Wall clock time and date at job start Tue Mar 31 2020 18:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40195 * 120.36885 * 2 1 4 4 C 1.35340 * 119.95138 * 179.97438 * 3 2 1 5 5 N 1.35767 * 120.70422 * 0.02562 * 4 3 2 6 6 C 1.46502 * 119.62714 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46777 * 270.01934 * 6 5 4 8 8 O 1.21280 * 120.00404 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99544 * 179.97438 * 7 6 5 10 10 C 1.46928 * 120.63525 * 354.94293 * 9 7 6 11 11 C 1.53191 * 108.77588 * 233.58394 * 10 9 7 12 12 C 1.53043 * 109.31199 * 305.36126 * 11 10 9 13 13 C 1.53040 * 109.53822 * 61.36676 * 12 11 10 14 14 C 1.46932 * 120.63039 * 174.65864 * 9 7 6 15 15 H 1.09003 * 109.58799 * 246.20567 * 14 9 7 16 16 C 1.53005 * 109.58461 * 6.62780 * 14 9 7 17 17 N 1.46498 * 109.47156 * 181.27332 * 16 14 9 18 18 C 1.36934 * 119.99942 * 185.48487 * 17 16 14 19 19 H 1.07997 * 120.00322 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99873 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99915 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99915 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47221 * 60.00455 * 22 20 18 24 24 H 1.48497 * 109.47272 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47290 * 300.00243 * 22 20 18 26 26 C 1.34654 * 120.74658 * 359.97438 * 5 4 3 27 27 O 1.22068 * 119.98493 * 179.97438 * 26 5 4 28 28 C 1.36402 * 120.36699 * 180.31263 * 2 1 3 29 29 H 1.09003 * 109.47331 * 89.99868 * 1 2 3 30 30 H 1.09002 * 109.47291 * 209.99420 * 1 2 3 31 31 H 1.08997 * 109.47517 * 329.99971 * 1 2 3 32 32 H 1.08004 * 120.02179 * 359.97438 * 3 2 1 33 33 H 1.08007 * 119.65091 * 180.02562 * 4 3 2 34 34 H 1.08999 * 109.47048 * 30.02142 * 6 5 4 35 35 H 1.08994 * 109.46655 * 150.02276 * 6 5 4 36 36 H 1.09005 * 109.58539 * 353.36388 * 10 9 7 37 37 H 1.08994 * 109.58734 * 113.79208 * 10 9 7 38 38 H 1.08999 * 109.49739 * 65.31248 * 11 10 9 39 39 H 1.08996 * 109.49886 * 185.37936 * 11 10 9 40 40 H 1.08998 * 109.46123 * 181.38244 * 12 11 10 41 41 H 1.08999 * 109.46040 * 301.35717 * 12 11 10 42 42 H 1.09005 * 109.49879 * 58.58405 * 13 12 11 43 43 H 1.08999 * 109.49894 * 178.65172 * 13 12 11 44 44 H 1.09002 * 109.47090 * 301.28189 * 16 14 9 45 45 H 1.09006 * 109.46611 * 61.27811 * 16 14 9 46 46 H 0.97005 * 120.00007 * 5.49581 * 17 16 14 47 47 H 0.97002 * 119.99938 * 180.02562 * 21 20 18 48 48 H 1.07996 * 120.35116 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5691 1.1997 0.0005 5 7 4.2538 0.0274 0.0005 6 6 5.7187 0.0442 0.0005 7 6 6.2210 0.0505 -1.4203 8 8 5.4329 0.0422 -2.3422 9 7 7.5459 0.0663 -1.6666 10 6 8.5107 0.1891 -0.5652 11 6 9.4507 1.3618 -0.8616 12 6 10.0899 1.1627 -2.2379 13 6 8.9983 1.1358 -3.3102 14 6 8.0533 -0.0451 -3.0410 15 1 8.5953 -0.9838 -3.1555 16 6 6.8824 -0.0022 -4.0250 17 7 7.3883 -0.1439 -5.3925 18 6 6.5331 -0.0221 -6.4550 19 1 5.4857 0.1788 -6.2849 20 6 7.0124 -0.1570 -7.7508 21 7 8.2888 -0.4024 -7.9581 22 14 5.8459 0.0099 -9.2002 23 1 5.2277 1.3600 -9.1851 24 1 6.5996 -0.1757 -10.4661 25 1 4.7830 -1.0225 -9.1016 26 6 3.6017 -1.1507 0.0005 27 8 4.2313 -2.1965 0.0001 28 6 2.1965 -1.1769 -0.0064 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3634 0.8899 0.5138 32 1 1.6821 2.1486 -0.0004 33 1 4.1103 2.1344 0.0009 34 1 6.0718 0.9381 0.5147 35 1 6.0922 -0.8417 0.5140 36 1 7.9785 0.3743 0.3678 37 1 9.0891 -0.7309 -0.4820 38 1 8.8841 2.2929 -0.8549 39 1 10.2301 1.4046 -0.1008 40 1 10.7780 1.9834 -2.4408 41 1 10.6357 0.2193 -2.2518 42 1 8.4359 2.0691 -3.2804 43 1 9.4560 1.0180 -4.2924 44 1 6.1936 -0.8181 -3.8059 45 1 6.3606 0.9499 -3.9275 46 1 8.3291 -0.3242 -5.5453 47 1 8.6238 -0.4963 -8.8636 48 1 1.6683 -2.1188 -0.0111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265684299.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:58 Heat of formation + Delta-G solvation = -5.406397 kcal Electronic energy + Delta-G solvation = -29594.322997 eV Core-core repulsion = 25650.779397 eV Total energy + Delta-G solvation = -3943.543600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.61832 -40.16692 -37.34454 -37.06516 -35.45699 -34.63405 -32.91874 -32.05313 -30.55613 -29.76526 -29.47104 -27.37942 -25.86198 -24.40009 -23.81750 -23.13780 -21.88341 -21.09782 -20.88098 -19.18802 -17.64859 -17.56692 -17.22113 -16.89243 -16.12720 -15.71892 -15.31459 -15.29119 -14.53988 -14.38062 -14.34989 -14.21643 -14.16429 -13.64250 -13.53286 -13.36754 -13.27678 -12.98709 -12.82352 -12.73976 -12.46158 -12.19194 -11.95388 -11.85388 -11.76490 -11.61572 -11.04026 -10.95456 -10.83924 -10.66771 -10.56629 -10.41081 -10.07931 -9.99677 -9.90605 -9.63181 -8.90086 -8.78205 -8.36733 -8.03099 -6.74405 -5.64481 -2.90724 0.72428 1.81033 2.35682 2.62742 3.02319 3.52959 3.56074 3.58374 3.60333 4.31494 4.34313 4.43365 4.56632 4.62281 4.72955 4.80211 4.82981 4.89551 4.94742 5.08370 5.18153 5.20071 5.30744 5.33822 5.34847 5.40913 5.56235 5.61636 5.69382 5.76121 5.79391 5.82163 5.92242 5.97859 5.98352 6.21376 6.21776 6.25344 6.28759 6.40930 6.54041 6.73066 6.97671 7.10923 7.28489 7.46482 7.85337 8.00426 8.25053 8.56531 9.65954 10.24669 10.59969 11.59105 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009132 B = 0.003904 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.512760 B = 7170.762081 C = 9535.082466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.014 3.986 3 C -0.230 4.230 4 C 0.146 3.854 5 N -0.481 5.481 6 C 0.071 3.929 7 C 0.493 3.507 8 O -0.499 6.499 9 N -0.603 5.603 10 C 0.106 3.894 11 C -0.133 4.133 12 C -0.121 4.121 13 C -0.125 4.125 14 C 0.140 3.860 15 H 0.072 0.928 16 C 0.165 3.835 17 N -0.737 5.737 18 C -0.225 4.225 19 H 0.069 0.931 20 C -0.018 4.018 21 N -0.939 5.939 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 C 0.523 3.477 27 O -0.551 6.551 28 C -0.247 4.247 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.144 0.856 33 H 0.160 0.840 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.033 0.967 46 H 0.378 0.622 47 H 0.253 0.747 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.038 6.829 24.958 26.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.011 3.989 3 C -0.253 4.253 4 C 0.019 3.981 5 N -0.192 5.192 6 C -0.055 4.055 7 C 0.279 3.721 8 O -0.372 6.372 9 N -0.338 5.338 10 C -0.017 4.017 11 C -0.171 4.171 12 C -0.159 4.159 13 C -0.163 4.163 14 C 0.038 3.962 15 H 0.090 0.910 16 C 0.038 3.962 17 N -0.383 5.383 18 C -0.357 4.357 19 H 0.087 0.913 20 C -0.213 4.213 21 N -0.589 5.589 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.214 1.214 26 C 0.325 3.675 27 O -0.433 6.433 28 C -0.269 4.269 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.162 0.838 33 H 0.177 0.823 34 H 0.134 0.866 35 H 0.144 0.856 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.212 0.788 47 H 0.063 0.937 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.198 6.153 24.370 25.667 hybrid contribution -0.113 0.146 -0.952 0.970 sum -5.311 6.299 23.418 24.825 Atomic orbital electron populations 1.20923 0.90433 1.03273 1.03274 1.20188 0.96730 0.92684 0.89315 1.20494 0.92346 0.98885 1.13601 1.21852 0.93611 0.89448 0.93188 1.45052 1.07193 1.07288 1.59644 1.21898 0.79737 1.06605 0.97274 1.20591 0.82860 0.77915 0.90771 1.90904 1.55238 1.47286 1.43811 1.48106 1.04700 1.72878 1.08165 1.21766 0.91580 0.99316 0.89045 1.21914 0.98742 0.98230 0.98248 1.21559 0.98056 1.02073 0.94226 1.22000 0.96323 0.98445 0.99521 1.21739 0.96698 0.98091 0.79697 0.90978 1.21252 0.91441 1.00135 0.83323 1.42544 1.09028 1.86724 0.99996 1.19182 0.91408 1.39668 0.85393 0.91348 1.24689 0.96098 1.03347 0.97183 1.69645 1.12308 1.56857 1.20087 0.86269 0.79898 0.77832 0.82264 1.21412 1.21768 1.21367 1.17075 0.89348 0.82423 0.78643 1.90959 1.69136 1.30266 1.52957 1.21908 0.92271 0.99551 1.13128 0.89995 0.90909 0.90867 0.83795 0.82295 0.86568 0.85569 0.90330 0.90954 0.91553 0.90873 0.91744 0.91795 0.91746 0.89513 0.93960 0.94885 0.78810 0.93687 0.83618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.03 36.00 0.36 -0.48 16 2 C 0.01 0.15 5.89 -104.55 -0.62 -0.47 16 3 C -0.23 -2.05 9.71 -39.88 -0.39 -2.44 16 4 C 0.15 1.38 10.28 -16.84 -0.17 1.21 16 5 N -0.48 -6.01 2.07 -121.06 -0.25 -6.26 16 6 C 0.07 0.77 4.22 -5.19 -0.02 0.74 16 7 C 0.49 7.60 7.67 -10.99 -0.08 7.51 16 8 O -0.50 -10.19 11.84 5.56 0.07 -10.13 16 9 N -0.60 -8.46 2.97 -164.96 -0.49 -8.95 16 10 C 0.11 0.97 6.32 -3.71 -0.02 0.95 16 11 C -0.13 -1.15 6.08 -26.61 -0.16 -1.31 16 12 C -0.12 -1.37 5.88 -26.69 -0.16 -1.53 16 13 C -0.12 -1.95 5.17 -26.39 -0.14 -2.08 16 14 C 0.14 2.46 3.03 -67.37 -0.20 2.26 16 15 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 16 C 0.16 3.83 4.10 -4.04 -0.02 3.81 16 17 N -0.74 -20.07 5.29 -59.90 -0.32 -20.38 16 18 C -0.22 -6.79 9.99 -15.06 -0.15 -6.94 16 19 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16 20 C -0.02 -0.55 5.50 -17.43 -0.10 -0.65 16 21 N -0.94 -29.43 13.06 55.49 0.72 -28.71 16 22 Si 0.91 23.70 29.55 -169.99 -5.02 18.68 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 C 0.52 8.14 7.40 -15.45 -0.11 8.03 16 27 O -0.55 -10.61 16.64 4.86 0.08 -10.53 16 28 C -0.25 -3.21 9.65 -39.38 -0.38 -3.59 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 32 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.16 0.95 8.04 -52.48 -0.42 0.53 16 34 H 0.12 0.70 7.35 -51.93 -0.38 0.32 16 35 H 0.13 1.35 7.36 -51.93 -0.38 0.97 16 36 H 0.08 0.48 5.96 -51.93 -0.31 0.17 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.57 7.31 -51.93 -0.38 1.19 16 44 H 0.04 1.11 6.34 -51.93 -0.33 0.79 16 45 H 0.03 0.82 7.13 -51.93 -0.37 0.45 16 46 H 0.38 10.48 6.90 -40.82 -0.28 10.20 16 47 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 48 H 0.15 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -39.45 383.63 -9.26 -48.71 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.47 Total: 6.75 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -2.36 Total: 5.03 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -0.33 Total: -64.30 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.15 Total: -20.65 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.02 Total: 18.68 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.45 -9.26 -48.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265684299.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.308 kcal (2) G-P(sol) polarization free energy of solvation -39.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds