Wall clock time and date at job start Tue Mar 31 2020 17:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35919 * 117.00114 * 2 1 4 4 C 1.38854 * 120.40845 * 359.97438 * 3 2 1 5 5 N 1.31870 * 120.99941 * 179.97438 * 4 3 2 6 6 C 1.31684 * 121.94354 * 0.02562 * 5 4 3 7 7 C 1.39525 * 120.69249 * 0.02562 * 6 5 4 8 8 C 1.47847 * 120.53048 * 179.97438 * 7 6 5 9 9 O 1.21555 * 120.00096 * 133.93704 * 8 7 6 10 10 N 1.34782 * 120.00167 * 313.93056 * 8 7 6 11 11 C 1.47023 * 125.64506 * 354.86281 * 10 8 7 12 12 C 1.54320 * 107.26830 * 178.91810 * 11 10 8 13 13 C 1.55276 * 103.00925 * 337.88117 * 12 11 10 14 14 H 1.08996 * 110.95743 * 277.33950 * 13 12 11 15 15 C 1.53002 * 111.09758 * 153.45055 * 13 12 11 16 16 H 1.08999 * 109.47110 * 306.36071 * 15 13 12 17 17 C 1.52999 * 109.47104 * 66.36288 * 15 13 12 18 18 N 1.46501 * 109.46819 * 186.36011 * 15 13 12 19 19 C 1.36938 * 120.00164 * 154.99929 * 18 15 13 20 20 H 1.08003 * 119.99728 * 359.97438 * 19 18 15 21 21 C 1.38810 * 120.00043 * 180.02562 * 19 18 15 22 22 N 1.31615 * 120.00079 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99528 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46971 * 60.00279 * 23 21 19 25 25 H 1.48510 * 109.47011 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47466 * 299.99726 * 23 21 19 27 27 C 1.47415 * 125.65046 * 174.83228 * 10 8 7 28 28 C 1.38848 * 120.40197 * 180.23894 * 3 2 1 29 29 C 1.50697 * 120.88340 * 0.02562 * 28 3 2 30 30 H 1.09002 * 109.47494 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46923 * 300.00240 * 1 2 3 32 32 H 1.09000 * 109.47393 * 59.99781 * 1 2 3 33 33 H 1.08002 * 119.49430 * 359.96345 * 4 3 2 34 34 H 1.08001 * 119.65111 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.88015 * 298.32875 * 11 10 8 36 36 H 1.08993 * 109.88751 * 59.49706 * 11 10 8 37 37 H 1.08998 * 110.72384 * 96.17147 * 12 11 10 38 38 H 1.09003 * 110.71933 * 219.26197 * 12 11 10 39 39 H 1.09007 * 109.46849 * 179.97438 * 17 15 13 40 40 H 1.09001 * 109.47265 * 299.99760 * 17 15 13 41 41 H 1.08999 * 109.47314 * 59.99908 * 17 15 13 42 42 H 0.97002 * 120.00248 * 335.00311 * 18 15 13 43 43 H 0.97005 * 119.99472 * 180.02562 * 22 21 19 44 44 H 1.09007 * 110.36950 * 322.99322 * 27 10 8 45 45 H 1.08999 * 110.36994 * 85.20384 * 27 10 8 46 46 H 1.09002 * 109.47023 * 274.67271 * 29 28 3 47 47 H 1.08999 * 109.47042 * 34.67124 * 29 28 3 48 48 H 1.08995 * 109.46987 * 154.67298 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8847 3.5620 0.0000 6 6 3.1954 3.6890 0.0005 7 6 4.0199 2.5635 0.0000 8 6 5.4911 2.7102 0.0000 9 8 6.1684 2.0434 0.7578 10 7 6.0814 3.5832 -0.8403 11 6 5.3978 4.3703 -1.8770 12 6 6.4658 5.2448 -2.5670 13 6 7.5960 5.3192 -1.5048 14 1 7.3855 6.0914 -0.7650 15 6 8.9571 5.5510 -2.1642 16 1 9.1243 4.7924 -2.9288 17 6 8.9819 6.9386 -2.8084 18 7 10.0116 5.4641 -1.1511 19 6 11.2872 5.1268 -1.5176 20 1 11.5157 4.9244 -2.5537 21 6 12.2863 5.0438 -0.5575 22 7 12.0075 5.2889 0.7052 23 14 14.0261 4.5830 -1.0577 24 1 14.5430 5.5812 -2.0281 25 1 14.8981 4.5643 0.1443 26 1 14.0206 3.2379 -1.6866 27 6 7.5190 3.9076 -0.8716 28 6 3.4321 1.2934 -0.0050 29 6 4.2809 0.0483 -0.0111 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 0.2197 2.3226 -0.0016 34 1 3.6367 4.6747 0.0013 35 1 4.9377 3.7030 -2.6059 36 1 4.6379 5.0043 -1.4204 37 1 6.8259 4.7669 -3.4780 38 1 6.0702 6.2370 -2.7842 39 1 9.9518 7.1039 -3.2778 40 1 8.1973 7.0034 -3.5622 41 1 8.8147 7.6972 -2.0438 42 1 9.8064 5.6453 -0.2205 43 1 12.7059 5.2313 1.3760 44 1 7.9267 3.9225 0.1393 45 1 8.0574 3.1862 -1.4862 46 1 4.4203 -0.3015 1.0119 47 1 3.7851 -0.7266 -0.5956 48 1 5.2514 0.2723 -0.4538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271500848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:06 Heat of formation + Delta-G solvation = -43.783383 kcal Electronic energy + Delta-G solvation = -28839.394141 eV Core-core repulsion = 24894.186390 eV Total energy + Delta-G solvation = -3945.207751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.19972 -40.94492 -39.31236 -38.80591 -36.82373 -34.90745 -34.33010 -32.49290 -31.56429 -30.03327 -29.63785 -28.88410 -28.46395 -25.98455 -25.61447 -23.83974 -23.44142 -22.80983 -21.06536 -20.75292 -19.35846 -18.88754 -18.60061 -17.58112 -17.57776 -17.20581 -16.91366 -16.59618 -16.40992 -15.63745 -15.48938 -15.26072 -15.10572 -14.82831 -14.58103 -14.19695 -14.01607 -13.97808 -13.95564 -13.84997 -13.58440 -13.32346 -13.08845 -12.99494 -12.84805 -12.75818 -12.60913 -12.38805 -12.32360 -12.24707 -12.02270 -11.73697 -11.52730 -11.45434 -11.33923 -10.91374 -10.66125 -10.51995 -9.76069 -9.53521 -8.96780 -7.90830 -5.18013 -0.44751 0.04930 1.45581 1.46656 1.49456 1.55097 1.73553 2.23695 2.55813 2.57794 3.20199 3.38101 3.40032 3.43351 3.54554 3.60875 3.68620 3.87160 3.95846 4.11193 4.19978 4.26771 4.36669 4.39355 4.42021 4.47720 4.56400 4.57921 4.59326 4.66560 4.69677 4.78843 4.88068 4.89140 4.95946 4.98428 5.04727 5.11665 5.13610 5.22710 5.28674 5.34101 5.43518 5.55331 5.68115 6.12979 6.31381 6.37276 6.69018 6.91643 7.37369 8.15789 8.36406 9.32597 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020362 B = 0.002517 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.808544 B =11123.497014 C =11990.567917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.319 6.319 3 C 0.076 3.924 4 C 0.045 3.955 5 N -0.461 5.461 6 C 0.101 3.899 7 C -0.150 4.150 8 C 0.573 3.427 9 O -0.572 6.572 10 N -0.608 5.608 11 C 0.093 3.907 12 C -0.111 4.111 13 C -0.092 4.092 14 H 0.082 0.918 15 C 0.179 3.821 16 H 0.046 0.954 17 C -0.153 4.153 18 N -0.738 5.738 19 C -0.230 4.230 20 H 0.076 0.924 21 C -0.080 4.080 22 N -0.971 5.971 23 Si 0.967 3.033 24 H -0.276 1.276 25 H -0.300 1.300 26 H -0.281 1.281 27 C 0.126 3.874 28 C -0.044 4.044 29 C -0.103 4.103 30 H 0.123 0.877 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.197 0.803 34 H 0.179 0.821 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.032 0.968 40 H 0.081 0.919 41 H 0.042 0.958 42 H 0.370 0.630 43 H 0.248 0.752 44 H 0.043 0.957 45 H 0.054 0.946 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.400 -5.502 -7.583 30.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.028 3.972 4 C -0.113 4.113 5 N -0.170 5.170 6 C -0.057 4.057 7 C -0.155 4.155 8 C 0.361 3.639 9 O -0.452 6.452 10 N -0.340 5.340 11 C -0.029 4.029 12 C -0.149 4.149 13 C -0.112 4.112 14 H 0.100 0.900 15 C 0.071 3.929 16 H 0.064 0.936 17 C -0.212 4.212 18 N -0.378 5.378 19 C -0.362 4.362 20 H 0.094 0.906 21 C -0.272 4.272 22 N -0.622 5.622 23 Si 0.797 3.203 24 H -0.202 1.202 25 H -0.227 1.227 26 H -0.207 1.207 27 C 0.004 3.996 28 C -0.052 4.052 29 C -0.159 4.159 30 H 0.141 0.859 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.214 0.786 34 H 0.195 0.805 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.135 0.865 39 H 0.051 0.949 40 H 0.100 0.900 41 H 0.061 0.939 42 H 0.202 0.798 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.094 0.906 47 H 0.109 0.891 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -29.389 -5.434 -7.278 30.761 hybrid contribution 1.973 -0.916 0.758 2.304 sum -27.417 -6.350 -6.519 28.888 Atomic orbital electron populations 1.23530 0.75415 1.06380 1.03000 1.86100 1.24108 1.24788 1.88139 1.19681 0.91412 0.87129 0.98998 1.23599 1.02188 0.86145 0.99371 1.67650 1.11315 1.26656 1.11358 1.23047 0.88501 0.98178 0.96005 1.20533 0.92942 0.94956 1.07107 1.18027 0.87346 0.78846 0.79665 1.90811 1.66038 1.46238 1.42127 1.48541 1.09438 1.41341 1.34644 1.22514 0.96295 0.94449 0.89598 1.22738 0.93058 1.01776 0.97300 1.22522 0.95802 0.94421 0.98412 0.90010 1.20422 0.85994 0.95955 0.90572 0.93609 1.22271 1.00933 0.97717 1.00323 1.42650 1.05637 1.83118 1.06365 1.19551 0.86901 1.36481 0.93313 0.90597 1.25506 1.01930 1.04192 0.95537 1.69814 1.33276 1.58256 1.00889 0.85301 0.80451 0.78245 0.76339 1.20232 1.22655 1.20722 1.22021 0.80179 0.97099 1.00334 1.19853 0.92181 0.95209 0.98006 1.20624 0.97985 0.94024 1.03270 0.85908 0.91048 0.90656 0.78600 0.80451 0.89847 0.88810 0.89415 0.86534 0.94857 0.90002 0.93894 0.79833 0.94341 0.93860 0.92777 0.90572 0.89121 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.82 113.37 1.11 1.17 16 2 O -0.32 -4.96 9.75 -92.63 -0.90 -5.86 16 3 C 0.08 1.43 6.68 22.56 0.15 1.58 16 4 C 0.04 0.71 10.21 84.83 0.87 1.58 16 5 N -0.46 -9.06 10.34 -194.40 -2.01 -11.07 16 6 C 0.10 2.13 9.58 85.03 0.81 2.94 16 7 C -0.15 -3.87 5.36 -20.01 -0.11 -3.98 16 8 C 0.57 18.60 6.61 86.79 0.57 19.17 16 9 O -0.57 -23.86 15.80 -3.89 -0.06 -23.92 16 10 N -0.61 -17.55 3.33 -815.20 -2.71 -20.26 16 11 C 0.09 1.75 6.02 86.73 0.52 2.27 16 12 C -0.11 -2.05 5.60 31.82 0.18 -1.87 16 13 C -0.09 -2.66 2.63 -9.36 -0.02 -2.69 16 14 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 15 C 0.18 6.44 2.41 44.99 0.11 6.54 16 16 H 0.05 1.68 8.05 -2.39 -0.02 1.67 16 17 C -0.15 -4.76 9.34 71.98 0.67 -4.09 16 18 N -0.74 -36.29 4.82 -322.94 -1.56 -37.85 16 19 C -0.23 -12.70 9.93 84.03 0.83 -11.86 16 20 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 21 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 22 N -0.97 -60.92 13.06 21.65 0.28 -60.64 16 23 Si 0.97 47.13 29.55 68.60 2.03 49.16 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 26 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 27 C 0.13 4.43 6.06 86.86 0.53 4.95 16 28 C -0.04 -1.06 5.96 -19.30 -0.12 -1.17 16 29 C -0.10 -2.53 8.96 71.24 0.64 -1.90 16 30 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.07 0.25 7.68 -2.39 -0.02 0.23 16 32 H 0.07 0.20 7.67 -2.39 -0.02 0.18 16 33 H 0.20 1.59 6.30 -2.91 -0.02 1.57 16 34 H 0.18 3.14 6.29 -2.91 -0.02 3.12 16 35 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.09 1.37 5.71 -2.39 -0.01 1.35 16 37 H 0.09 1.53 8.01 -2.39 -0.02 1.51 16 38 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.08 1.84 7.51 -2.39 -0.02 1.82 16 41 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.37 20.02 7.80 -92.71 -0.72 19.30 16 43 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16 44 H 0.04 1.86 8.09 -2.38 -0.02 1.84 16 45 H 0.05 2.08 8.03 -2.39 -0.02 2.06 16 46 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.09 1.84 7.76 -2.39 -0.02 1.82 16 48 H 0.05 1.57 6.51 -2.39 -0.02 1.55 16 Total: -1.00 -77.02 387.21 2.54 -74.48 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.25 Total: 27.47 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 7.22 Total: 8.48 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -5.99 Total: -129.81 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.96 Total: -29.78 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -77.02 2.54 -74.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271500848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.701 kcal (2) G-P(sol) polarization free energy of solvation -77.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds