Wall clock time and date at job start Tue Mar 31 2020 17:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35923 * 116.99878 * 2 1 4 4 C 1.38851 * 120.40366 * 359.97438 * 3 2 1 5 5 N 1.31888 * 120.99922 * 180.02562 * 4 3 2 6 6 C 1.31683 * 121.94137 * 359.69858 * 5 4 3 7 7 C 1.39523 * 120.68736 * 0.58816 * 6 5 4 8 8 C 1.47855 * 120.52900 * 179.69631 * 7 6 5 9 9 O 1.21552 * 119.99583 * 132.15453 * 8 7 6 10 10 N 1.34771 * 120.00160 * 312.15659 * 8 7 6 11 11 C 1.47019 * 125.65068 * 4.98147 * 10 8 7 12 12 C 1.54325 * 107.27101 * 181.01504 * 11 10 8 13 13 C 1.55150 * 102.94266 * 22.19745 * 12 11 10 14 14 H 1.08996 * 111.00773 * 82.60921 * 13 12 11 15 15 C 1.53005 * 111.00136 * 206.42573 * 13 12 11 16 16 H 1.08997 * 109.47611 * 62.56798 * 15 13 12 17 17 C 1.53006 * 109.46754 * 182.57262 * 15 13 12 18 18 N 1.46504 * 109.47000 * 302.56732 * 15 13 12 19 19 C 1.36934 * 119.99740 * 155.00235 * 18 15 13 20 20 H 1.07995 * 120.00176 * 0.02562 * 19 18 15 21 21 C 1.38812 * 119.99560 * 180.02562 * 19 18 15 22 22 N 1.31614 * 120.00450 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99852 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46940 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47403 * 119.99899 * 23 21 19 26 26 H 1.48506 * 109.47386 * 240.00150 * 23 21 19 27 27 C 1.47426 * 125.64587 * 184.93212 * 10 8 7 28 28 C 1.38836 * 120.40812 * 180.02562 * 3 2 1 29 29 C 1.50698 * 120.87819 * 359.97438 * 28 3 2 30 30 H 1.08998 * 109.47300 * 59.99904 * 1 2 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47148 * 299.99712 * 1 2 3 33 33 H 1.07996 * 119.50239 * 359.97438 * 4 3 2 34 34 H 1.07995 * 119.65587 * 180.29570 * 6 5 4 35 35 H 1.09002 * 109.87922 * 61.60127 * 11 10 8 36 36 H 1.08993 * 110.01598 * 300.50605 * 11 10 8 37 37 H 1.09006 * 110.71689 * 263.82860 * 12 11 10 38 38 H 1.08997 * 110.71652 * 140.56321 * 12 11 10 39 39 H 1.09007 * 109.46695 * 175.00071 * 17 15 13 40 40 H 1.08991 * 109.47369 * 55.00192 * 17 15 13 41 41 H 1.08997 * 109.46674 * 294.99851 * 17 15 13 42 42 H 0.97003 * 119.99686 * 335.00447 * 18 15 13 43 43 H 0.97003 * 120.00217 * 180.02562 * 22 21 19 44 44 H 1.09003 * 110.37069 * 37.08014 * 27 10 8 45 45 H 1.08996 * 110.37008 * 274.75260 * 27 10 8 46 46 H 1.08999 * 109.47633 * 274.33789 * 29 28 3 47 47 H 1.09000 * 109.47098 * 34.33882 * 29 28 3 48 48 H 1.09002 * 109.47403 * 154.33361 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3809 -0.0005 5 7 1.8845 3.5622 -0.0010 6 6 3.1951 3.6893 0.0048 7 6 4.0197 2.5638 -0.0005 8 6 5.4910 2.7106 -0.0006 9 8 6.1662 2.0646 0.7767 10 7 6.0833 3.5607 -0.8625 11 6 5.3868 4.4744 -1.7799 12 6 6.4672 5.2275 -2.5843 13 6 7.6982 4.2893 -2.4761 14 1 7.6469 3.4906 -3.2160 15 6 9.0023 5.0776 -2.6138 16 1 9.0827 5.7929 -1.7954 17 6 10.1888 4.1127 -2.5664 18 7 9.0068 5.7947 -3.8914 19 6 9.7640 6.9260 -4.0387 20 1 10.3582 7.2895 -3.2134 21 6 9.7679 7.6058 -5.2490 22 7 9.0434 7.1632 -6.2548 23 14 10.8014 9.1487 -5.4504 24 1 11.5175 9.4339 -4.1810 25 1 11.7884 8.9447 -6.5410 26 1 9.9195 10.2946 -5.7888 27 6 7.5370 3.7291 -1.0408 28 6 3.4319 1.2937 -0.0005 29 6 4.2809 0.0486 -0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2196 2.3226 -0.0014 34 1 3.6364 4.6750 0.0090 35 1 4.7862 5.1841 -1.2109 36 1 4.7481 3.9077 -2.4572 37 1 6.6796 6.1963 -2.1319 38 1 6.1620 5.3449 -3.6240 39 1 11.1115 4.6622 -2.7531 40 1 10.0629 3.3442 -3.3290 41 1 10.2372 3.6446 -1.5833 42 1 8.4734 5.4680 -4.6328 43 1 9.0464 7.6380 -7.1006 44 1 8.0443 2.7686 -0.9494 45 1 7.9293 4.4372 -0.3110 46 1 4.4218 -0.2952 1.0242 47 1 3.7843 -0.7298 -0.5799 48 1 5.2507 0.2700 -0.4461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271500847.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:04 Heat of formation + Delta-G solvation = -22.040395 kcal Electronic energy + Delta-G solvation = -28742.065125 eV Core-core repulsion = 24797.800221 eV Total energy + Delta-G solvation = -3944.264904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.35043 -39.96956 -38.42688 -37.73245 -35.27879 -34.05731 -32.57737 -31.31353 -30.32866 -29.22975 -28.24751 -28.00662 -27.42009 -25.06447 -23.91260 -22.79031 -22.55032 -21.44623 -19.82485 -19.67987 -18.27895 -17.82008 -17.16364 -16.78708 -16.66518 -16.34322 -16.02828 -15.37962 -14.89005 -14.51351 -14.32457 -14.07587 -13.92072 -13.51598 -13.32285 -13.23528 -13.09897 -13.04263 -12.74225 -12.49059 -12.44881 -12.36905 -12.08951 -12.02621 -11.89502 -11.70893 -11.22809 -10.92099 -10.73474 -10.61301 -10.45938 -10.38946 -10.21052 -9.91173 -9.76379 -9.65546 -9.59234 -8.94257 -8.82778 -8.67232 -6.98582 -5.79131 -3.07470 0.41067 0.87251 2.40648 2.67395 2.98368 3.39770 3.41580 3.47969 3.49620 4.01483 4.13794 4.25452 4.40048 4.50123 4.56825 4.67323 4.73472 4.77635 4.92230 4.95244 5.04534 5.09747 5.20764 5.31001 5.40547 5.46121 5.50392 5.52226 5.65279 5.79776 5.84978 5.86987 5.88881 5.95172 6.04906 6.06818 6.18251 6.20985 6.38500 6.41666 6.59297 6.62348 6.73489 6.84810 7.08052 7.39223 7.51107 7.69143 7.97128 8.39382 9.51116 10.07917 10.42910 11.43505 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.002350 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.582585 B =11911.215045 C =12530.048079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.070 3.930 4 C 0.035 3.965 5 N -0.452 5.452 6 C 0.098 3.902 7 C -0.139 4.139 8 C 0.579 3.421 9 O -0.529 6.529 10 N -0.607 5.607 11 C 0.092 3.908 12 C -0.114 4.114 13 C -0.103 4.103 14 H 0.081 0.919 15 C 0.185 3.815 16 H 0.050 0.950 17 C -0.168 4.168 18 N -0.722 5.722 19 C -0.235 4.235 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.115 3.885 28 C -0.024 4.024 29 C -0.108 4.108 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.037 0.963 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.342 -13.537 12.651 25.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.022 3.978 4 C -0.122 4.122 5 N -0.161 5.161 6 C -0.061 4.061 7 C -0.144 4.144 8 C 0.366 3.634 9 O -0.406 6.406 10 N -0.340 5.340 11 C -0.030 4.030 12 C -0.152 4.152 13 C -0.123 4.123 14 H 0.099 0.901 15 C 0.075 3.925 16 H 0.068 0.932 17 C -0.228 4.228 18 N -0.363 5.363 19 C -0.366 4.366 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.007 4.007 28 C -0.033 4.033 29 C -0.164 4.164 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.179 0.821 34 H 0.183 0.817 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.093 0.907 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.351 -13.239 13.130 25.470 hybrid contribution 0.537 0.229 -0.546 0.799 sum -16.814 -13.010 12.584 24.705 Atomic orbital electron populations 1.23158 0.77831 1.04565 1.01659 1.86095 1.21646 1.25508 1.88560 1.19700 0.92161 0.86098 0.99827 1.23067 1.00709 0.87078 1.01346 1.67567 1.11783 1.25912 1.10868 1.22983 0.88476 0.98352 0.96260 1.20699 0.94732 0.93900 1.05110 1.17534 0.86305 0.79209 0.80337 1.90805 1.64918 1.46188 1.38731 1.48475 1.08551 1.38802 1.38159 1.22375 0.96388 0.92145 0.92124 1.22573 0.93043 0.98621 1.00950 1.22701 0.96584 0.98182 0.94811 0.90101 1.20135 0.89837 0.91834 0.90733 0.93200 1.22491 1.01112 0.99991 0.99187 1.42371 1.55348 1.29062 1.09523 1.19257 1.19597 1.00840 0.96925 0.91158 1.24716 1.00515 0.99470 0.96253 1.69660 1.44104 1.41284 1.03064 0.86159 0.79619 0.83193 0.77468 1.20590 1.21968 1.21931 1.22372 0.79347 1.01585 0.97397 1.19683 0.90923 0.95485 0.97195 1.20711 0.98775 0.93354 1.03586 0.92251 0.87714 0.92314 0.82094 0.81675 0.91261 0.91448 0.89860 0.89332 0.92532 0.93591 0.94391 0.78289 0.93608 0.90370 0.90883 0.89843 0.90670 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.09 16 2 O -0.31 -2.67 9.75 -19.50 -0.19 -2.86 16 3 C 0.07 0.71 6.68 -39.13 -0.26 0.45 16 4 C 0.04 0.34 10.21 -17.30 -0.18 0.16 16 5 N -0.45 -5.15 10.34 -12.80 -0.13 -5.28 16 6 C 0.10 1.12 9.71 -17.14 -0.17 0.95 16 7 C -0.14 -1.73 5.42 -104.84 -0.57 -2.30 16 8 C 0.58 8.17 6.59 -12.33 -0.08 8.09 16 9 O -0.53 -8.87 15.90 5.32 0.08 -8.78 16 10 N -0.61 -8.03 3.33 -171.63 -0.57 -8.60 16 11 C 0.09 1.09 5.66 -3.07 -0.02 1.07 16 12 C -0.11 -1.60 6.02 -24.90 -0.15 -1.75 16 13 C -0.10 -1.53 2.61 -88.47 -0.23 -1.77 16 14 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 15 C 0.18 3.36 2.44 -67.92 -0.17 3.19 16 16 H 0.05 0.93 7.96 -51.93 -0.41 0.52 16 17 C -0.17 -2.88 9.31 37.16 0.35 -2.54 16 18 N -0.72 -16.74 4.71 -53.42 -0.25 -16.99 16 19 C -0.23 -6.20 9.93 -15.06 -0.15 -6.35 16 20 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -27.20 13.06 55.49 0.72 -26.47 16 23 Si 0.90 21.88 29.55 -169.99 -5.02 16.85 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 C 0.12 1.58 5.81 -2.53 -0.01 1.57 16 28 C -0.02 -0.28 5.96 -103.76 -0.62 -0.90 16 29 C -0.11 -1.18 8.98 36.00 0.32 -0.86 16 30 H 0.06 0.21 7.67 -51.93 -0.40 -0.19 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.20 7.68 -51.93 -0.40 -0.20 16 33 H 0.16 1.04 6.30 -52.49 -0.33 0.71 16 34 H 0.17 1.64 5.98 -52.49 -0.31 1.33 16 35 H 0.07 0.71 6.03 -51.93 -0.31 0.39 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 38 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.04 0.55 7.80 -51.93 -0.41 0.15 16 42 H 0.38 9.50 7.80 -40.82 -0.32 9.18 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 45 H 0.07 1.00 7.94 -51.93 -0.41 0.58 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.07 0.72 7.75 -51.93 -0.40 0.31 16 48 H 0.08 0.92 6.56 -51.93 -0.34 0.58 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -31.84 387.33 -7.95 -39.79 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.39 Total: 6.86 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.03 Total: -0.35 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.23 Total: -57.35 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.11 Total: -11.64 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.84 -7.95 -39.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271500847.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.746 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds