Wall clock time and date at job start Tue Mar 31 2020 17:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35919 * 117.00114 * 2 1 4 4 C 1.38854 * 120.40845 * 359.97438 * 3 2 1 5 5 N 1.31870 * 120.99941 * 179.97438 * 4 3 2 6 6 C 1.31684 * 121.94354 * 0.02562 * 5 4 3 7 7 C 1.39525 * 120.69249 * 0.02562 * 6 5 4 8 8 C 1.47847 * 120.53048 * 179.97438 * 7 6 5 9 9 O 1.21555 * 120.00096 * 133.93704 * 8 7 6 10 10 N 1.34782 * 120.00167 * 313.93056 * 8 7 6 11 11 C 1.47023 * 125.64506 * 354.86281 * 10 8 7 12 12 C 1.54320 * 107.26830 * 178.91810 * 11 10 8 13 13 C 1.55276 * 103.00925 * 337.88117 * 12 11 10 14 14 H 1.08996 * 110.95743 * 277.33950 * 13 12 11 15 15 C 1.53002 * 111.09758 * 153.45055 * 13 12 11 16 16 H 1.08999 * 109.47110 * 306.36071 * 15 13 12 17 17 C 1.52999 * 109.47104 * 66.36288 * 15 13 12 18 18 N 1.46501 * 109.46819 * 186.36011 * 15 13 12 19 19 C 1.36938 * 120.00164 * 154.99929 * 18 15 13 20 20 H 1.08003 * 119.99728 * 359.97438 * 19 18 15 21 21 C 1.38810 * 120.00043 * 180.02562 * 19 18 15 22 22 N 1.31615 * 120.00079 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99528 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46971 * 60.00279 * 23 21 19 25 25 H 1.48510 * 109.47011 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47466 * 299.99726 * 23 21 19 27 27 C 1.47415 * 125.65046 * 174.83228 * 10 8 7 28 28 C 1.38848 * 120.40197 * 180.23894 * 3 2 1 29 29 C 1.50697 * 120.88340 * 0.02562 * 28 3 2 30 30 H 1.09002 * 109.47494 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46923 * 300.00240 * 1 2 3 32 32 H 1.09000 * 109.47393 * 59.99781 * 1 2 3 33 33 H 1.08002 * 119.49430 * 359.96345 * 4 3 2 34 34 H 1.08001 * 119.65111 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.88015 * 298.32875 * 11 10 8 36 36 H 1.08993 * 109.88751 * 59.49706 * 11 10 8 37 37 H 1.08998 * 110.72384 * 96.17147 * 12 11 10 38 38 H 1.09003 * 110.71933 * 219.26197 * 12 11 10 39 39 H 1.09007 * 109.46849 * 179.97438 * 17 15 13 40 40 H 1.09001 * 109.47265 * 299.99760 * 17 15 13 41 41 H 1.08999 * 109.47314 * 59.99908 * 17 15 13 42 42 H 0.97002 * 120.00248 * 335.00311 * 18 15 13 43 43 H 0.97005 * 119.99472 * 180.02562 * 22 21 19 44 44 H 1.09007 * 110.36950 * 322.99322 * 27 10 8 45 45 H 1.08999 * 110.36994 * 85.20384 * 27 10 8 46 46 H 1.09002 * 109.47023 * 274.67271 * 29 28 3 47 47 H 1.08999 * 109.47042 * 34.67124 * 29 28 3 48 48 H 1.08995 * 109.46987 * 154.67298 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8847 3.5620 0.0000 6 6 3.1954 3.6890 0.0005 7 6 4.0199 2.5635 0.0000 8 6 5.4911 2.7102 0.0000 9 8 6.1684 2.0434 0.7578 10 7 6.0814 3.5832 -0.8403 11 6 5.3978 4.3703 -1.8770 12 6 6.4658 5.2448 -2.5670 13 6 7.5960 5.3192 -1.5048 14 1 7.3855 6.0914 -0.7650 15 6 8.9571 5.5510 -2.1642 16 1 9.1243 4.7924 -2.9288 17 6 8.9819 6.9386 -2.8084 18 7 10.0116 5.4641 -1.1511 19 6 11.2872 5.1268 -1.5176 20 1 11.5157 4.9244 -2.5537 21 6 12.2863 5.0438 -0.5575 22 7 12.0075 5.2889 0.7052 23 14 14.0261 4.5830 -1.0577 24 1 14.5430 5.5812 -2.0281 25 1 14.8981 4.5643 0.1443 26 1 14.0206 3.2379 -1.6866 27 6 7.5190 3.9076 -0.8716 28 6 3.4321 1.2934 -0.0050 29 6 4.2809 0.0483 -0.0111 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 0.2197 2.3226 -0.0016 34 1 3.6367 4.6747 0.0013 35 1 4.9377 3.7030 -2.6059 36 1 4.6379 5.0043 -1.4204 37 1 6.8259 4.7669 -3.4780 38 1 6.0702 6.2370 -2.7842 39 1 9.9518 7.1039 -3.2778 40 1 8.1973 7.0034 -3.5622 41 1 8.8147 7.6972 -2.0438 42 1 9.8064 5.6453 -0.2205 43 1 12.7059 5.2313 1.3760 44 1 7.9267 3.9225 0.1393 45 1 8.0574 3.1862 -1.4862 46 1 4.4203 -0.3015 1.0119 47 1 3.7851 -0.7266 -0.5956 48 1 5.2514 0.2723 -0.4538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271500848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:07 Heat of formation + Delta-G solvation = -21.016319 kcal Electronic energy + Delta-G solvation = -28838.406887 eV Core-core repulsion = 24894.186390 eV Total energy + Delta-G solvation = -3944.220497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.31020 -39.89551 -38.40436 -37.67568 -35.23707 -34.00620 -32.58436 -31.27731 -30.36554 -28.66336 -28.32123 -28.09242 -27.76187 -24.73523 -23.91602 -22.87366 -22.52659 -21.48268 -19.73645 -19.65750 -18.25832 -17.78558 -17.12717 -16.75553 -16.47048 -16.24097 -16.04689 -15.38166 -14.83459 -14.55515 -14.31895 -14.07726 -13.80345 -13.66924 -13.27509 -13.13705 -13.04436 -12.98468 -12.75363 -12.58362 -12.38589 -12.19086 -11.99897 -11.97234 -11.87565 -11.58420 -11.34586 -10.87279 -10.75664 -10.62576 -10.55424 -10.34661 -10.23183 -9.90902 -9.72079 -9.61010 -9.53068 -8.89535 -8.80760 -8.54396 -6.95087 -5.73958 -3.03154 0.43995 0.89558 2.51341 2.73047 3.06331 3.43515 3.45875 3.50415 3.51479 4.04001 4.17342 4.28874 4.44343 4.52426 4.60565 4.66491 4.67855 4.76061 4.91564 4.96536 5.01269 5.07973 5.21509 5.34464 5.44477 5.51374 5.53248 5.56575 5.65387 5.84358 5.87794 5.88663 5.92507 5.94434 6.05429 6.12711 6.16487 6.29288 6.35971 6.39173 6.56039 6.63015 6.75849 6.85044 7.07496 7.50182 7.53915 7.71446 8.10916 8.44030 9.55372 10.11906 10.46277 11.48427 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020362 B = 0.002517 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.808544 B =11123.497014 C =11990.567917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.069 3.931 4 C 0.034 3.966 5 N -0.454 5.454 6 C 0.098 3.902 7 C -0.138 4.138 8 C 0.576 3.424 9 O -0.520 6.520 10 N -0.611 5.611 11 C 0.096 3.904 12 C -0.124 4.124 13 C -0.102 4.102 14 H 0.082 0.918 15 C 0.185 3.815 16 H 0.049 0.951 17 C -0.164 4.164 18 N -0.724 5.724 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.286 1.286 27 C 0.121 3.879 28 C -0.023 4.023 29 C -0.109 4.109 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.037 0.963 41 H 0.046 0.954 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.940 -6.116 -5.265 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.022 3.978 4 C -0.123 4.123 5 N -0.163 5.163 6 C -0.060 4.060 7 C -0.143 4.143 8 C 0.362 3.638 9 O -0.396 6.396 10 N -0.344 5.344 11 C -0.027 4.027 12 C -0.162 4.162 13 C -0.122 4.122 14 H 0.100 0.900 15 C 0.075 3.925 16 H 0.067 0.933 17 C -0.224 4.224 18 N -0.366 5.366 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.213 1.213 27 C 0.000 4.000 28 C -0.032 4.032 29 C -0.166 4.166 30 H 0.123 0.877 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.178 0.822 34 H 0.183 0.817 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.103 0.897 47 H 0.092 0.908 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -25.875 -6.072 -4.872 27.021 hybrid contribution 1.083 -0.637 0.087 1.259 sum -24.793 -6.710 -4.785 26.127 Atomic orbital electron populations 1.23151 0.77899 1.04535 1.01603 1.86100 1.21587 1.25540 1.88560 1.19714 0.92170 0.86073 0.99858 1.23038 1.00643 0.87091 1.01573 1.67551 1.11784 1.25928 1.11027 1.22929 0.88405 0.98298 0.96384 1.20766 0.94872 0.93824 1.04809 1.17528 0.86165 0.79625 0.80449 1.90848 1.64618 1.44160 1.39981 1.48502 1.10368 1.41415 1.34131 1.22232 0.96119 0.94239 0.90146 1.22704 0.95098 0.99760 0.98671 1.22706 0.96062 0.96139 0.97263 0.89970 1.20150 0.85908 0.94839 0.91637 0.93300 1.22440 1.00497 0.99758 0.99706 1.42410 1.05136 1.83230 1.05785 1.19144 0.85648 1.39004 0.93225 0.91296 1.24728 0.98090 1.02594 0.95398 1.69645 1.32664 1.55701 0.99917 0.86304 0.84815 0.78272 0.76988 1.21361 1.21752 1.21295 1.22308 0.78617 0.96013 1.03064 1.19733 0.90897 0.95602 0.96999 1.20728 0.98850 0.93251 1.03723 0.87740 0.92314 0.92329 0.82151 0.81709 0.91611 0.91273 0.90302 0.89879 0.92765 0.94396 0.93489 0.78249 0.93459 0.89600 0.90772 0.89742 0.90751 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.10 16 2 O -0.31 -2.74 9.75 -19.48 -0.19 -2.93 16 3 C 0.07 0.73 6.68 -39.13 -0.26 0.46 16 4 C 0.03 0.33 10.21 -17.31 -0.18 0.15 16 5 N -0.45 -5.13 10.34 -12.80 -0.13 -5.26 16 6 C 0.10 1.14 9.58 -17.14 -0.16 0.97 16 7 C -0.14 -1.79 5.36 -104.84 -0.56 -2.36 16 8 C 0.58 8.98 6.61 -12.33 -0.08 8.89 16 9 O -0.52 -10.03 15.80 5.32 0.08 -9.95 16 10 N -0.61 -8.73 3.33 -171.63 -0.57 -9.30 16 11 C 0.10 1.03 6.02 -3.07 -0.02 1.01 16 12 C -0.12 -1.36 5.60 -24.83 -0.14 -1.50 16 13 C -0.10 -1.51 2.63 -88.41 -0.23 -1.75 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 15 C 0.18 3.37 2.41 -67.93 -0.16 3.21 16 16 H 0.05 0.92 8.05 -51.93 -0.42 0.50 16 17 C -0.16 -2.72 9.34 37.16 0.35 -2.37 16 18 N -0.72 -17.33 4.82 -53.42 -0.26 -17.59 16 19 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 20 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 23 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 27 C 0.12 2.02 6.06 -2.53 -0.02 2.01 16 28 C -0.02 -0.29 5.96 -103.76 -0.62 -0.91 16 29 C -0.11 -1.30 8.96 36.00 0.32 -0.97 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.21 7.68 -51.93 -0.40 -0.18 16 32 H 0.06 0.20 7.67 -51.93 -0.40 -0.20 16 33 H 0.16 1.03 6.30 -52.49 -0.33 0.70 16 34 H 0.17 1.65 6.29 -52.49 -0.33 1.32 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.63 5.71 -51.93 -0.30 0.34 16 37 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.04 0.50 7.51 -51.93 -0.39 0.11 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.38 9.90 7.80 -40.82 -0.32 9.59 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.09 1.69 8.09 -51.92 -0.42 1.27 16 45 H 0.07 1.33 8.03 -51.93 -0.42 0.91 16 46 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.07 0.75 7.76 -51.93 -0.40 0.35 16 48 H 0.08 1.04 6.51 -51.93 -0.34 0.70 16 LS Contribution 387.21 15.07 5.84 5.84 Total: -1.00 -33.21 387.21 -7.93 -41.14 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -7.38 Total: 7.11 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -1.02 Total: 0.89 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -0.24 Total: -59.49 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.11 Total: -12.88 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.21 -7.93 -41.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271500848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.124 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds