Wall clock time and date at job start Tue Mar 31 2020 18:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40188 * 120.36970 * 2 1 4 4 C 1.35353 * 119.95452 * 179.76979 * 3 2 1 5 5 N 1.35769 * 120.69440 * 0.50903 * 4 3 2 6 6 C 1.46501 * 119.61941 * 179.76186 * 5 4 3 7 7 C 1.50700 * 109.47354 * 269.72493 * 6 5 4 8 8 O 1.21285 * 119.99763 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00203 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99883 * 174.75648 * 9 7 6 11 11 C 1.53005 * 110.01879 * 65.10304 * 10 9 7 12 12 N 1.46501 * 109.46925 * 53.19984 * 11 10 9 13 13 C 1.36929 * 119.99871 * 185.04125 * 12 11 10 14 14 H 1.07995 * 120.00200 * 4.96951 * 13 12 11 15 15 C 1.38818 * 119.99965 * 184.97493 * 13 12 11 16 16 N 1.31615 * 119.99761 * 184.50592 * 15 13 12 17 17 Si 1.86801 * 119.99902 * 4.50650 * 15 13 12 18 18 H 1.48507 * 109.46965 * 93.75331 * 17 15 13 19 19 H 1.48493 * 109.46949 * 213.75021 * 17 15 13 20 20 H 1.48493 * 109.47064 * 333.75524 * 17 15 13 21 21 C 1.54273 * 110.07262 * 186.52214 * 10 9 7 22 22 C 1.54887 * 104.19401 * 95.69580 * 21 10 9 23 23 C 1.54890 * 102.75176 * 37.94544 * 22 21 10 24 24 C 1.53877 * 110.03428 * 303.71230 * 10 9 7 25 25 C 1.34651 * 120.75261 * 359.48665 * 5 4 3 26 26 O 1.22061 * 119.98407 * 180.27554 * 25 5 4 27 27 C 1.36409 * 120.36811 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.46966 * 269.97570 * 1 2 3 29 29 H 1.08998 * 109.47630 * 29.98052 * 1 2 3 30 30 H 1.09008 * 109.47085 * 149.97886 * 1 2 3 31 31 H 1.08001 * 120.02315 * 0.04559 * 3 2 1 32 32 H 1.07992 * 119.65287 * 180.27398 * 4 3 2 33 33 H 1.09002 * 109.46839 * 149.72515 * 6 5 4 34 34 H 1.08997 * 109.47023 * 29.72692 * 6 5 4 35 35 H 0.96998 * 120.00003 * 354.75482 * 9 7 6 36 36 H 1.08995 * 109.47034 * 173.20061 * 11 10 9 37 37 H 1.08997 * 109.46807 * 293.19978 * 11 10 9 38 38 H 0.97006 * 119.99775 * 5.04615 * 12 11 10 39 39 H 0.97006 * 120.00154 * 179.97438 * 16 15 13 40 40 H 1.09000 * 110.48107 * 214.37564 * 21 10 9 41 41 H 1.08995 * 110.48118 * 337.01665 * 21 10 9 42 42 H 1.09001 * 110.75682 * 279.62248 * 22 21 10 43 43 H 1.09005 * 110.75263 * 156.25506 * 22 21 10 44 44 H 1.09000 * 110.48338 * 203.37792 * 23 22 21 45 45 H 1.09000 * 110.48812 * 80.73080 * 23 22 21 46 46 H 1.09000 * 110.02932 * 359.95142 * 24 10 9 47 47 H 1.08994 * 110.03176 * 121.37944 * 24 10 9 48 48 H 1.08000 * 120.34533 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2157 1.2095 0.0000 4 6 3.5692 1.1997 0.0047 5 7 4.2538 0.0273 -0.0009 6 6 5.7187 0.0442 -0.0009 7 6 6.2211 0.0499 -1.4217 8 8 5.4330 0.0412 -2.3436 9 7 7.5460 0.0647 -1.6680 10 6 8.0365 -0.0457 -3.0440 11 6 7.6057 1.1791 -3.8534 12 7 8.0204 2.3975 -3.1536 13 6 7.6523 3.6242 -3.6380 14 1 6.9904 3.6925 -4.4886 15 6 8.1300 4.7801 -3.0357 16 7 7.7072 5.9578 -3.4440 17 14 9.3727 4.6641 -1.6459 18 1 10.7462 4.7773 -2.1993 19 1 9.1368 5.7650 -0.6778 20 1 9.2232 3.3576 -0.9561 21 6 9.5743 -0.1686 -3.0496 22 6 9.8331 -1.6940 -3.1228 23 6 8.7158 -2.1849 -4.0766 24 6 7.4907 -1.3277 -3.6970 25 6 3.6017 -1.1508 -0.0009 26 8 4.2312 -2.1965 -0.0009 27 6 2.1966 -1.1769 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3634 -0.8899 -0.5142 31 1 1.6821 2.1485 0.0007 32 1 4.1102 2.1343 0.0092 33 1 6.0922 -0.8416 0.5130 34 1 6.0717 0.9383 0.5129 35 1 8.1748 0.1484 -0.9342 36 1 8.0742 1.1477 -4.8371 37 1 6.5216 1.1765 -3.9671 38 1 8.5558 2.3352 -2.3471 39 1 8.0408 6.7656 -3.0229 40 1 9.9938 0.3319 -3.9224 41 1 9.9934 0.2459 -2.1328 42 1 9.7295 -2.1510 -2.1387 43 1 10.8177 -1.8989 -3.5434 44 1 8.5086 -3.2418 -3.9092 45 1 8.9967 -2.0100 -5.1152 46 1 6.8615 -1.8681 -2.9898 47 1 6.9189 -1.0772 -4.5904 48 1 1.6683 -2.1189 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267845029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:03 Heat of formation + Delta-G solvation = -49.981832 kcal Electronic energy + Delta-G solvation = -29908.746046 eV Core-core repulsion = 25963.269510 eV Total energy + Delta-G solvation = -3945.476536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.55728 -41.28287 -38.92470 -38.10037 -36.33105 -36.19478 -34.66197 -33.39034 -31.52544 -30.61922 -29.89669 -29.70287 -27.74797 -26.20380 -24.68093 -23.80279 -22.96737 -22.05826 -21.59067 -20.60106 -19.62579 -18.72056 -18.53579 -18.33667 -17.26952 -17.02632 -16.52088 -16.44142 -16.35031 -15.90610 -15.61345 -15.19744 -15.18988 -14.94232 -14.82421 -14.59129 -14.18746 -14.15910 -13.86434 -13.75565 -13.56926 -13.36348 -13.04000 -12.87901 -12.84728 -12.66579 -12.48220 -12.27315 -12.08159 -12.01458 -11.96196 -11.83942 -11.74037 -11.46296 -11.21864 -11.09965 -10.95186 -10.50219 -10.04853 -9.27486 -9.00723 -8.01237 -5.35485 -0.14516 0.89100 1.33595 1.44241 1.46161 1.50671 1.57028 2.17175 2.49241 2.68217 3.28564 3.38247 3.57497 3.62951 3.64562 3.70714 3.81979 3.87653 3.94822 4.06793 4.13016 4.30717 4.32460 4.37146 4.44312 4.49953 4.63143 4.75815 4.76301 4.81290 4.82361 4.86581 4.89339 5.03772 5.04646 5.08993 5.13183 5.20769 5.21518 5.28226 5.44974 5.46234 5.61547 5.63062 5.76160 6.03917 6.20626 6.50771 6.94624 7.08562 7.23074 7.80828 8.08643 9.20870 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.004464 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.143364 B = 6270.806657 C = 8263.153061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.032 3.968 3 C -0.230 4.230 4 C 0.136 3.864 5 N -0.480 5.480 6 C 0.070 3.930 7 C 0.500 3.500 8 O -0.563 6.563 9 N -0.701 5.701 10 C 0.172 3.828 11 C 0.155 3.845 12 N -0.740 5.740 13 C -0.236 4.236 14 H 0.038 0.962 15 C -0.063 4.063 16 N -0.986 5.986 17 Si 0.964 3.036 18 H -0.282 1.282 19 H -0.295 1.295 20 H -0.238 1.238 21 C -0.121 4.121 22 C -0.111 4.111 23 C -0.120 4.120 24 C -0.112 4.112 25 C 0.506 3.494 26 O -0.607 6.607 27 C -0.286 4.286 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.175 0.825 32 H 0.183 0.817 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.413 0.587 36 H 0.022 0.978 37 H 0.013 0.987 38 H 0.370 0.630 39 H 0.258 0.742 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.051 0.949 47 H 0.049 0.951 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.102 -14.658 12.123 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.028 3.972 3 C -0.252 4.252 4 C 0.009 3.991 5 N -0.189 5.189 6 C -0.055 4.055 7 C 0.286 3.714 8 O -0.441 6.441 9 N -0.354 5.354 10 C 0.086 3.914 11 C 0.027 3.973 12 N -0.387 5.387 13 C -0.367 4.367 14 H 0.056 0.944 15 C -0.254 4.254 16 N -0.636 5.636 17 Si 0.791 3.209 18 H -0.209 1.209 19 H -0.221 1.221 20 H -0.163 1.163 21 C -0.159 4.159 22 C -0.149 4.149 23 C -0.158 4.158 24 C -0.151 4.151 25 C 0.311 3.689 26 O -0.494 6.494 27 C -0.308 4.308 28 H 0.119 0.881 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.192 0.808 32 H 0.200 0.800 33 H 0.154 0.846 34 H 0.176 0.824 35 H 0.251 0.749 36 H 0.040 0.960 37 H 0.031 0.969 38 H 0.204 0.796 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.338 -15.208 11.308 19.442 hybrid contribution 0.586 0.667 0.389 0.969 sum -3.752 -14.542 11.696 19.035 Atomic orbital electron populations 1.21030 0.87725 1.04525 1.04472 1.20613 0.98634 0.91839 0.86081 1.21007 0.92223 1.00085 1.11900 1.22508 0.94609 0.89646 0.92309 1.45023 1.07843 1.07312 1.58709 1.22009 0.79309 1.09293 0.94937 1.21051 0.83111 0.75527 0.91741 1.90726 1.56368 1.49889 1.47073 1.45872 1.06375 1.74097 1.09094 1.21191 0.95310 0.93623 0.81276 1.21104 0.96854 0.85285 0.94037 1.42399 1.64850 1.01048 1.30378 1.18925 1.22249 0.84289 1.11241 0.94372 1.25584 1.02681 0.94176 1.02942 1.69926 1.49008 0.97813 1.46881 0.85284 0.78764 0.78169 0.78728 1.20860 1.22120 1.16257 1.22666 0.91039 0.98427 1.03748 1.22485 0.99002 0.93261 1.00128 1.22387 0.93955 0.99173 1.00239 1.22308 0.98425 0.94690 0.99709 1.17470 0.90288 0.82436 0.78664 1.90871 1.70164 1.31804 1.56606 1.21932 0.91526 1.00712 1.16607 0.88097 0.89241 0.90480 0.80767 0.79996 0.84560 0.82363 0.74947 0.95999 0.96904 0.79559 0.93298 0.90366 0.89563 0.90361 0.89299 0.90630 0.90922 0.93040 0.93177 0.83518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 10.03 71.23 0.71 -0.81 16 2 C 0.03 0.66 5.89 -19.82 -0.12 0.55 16 3 C -0.23 -4.51 9.71 22.08 0.21 -4.29 16 4 C 0.14 3.07 10.28 83.42 0.86 3.92 16 5 N -0.48 -13.11 2.07 -655.08 -1.36 -14.47 16 6 C 0.07 1.65 5.82 85.63 0.50 2.15 16 7 C 0.50 15.86 6.94 87.66 0.61 16.47 16 8 O -0.56 -23.40 13.73 -3.05 -0.04 -23.44 16 9 N -0.70 -19.14 4.54 -419.63 -1.91 -21.05 16 10 C 0.17 5.24 0.57 4.33 0.00 5.24 16 11 C 0.15 6.41 4.63 86.38 0.40 6.81 16 12 N -0.74 -34.00 5.05 -343.46 -1.73 -35.73 16 13 C -0.24 -13.61 10.47 84.04 0.88 -12.73 16 14 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 15 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 16 N -0.99 -62.59 13.97 21.65 0.30 -62.29 16 17 Si 0.96 42.62 27.99 68.60 1.92 44.54 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 19 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.24 -8.70 6.18 99.48 0.61 -8.08 16 21 C -0.12 -2.87 5.71 31.67 0.18 -2.69 16 22 C -0.11 -2.05 6.91 31.88 0.22 -1.83 16 23 C -0.12 -2.63 6.83 31.67 0.22 -2.42 16 24 C -0.11 -3.38 5.23 31.32 0.16 -3.21 16 25 C 0.51 16.49 7.40 84.82 0.63 17.12 16 26 O -0.61 -23.90 16.64 -5.51 -0.09 -23.99 16 27 C -0.29 -7.70 9.65 22.40 0.22 -7.49 16 28 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 0.91 8.10 -2.39 -0.02 0.89 16 30 H 0.08 0.93 8.09 -2.38 -0.02 0.91 16 31 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.18 3.32 8.03 -2.91 -0.02 3.30 16 33 H 0.14 2.96 7.39 -2.39 -0.02 2.94 16 34 H 0.16 2.43 8.01 -2.39 -0.02 2.41 16 35 H 0.41 8.14 8.23 -92.71 -0.76 7.38 16 36 H 0.02 0.94 7.99 -2.39 -0.02 0.92 16 37 H 0.01 0.63 6.61 -2.39 -0.02 0.62 16 38 H 0.37 15.23 4.95 -92.70 -0.46 14.77 16 39 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 40 H 0.08 2.05 7.75 -2.39 -0.02 2.03 16 41 H 0.09 1.76 7.70 -2.39 -0.02 1.75 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.05 1.72 7.00 -2.39 -0.02 1.71 16 47 H 0.05 1.70 7.67 -2.39 -0.02 1.68 16 48 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -86.94 386.66 2.90 -84.04 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: -0.34 Total: 38.72 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 6.15 Total: 13.65 kcal Atomic # 7 Polarization: -128.84 SS G_CDS: -4.70 Total: -133.53 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -0.13 Total: -47.43 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.92 Total: 44.54 kcal Total: -86.94 2.90 -84.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267845029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.058 kcal (2) G-P(sol) polarization free energy of solvation -86.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds