -0.02 0.99 16 44 H 0.37 21.73 6.85 -92.71 -0.63 21.10 16 45 H 0.24 15.70 8.31 -92.71 -0.77 14.93 16 46 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.06 2.06 6.76 -2.39 -0.02 2.04 16 48 H 0.09 2.45 7.68 -2.38 -0.02 2.43 16 Total: -1.00 -80.97 373.76 2.88 -78.09 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 0.34 Total: 30.00 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 6.62 Total: 13.00 kcal Atomic # 7 Polarization: -135.98 SS G_CDS: -5.18 Total: -141.16 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.94 Total: -32.46 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.03 Total: 52.52 kcal Total: -80.97 2.88 -78.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265674133.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.970 kcal (2) G-P(sol) polarization free energy of solvation -80.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds