Wall clock time and date at job start Tue Mar 31 2020 18:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40195 * 120.36885 * 2 1 4 4 C 1.35340 * 119.95138 * 179.97438 * 3 2 1 5 5 N 1.35767 * 120.70422 * 0.02562 * 4 3 2 6 6 C 1.46502 * 119.62714 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46777 * 270.01934 * 6 5 4 8 8 O 1.21280 * 120.00404 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99544 * 179.97438 * 7 6 5 10 10 C 1.46928 * 120.63525 * 354.94293 * 9 7 6 11 11 C 1.53191 * 108.77588 * 233.58394 * 10 9 7 12 12 C 1.53043 * 109.31199 * 305.36126 * 11 10 9 13 13 C 1.53040 * 109.53822 * 61.36676 * 12 11 10 14 14 C 1.46932 * 120.63039 * 174.65864 * 9 7 6 15 15 H 1.09003 * 109.58799 * 246.20567 * 14 9 7 16 16 C 1.53005 * 109.58461 * 6.62780 * 14 9 7 17 17 N 1.46498 * 109.47156 * 181.27332 * 16 14 9 18 18 C 1.36934 * 119.99942 * 185.48487 * 17 16 14 19 19 H 1.07997 * 120.00322 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99873 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99915 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99915 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47221 * 60.00455 * 22 20 18 24 24 H 1.48497 * 109.47272 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47290 * 300.00243 * 22 20 18 26 26 C 1.34654 * 120.74658 * 359.97438 * 5 4 3 27 27 O 1.22068 * 119.98493 * 179.97438 * 26 5 4 28 28 C 1.36402 * 120.36699 * 180.31263 * 2 1 3 29 29 H 1.09003 * 109.47331 * 89.99868 * 1 2 3 30 30 H 1.09002 * 109.47291 * 209.99420 * 1 2 3 31 31 H 1.08997 * 109.47517 * 329.99971 * 1 2 3 32 32 H 1.08004 * 120.02179 * 359.97438 * 3 2 1 33 33 H 1.08007 * 119.65091 * 180.02562 * 4 3 2 34 34 H 1.08999 * 109.47048 * 30.02142 * 6 5 4 35 35 H 1.08994 * 109.46655 * 150.02276 * 6 5 4 36 36 H 1.09005 * 109.58539 * 353.36388 * 10 9 7 37 37 H 1.08994 * 109.58734 * 113.79208 * 10 9 7 38 38 H 1.08999 * 109.49739 * 65.31248 * 11 10 9 39 39 H 1.08996 * 109.49886 * 185.37936 * 11 10 9 40 40 H 1.08998 * 109.46123 * 181.38244 * 12 11 10 41 41 H 1.08999 * 109.46040 * 301.35717 * 12 11 10 42 42 H 1.09005 * 109.49879 * 58.58405 * 13 12 11 43 43 H 1.08999 * 109.49894 * 178.65172 * 13 12 11 44 44 H 1.09002 * 109.47090 * 301.28189 * 16 14 9 45 45 H 1.09006 * 109.46611 * 61.27811 * 16 14 9 46 46 H 0.97005 * 120.00007 * 5.49581 * 17 16 14 47 47 H 0.97002 * 119.99938 * 180.02562 * 21 20 18 48 48 H 1.07996 * 120.35116 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5691 1.1997 0.0005 5 7 4.2538 0.0274 0.0005 6 6 5.7187 0.0442 0.0005 7 6 6.2210 0.0505 -1.4203 8 8 5.4329 0.0422 -2.3422 9 7 7.5459 0.0663 -1.6666 10 6 8.5107 0.1891 -0.5652 11 6 9.4507 1.3618 -0.8616 12 6 10.0899 1.1627 -2.2379 13 6 8.9983 1.1358 -3.3102 14 6 8.0533 -0.0451 -3.0410 15 1 8.5953 -0.9838 -3.1555 16 6 6.8824 -0.0022 -4.0250 17 7 7.3883 -0.1439 -5.3925 18 6 6.5331 -0.0221 -6.4550 19 1 5.4857 0.1788 -6.2849 20 6 7.0124 -0.1570 -7.7508 21 7 8.2888 -0.4024 -7.9581 22 14 5.8459 0.0099 -9.2002 23 1 5.2277 1.3600 -9.1851 24 1 6.5996 -0.1757 -10.4661 25 1 4.7830 -1.0225 -9.1016 26 6 3.6017 -1.1507 0.0005 27 8 4.2313 -2.1965 0.0001 28 6 2.1965 -1.1769 -0.0064 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3634 0.8899 0.5138 32 1 1.6821 2.1486 -0.0004 33 1 4.1103 2.1344 0.0009 34 1 6.0718 0.9381 0.5147 35 1 6.0922 -0.8417 0.5140 36 1 7.9785 0.3743 0.3678 37 1 9.0891 -0.7309 -0.4820 38 1 8.8841 2.2929 -0.8549 39 1 10.2301 1.4046 -0.1008 40 1 10.7780 1.9834 -2.4408 41 1 10.6357 0.2193 -2.2518 42 1 8.4359 2.0691 -3.2804 43 1 9.4560 1.0180 -4.2924 44 1 6.1936 -0.8181 -3.8059 45 1 6.3606 0.9499 -3.9275 46 1 8.3291 -0.3242 -5.5453 47 1 8.6238 -0.4963 -8.8636 48 1 1.6683 -2.1188 -0.0111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265684299.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:57 Heat of formation + Delta-G solvation = -33.197803 kcal Electronic energy + Delta-G solvation = -29595.528122 eV Core-core repulsion = 25650.779397 eV Total energy + Delta-G solvation = -3944.748726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.60509 -41.33948 -38.52433 -38.10124 -36.75471 -36.17992 -34.12651 -33.76661 -31.69851 -31.18726 -30.39956 -28.35150 -27.41312 -25.60396 -24.92609 -24.66187 -23.02847 -22.44865 -21.88514 -20.36993 -19.23378 -18.55235 -18.48953 -18.20031 -17.04934 -16.98684 -16.74716 -16.50654 -16.15173 -15.52396 -15.38738 -15.23654 -15.17663 -15.01759 -14.94103 -14.57371 -14.33396 -14.22989 -14.13885 -13.57693 -13.53293 -13.33570 -13.12562 -13.01285 -12.88362 -12.82068 -12.69039 -12.46744 -12.25653 -12.12823 -12.04384 -11.83734 -11.59978 -11.42608 -11.11412 -11.03201 -10.86914 -10.22203 -9.65597 -9.01432 -8.97226 -8.00097 -5.28676 -0.12711 0.91496 1.39964 1.42626 1.44809 1.49132 1.51486 1.95963 2.52358 2.65900 3.31973 3.35462 3.62928 3.70726 3.79163 3.83268 3.84620 3.95582 4.05142 4.09385 4.10531 4.15645 4.23789 4.33251 4.39135 4.39782 4.58872 4.66799 4.77591 4.80661 4.81733 4.88643 4.93345 5.04315 5.10032 5.12036 5.16698 5.23743 5.25365 5.27720 5.40691 5.47534 5.48241 5.60208 5.66205 6.04985 6.21914 6.35327 6.95784 7.08682 7.28266 8.01947 8.29934 9.23261 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009132 B = 0.003904 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.512760 B = 7170.762081 C = 9535.082466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.032 3.968 3 C -0.232 4.232 4 C 0.140 3.860 5 N -0.483 5.483 6 C 0.078 3.922 7 C 0.484 3.516 8 O -0.562 6.562 9 N -0.599 5.599 10 C 0.096 3.904 11 C -0.125 4.125 12 C -0.117 4.117 13 C -0.115 4.115 14 C 0.148 3.852 15 H 0.062 0.938 16 C 0.181 3.819 17 N -0.745 5.745 18 C -0.247 4.247 19 H 0.059 0.941 20 C -0.070 4.070 21 N -0.966 5.966 22 Si 0.974 3.026 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.502 3.498 27 O -0.612 6.612 28 C -0.295 4.295 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.183 0.817 33 H 0.203 0.797 34 H 0.179 0.821 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.007 0.993 45 H 0.015 0.985 46 H 0.373 0.627 47 H 0.254 0.746 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.127 9.713 27.373 29.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.028 3.972 3 C -0.254 4.254 4 C 0.015 3.985 5 N -0.192 5.192 6 C -0.047 4.047 7 C 0.272 3.728 8 O -0.440 6.440 9 N -0.333 5.333 10 C -0.025 4.025 11 C -0.162 4.162 12 C -0.155 4.155 13 C -0.153 4.153 14 C 0.045 3.955 15 H 0.080 0.920 16 C 0.055 3.945 17 N -0.390 5.390 18 C -0.379 4.379 19 H 0.077 0.923 20 C -0.262 4.262 21 N -0.617 5.617 22 Si 0.802 3.198 23 H -0.202 1.202 24 H -0.210 1.210 25 H -0.210 1.210 26 C 0.308 3.692 27 O -0.500 6.500 28 C -0.316 4.316 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.200 0.800 33 H 0.220 0.780 34 H 0.196 0.804 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.129 0.871 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.025 0.975 45 H 0.033 0.967 46 H 0.205 0.795 47 H 0.063 0.937 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.274 9.087 26.852 28.834 hybrid contribution -0.143 -0.680 -1.689 1.826 sum -5.417 8.407 25.162 27.077 Atomic orbital electron populations 1.21036 0.88000 1.04990 1.03872 1.20647 0.98551 0.92123 0.85851 1.21061 0.92536 0.99767 1.12061 1.22691 0.94431 0.89707 0.91708 1.45101 1.08048 1.07415 1.58663 1.22100 0.78954 1.09632 0.93991 1.21484 0.82660 0.76408 0.92288 1.90877 1.56766 1.50220 1.46174 1.48207 1.05478 1.71949 1.07689 1.22247 0.91279 1.00283 0.88668 1.21912 0.99387 0.97908 0.97032 1.21553 0.96643 1.02872 0.94402 1.21857 0.97019 0.96674 0.99784 1.21334 0.94573 0.98699 0.80937 0.91990 1.21033 0.92942 0.97539 0.82961 1.42698 1.08466 1.86563 1.01246 1.19435 0.91478 1.40201 0.86822 0.92322 1.25533 0.97901 1.03055 0.99710 1.69794 1.13895 1.57349 1.20640 0.85210 0.77816 0.78133 0.78597 1.20189 1.21030 1.21004 1.17496 0.90296 0.82737 0.78675 1.90897 1.70258 1.32295 1.56575 1.21905 0.91715 1.00797 1.17194 0.89664 0.90381 0.88050 0.79989 0.78003 0.80386 0.85293 0.86060 0.90156 0.90997 0.87084 0.90417 0.91514 0.92722 0.92890 0.97545 0.96666 0.79456 0.93719 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 10.03 71.24 0.71 -0.73 16 2 C 0.03 0.62 5.89 -19.82 -0.12 0.50 16 3 C -0.23 -3.45 9.71 22.08 0.21 -3.24 16 4 C 0.14 2.26 10.28 83.41 0.86 3.12 16 5 N -0.48 -11.62 2.07 -655.06 -1.36 -12.98 16 6 C 0.08 1.52 4.22 85.63 0.36 1.89 16 7 C 0.48 14.86 7.67 87.66 0.67 15.53 16 8 O -0.56 -24.19 11.84 -3.03 -0.04 -24.23 16 9 N -0.60 -16.39 2.97 -794.20 -2.36 -18.74 16 10 C 0.10 1.41 6.32 86.36 0.55 1.95 16 11 C -0.12 -1.60 6.08 30.67 0.19 -1.41 16 12 C -0.12 -2.39 5.88 30.62 0.18 -2.21 16 13 C -0.11 -3.66 5.17 30.82 0.16 -3.50 16 14 C 0.15 5.43 3.03 45.12 0.14 5.57 16 15 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 16 C 0.18 9.00 4.10 86.38 0.35 9.35 16 17 N -0.74 -43.00 5.29 -343.44 -1.82 -44.82 16 18 C -0.25 -15.59 9.99 84.04 0.84 -14.75 16 19 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 20 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 21 N -0.97 -61.97 13.06 21.65 0.28 -61.69 16 22 Si 0.97 49.55 29.55 68.60 2.03 51.57 16 23 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 24 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.28 -14.20 7.11 99.48 0.71 -13.50 16 26 C 0.50 16.44 7.40 84.82 0.63 17.07 16 27 O -0.61 -25.45 16.64 -5.54 -0.09 -25.54 16 28 C -0.29 -8.09 9.65 22.40 0.22 -7.87 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 31 H 0.10 0.65 8.10 -2.39 -0.02 0.63 16 32 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.20 1.39 8.04 -2.91 -0.02 1.36 16 34 H 0.18 1.17 7.35 -2.39 -0.02 1.15 16 35 H 0.13 2.55 7.36 -2.39 -0.02 2.53 16 36 H 0.12 0.79 5.96 -2.38 -0.01 0.78 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.05 1.81 8.14 -2.38 -0.02 1.80 16 43 H 0.05 2.02 7.31 -2.39 -0.02 2.00 16 44 H 0.01 0.39 6.34 -2.39 -0.02 0.37 16 45 H 0.02 0.81 7.13 -2.38 -0.02 0.79 16 46 H 0.37 21.91 6.90 -92.70 -0.64 21.27 16 47 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 48 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -96.15 383.63 3.39 -92.76 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.32 Total: 26.24 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 6.42 Total: 17.43 kcal Atomic # 7 Polarization: -132.98 SS G_CDS: -5.25 Total: -138.23 kcal Atomic # 8 Polarization: -49.64 SS G_CDS: -0.13 Total: -49.77 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 2.03 Total: 51.57 kcal Total: -96.15 3.39 -92.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265684299.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.559 kcal (2) G-P(sol) polarization free energy of solvation -96.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds