Wall clock time and date at job start Tue Mar 31 2020 18:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40188 * 120.36970 * 2 1 4 4 C 1.35353 * 119.95452 * 179.76979 * 3 2 1 5 5 N 1.35769 * 120.69440 * 0.50903 * 4 3 2 6 6 C 1.46501 * 119.61941 * 179.76186 * 5 4 3 7 7 C 1.50700 * 109.47354 * 269.72493 * 6 5 4 8 8 O 1.21285 * 119.99763 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00203 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99883 * 174.75648 * 9 7 6 11 11 C 1.53005 * 110.01879 * 65.10304 * 10 9 7 12 12 N 1.46501 * 109.46925 * 53.19984 * 11 10 9 13 13 C 1.36929 * 119.99871 * 185.04125 * 12 11 10 14 14 H 1.07995 * 120.00200 * 4.96951 * 13 12 11 15 15 C 1.38818 * 119.99965 * 184.97493 * 13 12 11 16 16 N 1.31615 * 119.99761 * 184.50592 * 15 13 12 17 17 Si 1.86801 * 119.99902 * 4.50650 * 15 13 12 18 18 H 1.48507 * 109.46965 * 93.75331 * 17 15 13 19 19 H 1.48493 * 109.46949 * 213.75021 * 17 15 13 20 20 H 1.48493 * 109.47064 * 333.75524 * 17 15 13 21 21 C 1.54273 * 110.07262 * 186.52214 * 10 9 7 22 22 C 1.54887 * 104.19401 * 95.69580 * 21 10 9 23 23 C 1.54890 * 102.75176 * 37.94544 * 22 21 10 24 24 C 1.53877 * 110.03428 * 303.71230 * 10 9 7 25 25 C 1.34651 * 120.75261 * 359.48665 * 5 4 3 26 26 O 1.22061 * 119.98407 * 180.27554 * 25 5 4 27 27 C 1.36409 * 120.36811 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.46966 * 269.97570 * 1 2 3 29 29 H 1.08998 * 109.47630 * 29.98052 * 1 2 3 30 30 H 1.09008 * 109.47085 * 149.97886 * 1 2 3 31 31 H 1.08001 * 120.02315 * 0.04559 * 3 2 1 32 32 H 1.07992 * 119.65287 * 180.27398 * 4 3 2 33 33 H 1.09002 * 109.46839 * 149.72515 * 6 5 4 34 34 H 1.08997 * 109.47023 * 29.72692 * 6 5 4 35 35 H 0.96998 * 120.00003 * 354.75482 * 9 7 6 36 36 H 1.08995 * 109.47034 * 173.20061 * 11 10 9 37 37 H 1.08997 * 109.46807 * 293.19978 * 11 10 9 38 38 H 0.97006 * 119.99775 * 5.04615 * 12 11 10 39 39 H 0.97006 * 120.00154 * 179.97438 * 16 15 13 40 40 H 1.09000 * 110.48107 * 214.37564 * 21 10 9 41 41 H 1.08995 * 110.48118 * 337.01665 * 21 10 9 42 42 H 1.09001 * 110.75682 * 279.62248 * 22 21 10 43 43 H 1.09005 * 110.75263 * 156.25506 * 22 21 10 44 44 H 1.09000 * 110.48338 * 203.37792 * 23 22 21 45 45 H 1.09000 * 110.48812 * 80.73080 * 23 22 21 46 46 H 1.09000 * 110.02932 * 359.95142 * 24 10 9 47 47 H 1.08994 * 110.03176 * 121.37944 * 24 10 9 48 48 H 1.08000 * 120.34533 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2157 1.2095 0.0000 4 6 3.5692 1.1997 0.0047 5 7 4.2538 0.0273 -0.0009 6 6 5.7187 0.0442 -0.0009 7 6 6.2211 0.0499 -1.4217 8 8 5.4330 0.0412 -2.3436 9 7 7.5460 0.0647 -1.6680 10 6 8.0365 -0.0457 -3.0440 11 6 7.6057 1.1791 -3.8534 12 7 8.0204 2.3975 -3.1536 13 6 7.6523 3.6242 -3.6380 14 1 6.9904 3.6925 -4.4886 15 6 8.1300 4.7801 -3.0357 16 7 7.7072 5.9578 -3.4440 17 14 9.3727 4.6641 -1.6459 18 1 10.7462 4.7773 -2.1993 19 1 9.1368 5.7650 -0.6778 20 1 9.2232 3.3576 -0.9561 21 6 9.5743 -0.1686 -3.0496 22 6 9.8331 -1.6940 -3.1228 23 6 8.7158 -2.1849 -4.0766 24 6 7.4907 -1.3277 -3.6970 25 6 3.6017 -1.1508 -0.0009 26 8 4.2312 -2.1965 -0.0009 27 6 2.1966 -1.1769 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3634 -0.8899 -0.5142 31 1 1.6821 2.1485 0.0007 32 1 4.1102 2.1343 0.0092 33 1 6.0922 -0.8416 0.5130 34 1 6.0717 0.9383 0.5129 35 1 8.1748 0.1484 -0.9342 36 1 8.0742 1.1477 -4.8371 37 1 6.5216 1.1765 -3.9671 38 1 8.5558 2.3352 -2.3471 39 1 8.0408 6.7656 -3.0229 40 1 9.9938 0.3319 -3.9224 41 1 9.9934 0.2459 -2.1328 42 1 9.7295 -2.1510 -2.1387 43 1 10.8177 -1.8989 -3.5434 44 1 8.5086 -3.2418 -3.9092 45 1 8.9967 -2.0100 -5.1152 46 1 6.8615 -1.8681 -2.9898 47 1 6.9189 -1.0772 -4.5904 48 1 1.6683 -2.1189 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267845029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:04 Heat of formation + Delta-G solvation = -24.201075 kcal Electronic energy + Delta-G solvation = -29907.628108 eV Core-core repulsion = 25963.269510 eV Total energy + Delta-G solvation = -3944.358598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.49625 -40.04732 -37.69225 -37.00052 -35.22538 -34.49801 -33.33879 -31.39367 -30.53322 -29.53392 -28.75964 -28.45980 -26.70462 -24.57938 -23.71695 -22.03301 -21.85471 -20.93443 -20.55417 -19.16534 -17.74617 -17.56942 -17.52289 -17.23526 -16.05870 -15.94755 -15.29780 -15.11518 -14.79376 -14.46958 -14.37216 -14.22951 -14.04956 -13.74793 -13.39054 -13.30855 -13.04921 -12.85840 -12.70654 -12.46722 -12.28037 -12.17215 -11.82671 -11.76425 -11.66093 -11.40893 -11.05732 -11.01504 -10.98525 -10.74812 -10.59113 -10.43659 -10.19192 -10.09212 -9.93635 -9.62849 -9.42902 -8.87757 -8.72867 -7.96872 -7.20012 -5.78269 -3.12101 0.80799 1.89381 2.46344 2.79541 3.23798 3.29580 3.32564 3.38388 3.71887 4.49994 4.52643 4.53951 4.57260 4.66653 4.73575 4.80142 4.93014 4.98922 5.01951 5.17892 5.27045 5.35683 5.36387 5.47234 5.48738 5.53259 5.58733 5.65795 5.69324 5.74657 5.84665 5.87902 5.92575 5.98550 6.03315 6.14882 6.25301 6.32981 6.36550 6.43244 6.48975 6.49729 6.79637 6.97243 7.06623 7.65969 8.01561 8.05408 8.39549 8.41980 9.21312 9.92891 10.15036 11.40620 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.004464 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.143364 B = 6270.806657 C = 8263.153061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.019 3.981 3 C -0.233 4.233 4 C 0.153 3.847 5 N -0.478 5.478 6 C 0.068 3.932 7 C 0.508 3.492 8 O -0.514 6.514 9 N -0.710 5.710 10 C 0.167 3.833 11 C 0.151 3.849 12 N -0.750 5.750 13 C -0.235 4.235 14 H 0.088 0.912 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.887 3.113 18 H -0.285 1.285 19 H -0.293 1.293 20 H -0.283 1.283 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.117 4.117 25 C 0.523 3.477 26 O -0.559 6.559 27 C -0.255 4.255 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.164 0.836 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.395 0.605 36 H 0.029 0.971 37 H 0.050 0.950 38 H 0.359 0.641 39 H 0.258 0.742 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.567 -14.154 9.505 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.015 3.985 3 C -0.256 4.256 4 C 0.025 3.975 5 N -0.188 5.188 6 C -0.058 4.058 7 C 0.292 3.708 8 O -0.388 6.388 9 N -0.362 5.362 10 C 0.082 3.918 11 C 0.023 3.977 12 N -0.396 5.396 13 C -0.365 4.365 14 H 0.106 0.894 15 C -0.194 4.194 16 N -0.584 5.584 17 Si 0.719 3.281 18 H -0.212 1.212 19 H -0.219 1.219 20 H -0.209 1.209 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.162 4.162 24 C -0.156 4.156 25 C 0.326 3.674 26 O -0.442 6.442 27 C -0.276 4.276 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.163 0.837 32 H 0.182 0.818 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.229 0.771 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.192 0.808 39 H 0.068 0.932 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.817 -14.682 8.662 18.012 hybrid contribution 1.216 0.402 1.341 1.854 sum -4.601 -14.280 10.002 18.032 Atomic orbital electron populations 1.20922 0.90492 1.03575 1.02897 1.20201 0.96676 0.92706 0.88933 1.20525 0.92360 0.98929 1.13751 1.22018 0.93714 0.89659 0.92067 1.44993 1.07204 1.07259 1.59299 1.21827 0.79801 1.06955 0.97174 1.20361 0.83045 0.76718 0.90693 1.90740 1.55099 1.47725 1.45245 1.45943 1.06309 1.74932 1.09037 1.21325 0.93261 0.96021 0.81223 1.21134 0.99147 0.84107 0.93336 1.42630 1.65005 1.01960 1.30024 1.19078 1.23073 0.81910 1.12409 0.89444 1.24675 1.00287 0.95106 0.99298 1.69711 1.47212 0.96731 1.44702 0.86518 0.82682 0.76191 0.82751 1.21226 1.21908 1.20945 1.22658 0.93723 0.96377 1.03280 1.22518 0.98551 0.95456 0.99613 1.22384 0.95191 0.99125 0.99495 1.22401 0.97402 0.94544 1.01218 1.17042 0.89312 0.82389 0.78625 1.90924 1.69229 1.30337 1.53722 1.21852 0.92283 0.99384 1.14118 0.90233 0.90683 0.90923 0.83666 0.81829 0.85612 0.86223 0.77086 0.95330 0.93247 0.80819 0.93173 0.89396 0.91336 0.91713 0.91521 0.91886 0.91464 0.91290 0.90803 0.83797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.03 36.00 0.36 -0.55 16 2 C 0.02 0.20 5.89 -104.55 -0.62 -0.41 16 3 C -0.23 -2.49 9.71 -39.88 -0.39 -2.88 16 4 C 0.15 1.82 10.28 -16.84 -0.17 1.64 16 5 N -0.48 -6.60 2.07 -121.07 -0.25 -6.85 16 6 C 0.07 0.85 5.82 -5.19 -0.03 0.82 16 7 C 0.51 8.13 6.94 -10.99 -0.08 8.05 16 8 O -0.51 -10.27 13.73 5.55 0.08 -10.19 16 9 N -0.71 -10.25 4.54 -46.57 -0.21 -10.46 16 10 C 0.17 2.61 0.57 -130.69 -0.07 2.53 16 11 C 0.15 3.04 4.63 -4.04 -0.02 3.02 16 12 N -0.75 -17.35 5.05 -59.91 -0.30 -17.66 16 13 C -0.23 -6.59 10.47 -15.06 -0.16 -6.75 16 14 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 15 C 0.00 0.04 5.50 -17.43 -0.10 -0.05 16 16 N -0.93 -29.03 13.97 55.49 0.78 -28.26 16 17 Si 0.89 21.31 27.99 -169.99 -4.76 16.56 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -6.09 6.18 56.52 0.35 -5.74 16 21 C -0.12 -1.63 5.71 -25.07 -0.14 -1.77 16 22 C -0.12 -1.36 6.91 -24.74 -0.17 -1.53 16 23 C -0.12 -1.47 6.83 -25.07 -0.17 -1.65 16 24 C -0.12 -1.73 5.23 -25.61 -0.13 -1.87 16 25 C 0.52 8.30 7.40 -15.45 -0.11 8.19 16 26 O -0.56 -10.54 16.64 4.86 0.08 -10.46 16 27 C -0.25 -3.37 9.65 -39.38 -0.38 -3.75 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.07 0.50 8.09 -51.92 -0.42 0.08 16 31 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.16 1.65 8.03 -52.49 -0.42 1.23 16 33 H 0.13 1.44 7.39 -51.93 -0.38 1.06 16 34 H 0.12 1.11 8.01 -51.93 -0.42 0.69 16 35 H 0.40 4.57 8.23 -40.82 -0.34 4.23 16 36 H 0.03 0.59 7.99 -51.93 -0.42 0.17 16 37 H 0.05 1.14 6.61 -51.93 -0.34 0.80 16 38 H 0.36 7.87 4.95 -40.82 -0.20 7.67 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.09 1.26 7.75 -51.93 -0.40 0.86 16 41 H 0.07 0.86 7.70 -51.93 -0.40 0.46 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 1.13 7.00 -51.93 -0.36 0.76 16 47 H 0.07 1.18 7.67 -51.93 -0.40 0.78 16 48 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -37.17 386.66 -8.64 -45.80 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -7.49 Total: 12.65 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -2.38 Total: 3.04 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: 0.01 Total: -63.22 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: 0.16 Total: -20.65 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.76 Total: 16.56 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.17 -8.64 -45.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267845029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.601 kcal (2) G-P(sol) polarization free energy of solvation -37.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds