Wall clock time and date at job start Tue Mar 31 2020 18:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40197 * 120.36731 * 2 1 4 4 C 1.35353 * 119.94675 * 179.76801 * 3 2 1 5 5 N 1.35766 * 120.70122 * 0.51093 * 4 3 2 6 6 C 1.46505 * 119.62458 * 179.75861 * 5 4 3 7 7 C 1.50695 * 109.47278 * 269.73100 * 6 5 4 8 8 O 1.21288 * 120.00004 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00131 * 179.97438 * 7 6 5 10 10 C 1.46928 * 120.63238 * 5.40797 * 9 7 6 11 11 C 1.53187 * 108.77786 * 126.40925 * 10 9 7 12 12 C 1.53043 * 109.31222 * 54.63939 * 11 10 9 13 13 C 1.53042 * 109.53579 * 298.63215 * 12 11 10 14 14 C 1.46926 * 120.63398 * 185.42573 * 9 7 6 15 15 H 1.08998 * 109.58579 * 113.65770 * 14 9 7 16 16 C 1.52999 * 109.58755 * 353.37716 * 14 9 7 17 17 N 1.46493 * 109.47576 * 179.97438 * 16 14 9 18 18 C 1.36940 * 120.00186 * 174.98252 * 17 16 14 19 19 H 1.07990 * 120.00041 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00047 * 180.02562 * 18 17 16 21 21 N 1.31612 * 119.99953 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99782 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46846 * 90.00459 * 22 20 18 24 24 H 1.48494 * 109.47146 * 210.00128 * 22 20 18 25 25 H 1.48497 * 109.47243 * 330.00586 * 22 20 18 26 26 C 1.34658 * 120.75155 * 359.48581 * 5 4 3 27 27 O 1.22058 * 119.98732 * 180.27431 * 26 5 4 28 28 C 1.36398 * 120.36927 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47420 * 269.97930 * 1 2 3 30 30 H 1.09006 * 109.47067 * 29.97644 * 1 2 3 31 31 H 1.08995 * 109.47345 * 149.97651 * 1 2 3 32 32 H 1.07993 * 120.02540 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.65092 * 180.27254 * 4 3 2 34 34 H 1.08993 * 109.46854 * 149.72825 * 6 5 4 35 35 H 1.09000 * 109.46753 * 29.72556 * 6 5 4 36 36 H 1.09000 * 109.58815 * 246.20636 * 10 9 7 37 37 H 1.09007 * 109.58184 * 6.62269 * 10 9 7 38 38 H 1.09002 * 109.49368 * 174.58949 * 11 10 9 39 39 H 1.08993 * 109.49975 * 294.65228 * 11 10 9 40 40 H 1.09002 * 109.45628 * 58.65112 * 12 11 10 41 41 H 1.09000 * 109.45864 * 178.62606 * 12 11 10 42 42 H 1.09000 * 109.49823 * 301.41754 * 13 12 11 43 43 H 1.08998 * 109.49554 * 181.31694 * 13 12 11 44 44 H 1.08999 * 109.47083 * 59.95391 * 16 14 9 45 45 H 1.09003 * 109.46850 * 299.96116 * 16 14 9 46 46 H 0.97006 * 119.99746 * 355.25899 * 17 16 14 47 47 H 0.97006 * 119.99908 * 179.97438 * 21 20 18 48 48 H 1.08000 * 120.34434 * 359.95748 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1997 0.0047 5 7 4.2538 0.0273 -0.0009 6 6 5.7188 0.0441 -0.0009 7 6 6.2210 0.0499 -1.4217 8 8 5.4329 0.0405 -2.3436 9 7 7.5460 0.0657 -1.6680 10 6 8.5134 -0.0419 -0.5673 11 6 9.4797 -1.1912 -0.8707 12 6 10.1141 -0.9694 -2.2456 13 6 9.0221 -0.9608 -3.3178 14 6 8.0506 0.1911 -3.0421 15 1 8.5682 1.1436 -3.1558 16 6 6.8811 0.1223 -4.0263 17 7 7.3868 0.2482 -5.3954 18 6 6.5319 0.1118 -6.4564 19 1 5.4849 -0.0890 -6.2839 20 6 7.0112 0.2305 -7.7537 21 7 6.1896 0.0989 -8.7734 22 14 8.8224 0.5772 -8.0521 23 1 9.5606 -0.7068 -8.1618 24 1 8.9780 1.3468 -9.3125 25 1 9.3685 1.3668 -6.9193 26 6 3.6017 -1.1508 -0.0009 27 8 4.2312 -2.1966 -0.0009 28 6 2.1965 -1.1768 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6822 2.1485 0.0004 33 1 4.1103 2.1343 0.0092 34 1 6.0922 -0.8416 0.5129 35 1 6.0718 0.9382 0.5129 36 1 9.0708 0.8906 -0.4784 37 1 7.9855 -0.2446 0.3646 38 1 10.2601 -1.2205 -0.1103 39 1 8.9345 -2.1349 -0.8690 40 1 10.6385 -0.0139 -2.2537 41 1 10.8205 -1.7731 -2.4535 42 1 8.4810 -1.9067 -3.2936 43 1 9.4769 -0.8262 -4.2992 44 1 6.1843 0.9347 -3.8199 45 1 6.3684 -0.8331 -3.9150 46 1 8.3281 0.4242 -5.5504 47 1 6.5246 0.1823 -9.6800 48 1 1.6682 -2.1188 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265684298.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:54 Heat of formation + Delta-G solvation = -1.150172 kcal Electronic energy + Delta-G solvation = -29680.224674 eV Core-core repulsion = 25736.865638 eV Total energy + Delta-G solvation = -3943.359036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.63850 -40.25001 -37.43439 -37.07097 -35.49485 -34.82516 -33.00174 -32.09358 -30.63086 -30.14508 -29.49863 -27.44659 -26.11013 -24.52777 -23.81883 -22.95425 -21.83240 -21.09621 -20.93605 -19.28148 -17.77135 -17.64201 -17.50703 -16.99072 -16.13842 -15.82013 -15.40368 -15.32220 -14.59296 -14.44040 -14.32954 -14.24382 -14.16158 -13.80090 -13.59440 -13.48985 -13.29037 -13.21151 -12.81702 -12.63826 -12.44910 -12.24868 -12.09632 -11.86825 -11.77487 -11.73619 -11.36646 -11.07408 -10.95482 -10.76665 -10.66560 -10.37124 -10.23833 -10.03406 -9.93331 -9.48080 -8.97088 -8.86484 -8.46708 -8.03937 -7.06976 -5.64921 -2.99019 0.72377 1.81189 2.32815 2.56236 2.95637 3.41557 3.43435 3.49549 3.58862 4.29089 4.33092 4.41796 4.55197 4.57624 4.67649 4.75200 4.81365 4.86416 4.89072 5.07701 5.09188 5.16270 5.23111 5.24714 5.32811 5.40233 5.42084 5.63278 5.63520 5.65917 5.70340 5.80956 5.83160 5.87111 5.90072 5.95570 6.09225 6.11768 6.26332 6.40564 6.43973 6.55172 6.96765 6.99484 7.16461 7.36710 7.99150 8.09978 8.22990 8.54559 9.33941 10.05689 10.25971 11.54215 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010943 B = 0.003752 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.206974 B = 7461.383629 C = 9380.391774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.015 3.985 3 C -0.228 4.228 4 C 0.145 3.855 5 N -0.482 5.482 6 C 0.071 3.929 7 C 0.493 3.507 8 O -0.496 6.496 9 N -0.604 5.604 10 C 0.107 3.893 11 C -0.135 4.135 12 C -0.121 4.121 13 C -0.129 4.129 14 C 0.138 3.862 15 H 0.071 0.929 16 C 0.169 3.831 17 N -0.761 5.761 18 C -0.230 4.230 19 H 0.090 0.910 20 C 0.000 4.000 21 N -0.938 5.938 22 Si 0.883 3.117 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.523 3.477 27 O -0.552 6.552 28 C -0.247 4.247 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.160 0.840 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.047 0.953 45 H 0.044 0.956 46 H 0.354 0.646 47 H 0.258 0.742 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.519 3.953 27.196 27.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.011 3.989 3 C -0.251 4.251 4 C 0.018 3.982 5 N -0.192 5.192 6 C -0.054 4.054 7 C 0.279 3.721 8 O -0.369 6.369 9 N -0.340 5.340 10 C -0.016 4.016 11 C -0.174 4.174 12 C -0.158 4.158 13 C -0.168 4.168 14 C 0.035 3.965 15 H 0.089 0.911 16 C 0.043 3.957 17 N -0.408 5.408 18 C -0.360 4.360 19 H 0.108 0.892 20 C -0.195 4.195 21 N -0.587 5.587 22 Si 0.713 3.287 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.326 3.674 27 O -0.434 6.434 28 C -0.269 4.269 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.163 0.837 33 H 0.177 0.823 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.187 0.813 47 H 0.068 0.932 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.749 3.227 26.578 26.783 hybrid contribution 1.471 0.329 -0.443 1.571 sum 0.721 3.557 26.135 26.386 Atomic orbital electron populations 1.20924 0.90396 1.03745 1.02859 1.20196 0.96772 0.92673 0.89210 1.20511 0.92349 0.98922 1.13362 1.21859 0.93627 0.89418 0.93304 1.45044 1.07118 1.07321 1.59753 1.21875 0.79848 1.06640 0.97074 1.20634 0.82762 0.77825 0.90915 1.90926 1.55164 1.46969 1.43821 1.48076 1.04750 1.73172 1.07963 1.21766 0.91366 0.99272 0.89194 1.21916 0.98645 0.98815 0.97991 1.21550 0.97925 1.01963 0.94379 1.21962 0.96393 0.99344 0.99072 1.21646 0.96633 0.97997 0.80214 0.91056 1.21245 0.91370 1.01055 0.82042 1.42940 1.07555 1.88363 1.01955 1.19068 0.92798 1.39963 0.84216 0.89235 1.24657 0.97018 1.02466 0.95354 1.69705 1.33552 1.57576 0.97848 0.86565 0.87036 0.77968 0.77094 1.21186 1.21808 1.20503 1.17067 0.89353 0.82394 0.78610 1.90950 1.69138 1.30271 1.53079 1.21909 0.92257 0.99571 1.13123 0.90251 0.90695 0.90762 0.83746 0.82254 0.85598 0.86456 0.91011 0.90140 0.90774 0.91201 0.91887 0.91643 0.91139 0.90273 0.93491 0.93805 0.81293 0.93238 0.83602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.03 36.00 0.36 -0.50 16 2 C 0.02 0.15 5.89 -104.55 -0.62 -0.46 16 3 C -0.23 -2.04 9.71 -39.87 -0.39 -2.43 16 4 C 0.14 1.36 10.28 -16.84 -0.17 1.19 16 5 N -0.48 -5.91 2.07 -121.07 -0.25 -6.16 16 6 C 0.07 0.74 4.22 -5.19 -0.02 0.72 16 7 C 0.49 7.32 7.67 -10.99 -0.08 7.24 16 8 O -0.50 -9.94 11.84 5.55 0.07 -9.87 16 9 N -0.60 -8.00 2.97 -165.22 -0.49 -8.49 16 10 C 0.11 0.91 6.33 -3.71 -0.02 0.89 16 11 C -0.14 -1.21 6.08 -26.61 -0.16 -1.37 16 12 C -0.12 -1.31 5.88 -26.69 -0.16 -1.47 16 13 C -0.13 -1.97 5.12 -26.61 -0.14 -2.10 16 14 C 0.14 2.26 3.04 -67.60 -0.21 2.05 16 15 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 16 C 0.17 3.76 4.10 -4.05 -0.02 3.74 16 17 N -0.76 -19.46 5.09 -59.91 -0.31 -19.77 16 18 C -0.23 -7.02 10.47 -15.06 -0.16 -7.18 16 19 H 0.09 3.00 8.06 -52.49 -0.42 2.57 16 20 C 0.00 0.00 5.50 -17.43 -0.10 -0.10 16 21 N -0.94 -30.89 13.97 55.49 0.78 -30.11 16 22 Si 0.88 22.87 27.73 -169.99 -4.71 18.15 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 25 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 26 C 0.52 8.05 7.40 -15.45 -0.11 7.93 16 27 O -0.55 -10.44 16.64 4.87 0.08 -10.36 16 28 C -0.25 -3.20 9.65 -39.38 -0.38 -3.58 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 32 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.16 0.93 8.03 -52.49 -0.42 0.51 16 34 H 0.13 1.28 6.71 -51.93 -0.35 0.93 16 35 H 0.12 0.66 7.98 -51.93 -0.41 0.25 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.48 5.96 -51.93 -0.31 0.17 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.08 1.31 7.19 -51.93 -0.37 0.94 16 44 H 0.05 1.14 6.44 -51.93 -0.33 0.80 16 45 H 0.04 1.11 7.04 -51.93 -0.37 0.74 16 46 H 0.35 8.59 4.64 -40.82 -0.19 8.40 16 47 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16 48 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 380.24 15.07 5.73 5.73 Total: -1.00 -40.58 380.24 -8.90 -49.48 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.42 Total: 6.83 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -2.37 Total: 4.57 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -0.27 Total: -64.53 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.15 Total: -20.23 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.71 Total: 18.15 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -40.58 -8.90 -49.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265684298.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.325 kcal (2) G-P(sol) polarization free energy of solvation -40.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds