Wall clock time and date at job start Tue Mar 31 2020 17:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35923 * 116.99878 * 2 1 4 4 C 1.38851 * 120.40366 * 359.97438 * 3 2 1 5 5 N 1.31888 * 120.99922 * 180.02562 * 4 3 2 6 6 C 1.31683 * 121.94137 * 359.69858 * 5 4 3 7 7 C 1.39523 * 120.68736 * 0.58816 * 6 5 4 8 8 C 1.47855 * 120.52900 * 179.69631 * 7 6 5 9 9 O 1.21552 * 119.99583 * 132.15453 * 8 7 6 10 10 N 1.34771 * 120.00160 * 312.15659 * 8 7 6 11 11 C 1.47019 * 125.65068 * 4.98147 * 10 8 7 12 12 C 1.54325 * 107.27101 * 181.01504 * 11 10 8 13 13 C 1.55150 * 102.94266 * 22.19745 * 12 11 10 14 14 H 1.08996 * 111.00773 * 82.60921 * 13 12 11 15 15 C 1.53005 * 111.00136 * 206.42573 * 13 12 11 16 16 H 1.08997 * 109.47611 * 62.56798 * 15 13 12 17 17 C 1.53006 * 109.46754 * 182.57262 * 15 13 12 18 18 N 1.46504 * 109.47000 * 302.56732 * 15 13 12 19 19 C 1.36934 * 119.99740 * 155.00235 * 18 15 13 20 20 H 1.07995 * 120.00176 * 0.02562 * 19 18 15 21 21 C 1.38812 * 119.99560 * 180.02562 * 19 18 15 22 22 N 1.31614 * 120.00450 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99852 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46940 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47403 * 119.99899 * 23 21 19 26 26 H 1.48506 * 109.47386 * 240.00150 * 23 21 19 27 27 C 1.47426 * 125.64587 * 184.93212 * 10 8 7 28 28 C 1.38836 * 120.40812 * 180.02562 * 3 2 1 29 29 C 1.50698 * 120.87819 * 359.97438 * 28 3 2 30 30 H 1.08998 * 109.47300 * 59.99904 * 1 2 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47148 * 299.99712 * 1 2 3 33 33 H 1.07996 * 119.50239 * 359.97438 * 4 3 2 34 34 H 1.07995 * 119.65587 * 180.29570 * 6 5 4 35 35 H 1.09002 * 109.87922 * 61.60127 * 11 10 8 36 36 H 1.08993 * 110.01598 * 300.50605 * 11 10 8 37 37 H 1.09006 * 110.71689 * 263.82860 * 12 11 10 38 38 H 1.08997 * 110.71652 * 140.56321 * 12 11 10 39 39 H 1.09007 * 109.46695 * 175.00071 * 17 15 13 40 40 H 1.08991 * 109.47369 * 55.00192 * 17 15 13 41 41 H 1.08997 * 109.46674 * 294.99851 * 17 15 13 42 42 H 0.97003 * 119.99686 * 335.00447 * 18 15 13 43 43 H 0.97003 * 120.00217 * 180.02562 * 22 21 19 44 44 H 1.09003 * 110.37069 * 37.08014 * 27 10 8 45 45 H 1.08996 * 110.37008 * 274.75260 * 27 10 8 46 46 H 1.08999 * 109.47633 * 274.33789 * 29 28 3 47 47 H 1.09000 * 109.47098 * 34.33882 * 29 28 3 48 48 H 1.09002 * 109.47403 * 154.33361 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3809 -0.0005 5 7 1.8845 3.5622 -0.0010 6 6 3.1951 3.6893 0.0048 7 6 4.0197 2.5638 -0.0005 8 6 5.4910 2.7106 -0.0006 9 8 6.1662 2.0646 0.7767 10 7 6.0833 3.5607 -0.8625 11 6 5.3868 4.4744 -1.7799 12 6 6.4672 5.2275 -2.5843 13 6 7.6982 4.2893 -2.4761 14 1 7.6469 3.4906 -3.2160 15 6 9.0023 5.0776 -2.6138 16 1 9.0827 5.7929 -1.7954 17 6 10.1888 4.1127 -2.5664 18 7 9.0068 5.7947 -3.8914 19 6 9.7640 6.9260 -4.0387 20 1 10.3582 7.2895 -3.2134 21 6 9.7679 7.6058 -5.2490 22 7 9.0434 7.1632 -6.2548 23 14 10.8014 9.1487 -5.4504 24 1 11.5175 9.4339 -4.1810 25 1 11.7884 8.9447 -6.5410 26 1 9.9195 10.2946 -5.7888 27 6 7.5370 3.7291 -1.0408 28 6 3.4319 1.2937 -0.0005 29 6 4.2809 0.0486 -0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2196 2.3226 -0.0014 34 1 3.6364 4.6750 0.0090 35 1 4.7862 5.1841 -1.2109 36 1 4.7481 3.9077 -2.4572 37 1 6.6796 6.1963 -2.1319 38 1 6.1620 5.3449 -3.6240 39 1 11.1115 4.6622 -2.7531 40 1 10.0629 3.3442 -3.3290 41 1 10.2372 3.6446 -1.5833 42 1 8.4734 5.4680 -4.6328 43 1 9.0464 7.6380 -7.1006 44 1 8.0443 2.7686 -0.9494 45 1 7.9293 4.4372 -0.3110 46 1 4.4218 -0.2952 1.0242 47 1 3.7843 -0.7298 -0.5799 48 1 5.2507 0.2700 -0.4461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271500847.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:03 Heat of formation + Delta-G solvation = -42.422473 kcal Electronic energy + Delta-G solvation = -28742.948958 eV Core-core repulsion = 24797.800221 eV Total energy + Delta-G solvation = -3945.148737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.19582 -40.95734 -39.31441 -38.79582 -36.82184 -34.89920 -34.28634 -32.47668 -31.41910 -30.76300 -29.16383 -28.68011 -28.46599 -26.36911 -25.41115 -23.81214 -23.46895 -22.75816 -21.08559 -20.77353 -19.27747 -18.95637 -18.61142 -17.75098 -17.47280 -17.27959 -16.91792 -16.51465 -16.31525 -15.70120 -15.45223 -15.10292 -15.06621 -14.81728 -14.66246 -14.31021 -14.04590 -13.93972 -13.86798 -13.84658 -13.64451 -13.33313 -13.19368 -12.95614 -12.89518 -12.79040 -12.73563 -12.37903 -12.29077 -12.11412 -12.00553 -11.63311 -11.52507 -11.49973 -11.34647 -10.91541 -10.65311 -10.50298 -9.76138 -9.54425 -8.94863 -7.89010 -5.15407 -0.43082 0.06131 1.41924 1.49579 1.50908 1.59542 1.74862 2.23060 2.56465 2.59691 3.17337 3.38469 3.41488 3.45052 3.53632 3.62345 3.64660 3.84827 3.95858 4.13046 4.23277 4.27564 4.35755 4.36898 4.41071 4.43975 4.52171 4.59759 4.61917 4.62335 4.69530 4.75294 4.78346 4.88408 4.97173 5.00324 5.05196 5.07825 5.14077 5.21020 5.29520 5.34352 5.40326 5.58293 5.63635 6.12381 6.31740 6.34416 6.70410 6.89524 7.40758 8.16916 8.40368 9.34453 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.002350 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.582585 B =11911.215045 C =12530.048079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.074 3.926 4 C 0.041 3.959 5 N -0.465 5.465 6 C 0.095 3.905 7 C -0.153 4.153 8 C 0.582 3.418 9 O -0.561 6.561 10 N -0.606 5.606 11 C 0.101 3.899 12 C -0.110 4.110 13 C -0.093 4.093 14 H 0.078 0.922 15 C 0.182 3.818 16 H 0.049 0.951 17 C -0.160 4.160 18 N -0.730 5.730 19 C -0.227 4.227 20 H 0.074 0.926 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.963 3.037 24 H -0.268 1.268 25 H -0.299 1.299 26 H -0.295 1.295 27 C 0.121 3.879 28 C -0.042 4.042 29 C -0.102 4.102 30 H 0.071 0.929 31 H 0.124 0.876 32 H 0.071 0.929 33 H 0.194 0.806 34 H 0.176 0.824 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.043 0.957 41 H 0.067 0.933 42 H 0.374 0.626 43 H 0.248 0.752 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.031 -13.963 13.837 27.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.230 6.230 3 C 0.026 3.974 4 C -0.116 4.116 5 N -0.174 5.174 6 C -0.063 4.063 7 C -0.158 4.158 8 C 0.370 3.630 9 O -0.441 6.441 10 N -0.338 5.338 11 C -0.021 4.021 12 C -0.148 4.148 13 C -0.113 4.113 14 H 0.097 0.903 15 C 0.073 3.927 16 H 0.067 0.933 17 C -0.220 4.220 18 N -0.370 5.370 19 C -0.359 4.359 20 H 0.092 0.908 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.794 3.206 24 H -0.193 1.193 25 H -0.226 1.226 26 H -0.223 1.223 27 C -0.001 4.001 28 C -0.051 4.051 29 C -0.158 4.158 30 H 0.090 0.910 31 H 0.142 0.858 32 H 0.090 0.910 33 H 0.211 0.789 34 H 0.193 0.807 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.206 0.794 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.100 0.900 47 H 0.105 0.895 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.039 -13.674 14.356 27.487 hybrid contribution 0.965 0.247 -0.843 1.305 sum -18.074 -13.427 13.513 26.259 Atomic orbital electron populations 1.23518 0.75516 1.06382 1.02888 1.86094 1.24008 1.24742 1.88159 1.19696 0.91666 0.86997 0.99024 1.23575 1.02154 0.86297 0.99611 1.67632 1.11623 1.26785 1.11406 1.23100 0.88593 0.98429 0.96152 1.20577 0.93587 0.94730 1.06890 1.17775 0.87003 0.78518 0.79713 1.90781 1.65826 1.47426 1.40080 1.48467 1.08341 1.38834 1.38134 1.22364 0.95590 0.92158 0.92023 1.22471 0.93439 0.98300 1.00600 1.22486 0.95272 0.97856 0.95712 0.90340 1.20307 0.91950 0.92028 0.88374 0.93319 1.22364 0.99359 0.99413 1.00844 1.42516 1.54722 1.28782 1.10975 1.19583 1.18596 1.01132 0.96611 0.90836 1.25412 1.02382 1.02490 0.96418 1.69798 1.46122 1.42649 1.03325 0.85212 0.78006 0.79960 0.77440 1.19255 1.22648 1.22293 1.22245 0.80015 1.01530 0.96336 1.19863 0.92038 0.95367 0.97856 1.20638 0.98021 0.93663 1.03492 0.91005 0.85797 0.90995 0.78929 0.80677 0.89105 0.90535 0.90757 0.90523 0.94512 0.93811 0.91457 0.79437 0.94275 0.90418 0.90474 0.90041 0.89471 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.82 113.37 1.11 1.18 16 2 O -0.32 -4.80 9.75 -92.68 -0.90 -5.71 16 3 C 0.07 1.37 6.68 22.56 0.15 1.52 16 4 C 0.04 0.68 10.21 84.83 0.87 1.55 16 5 N -0.47 -9.59 10.34 -194.40 -2.01 -11.60 16 6 C 0.10 2.02 9.71 85.03 0.83 2.85 16 7 C -0.15 -3.65 5.42 -20.01 -0.11 -3.76 16 8 C 0.58 16.08 6.59 86.79 0.57 16.65 16 9 O -0.56 -18.80 15.90 -3.88 -0.06 -18.86 16 10 N -0.61 -15.41 3.33 -815.19 -2.71 -18.12 16 11 C 0.10 2.23 5.66 86.73 0.49 2.72 16 12 C -0.11 -3.04 6.02 31.78 0.19 -2.85 16 13 C -0.09 -2.73 2.61 -9.40 -0.02 -2.76 16 14 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 15 C 0.18 6.53 2.44 44.99 0.11 6.64 16 16 H 0.05 1.78 7.96 -2.39 -0.02 1.76 16 17 C -0.16 -5.37 9.31 71.98 0.67 -4.70 16 18 N -0.73 -34.05 4.71 -322.92 -1.52 -35.57 16 19 C -0.23 -11.98 9.93 84.03 0.83 -11.15 16 20 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 21 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 22 N -0.97 -57.38 13.06 21.65 0.28 -57.10 16 23 Si 0.96 45.28 29.55 68.60 2.03 47.31 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 26 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 27 C 0.12 3.21 5.81 86.86 0.50 3.71 16 28 C -0.04 -0.95 5.96 -19.31 -0.12 -1.07 16 29 C -0.10 -2.19 8.98 71.24 0.64 -1.55 16 30 H 0.07 0.26 7.67 -2.39 -0.02 0.25 16 31 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.07 0.25 7.68 -2.39 -0.02 0.23 16 33 H 0.19 1.78 6.30 -2.91 -0.02 1.76 16 34 H 0.18 3.16 5.98 -2.91 -0.02 3.14 16 35 H 0.09 1.67 6.03 -2.39 -0.01 1.65 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 2.19 8.04 -2.38 -0.02 2.17 16 38 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.85 7.80 -2.39 -0.02 1.84 16 42 H 0.37 18.82 7.80 -92.71 -0.72 18.10 16 43 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.08 2.09 8.09 -2.39 -0.02 2.07 16 45 H 0.08 2.00 7.94 -2.39 -0.02 1.98 16 46 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.09 1.59 7.75 -2.39 -0.02 1.57 16 48 H 0.06 1.45 6.56 -2.39 -0.02 1.44 16 Total: -1.00 -68.51 387.33 2.54 -65.96 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.25 Total: 28.39 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 7.19 Total: 5.29 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -5.96 Total: -122.38 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.97 Total: -24.57 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -68.51 2.54 -65.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271500847.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.540 kcal (2) G-P(sol) polarization free energy of solvation -68.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds