Wall clock time and date at job start Tue Mar 31 2020 17:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38089 * 119.58200 * 2 1 4 4 C 1.38784 * 119.28687 * 180.25102 * 3 2 1 5 5 C 1.50703 * 120.75870 * 179.75225 * 4 3 2 6 6 C 1.38426 * 118.48558 * 359.47662 * 4 3 2 7 7 C 1.50691 * 120.44527 * 180.23367 * 6 4 3 8 8 C 1.50707 * 109.47529 * 89.99576 * 7 6 4 9 9 O 1.21283 * 119.99613 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00130 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00173 * 180.02562 * 10 8 7 12 12 C 1.53779 * 113.61496 * 254.14009 * 11 10 8 13 13 C 1.54052 * 86.98581 * 270.83473 * 12 11 10 14 14 C 1.52997 * 113.62136 * 220.02247 * 13 12 11 15 15 N 1.46499 * 109.47280 * 272.49381 * 14 13 12 16 16 C 1.36935 * 120.00208 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99882 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99926 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00115 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99908 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47074 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47118 * 119.99773 * 20 18 16 23 23 H 1.48500 * 109.47202 * 239.99839 * 20 18 16 24 24 C 1.53779 * 113.61951 * 156.52755 * 11 10 8 25 25 C 1.38878 * 119.11097 * 0.25163 * 6 4 3 26 26 O 1.35676 * 119.68312 * 180.02562 * 25 6 4 27 27 N 1.31931 * 119.58324 * 179.71756 * 2 1 3 28 28 H 1.08997 * 109.47441 * 270.27931 * 1 2 3 29 29 H 1.08997 * 109.47127 * 30.28391 * 1 2 3 30 30 H 1.09002 * 109.46523 * 150.27853 * 1 2 3 31 31 H 1.08004 * 120.35814 * 359.97434 * 3 2 1 32 32 H 1.09002 * 109.47152 * 269.71689 * 5 4 3 33 33 H 1.09001 * 109.46980 * 149.71789 * 5 4 3 34 34 H 1.09004 * 109.47113 * 29.71770 * 5 4 3 35 35 H 1.09003 * 109.47361 * 209.99932 * 7 6 4 36 36 H 1.09009 * 109.47268 * 330.00050 * 7 6 4 37 37 H 0.97001 * 119.99946 * 359.97438 * 10 8 7 38 38 H 1.09008 * 112.84780 * 25.33082 * 11 10 8 39 39 H 1.08991 * 113.61726 * 25.42719 * 12 11 10 40 40 H 1.09009 * 113.61652 * 156.33322 * 12 11 10 41 41 H 1.08998 * 113.69103 * 89.12118 * 13 12 11 42 42 H 1.09006 * 109.47171 * 32.49268 * 14 13 12 43 43 H 1.09008 * 109.47182 * 152.48941 * 14 13 12 44 44 H 0.97003 * 119.99438 * 359.97438 * 15 14 13 45 45 H 0.96999 * 120.00315 * 180.02562 * 19 18 16 46 46 H 1.08995 * 113.62097 * 203.66610 * 24 11 10 47 47 H 1.09003 * 113.60938 * 334.57031 * 24 11 10 48 48 H 0.96693 * 114.00375 * 89.99770 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1937 -0.0053 5 6 4.3539 2.4848 -0.0111 6 6 4.2305 -0.0263 0.0007 7 6 5.7363 -0.0855 0.0006 8 6 6.2387 -0.0980 1.4214 9 8 5.4514 -0.0628 2.3433 10 7 7.5628 -0.1494 1.6675 11 6 8.0512 -0.1621 3.0486 12 6 8.6730 1.1719 3.4944 13 6 10.0132 0.6326 2.9593 14 6 11.2107 0.9762 3.8473 15 7 11.7450 2.2847 3.4619 16 6 12.8267 2.8040 4.1218 17 1 13.2856 2.2491 4.9267 18 6 13.3326 4.0441 3.7569 19 7 12.7729 4.7205 2.7763 20 14 14.8077 4.7528 4.6576 21 1 15.2472 3.8034 5.7114 22 1 15.9167 4.9727 3.6949 23 1 14.4313 6.0461 5.2830 24 6 9.4517 -0.7786 3.2012 25 6 3.4803 -1.1950 0.0064 26 8 4.1093 -2.3971 0.0128 27 7 2.1584 -1.1473 0.0057 28 1 -0.3634 0.0050 1.0276 29 1 -0.3633 0.8874 -0.5182 30 1 -0.3632 -0.8925 -0.5095 31 1 1.6478 2.1357 -0.0004 32 1 4.5418 2.7912 -1.0401 33 1 5.3036 2.3394 0.5038 34 1 3.7787 3.2576 0.4989 35 1 6.0643 -0.9917 -0.5088 36 1 6.1342 0.7869 -0.5178 37 1 8.1924 -0.1787 0.9302 38 1 7.3200 -0.5598 3.7525 39 1 8.2970 2.0344 2.9443 40 1 8.6618 1.3196 4.5743 41 1 10.1876 0.8586 1.9074 42 1 10.8934 1.0061 4.8897 43 1 11.9837 0.2175 3.7245 44 1 11.3330 2.7828 2.7387 45 1 13.1267 5.5869 2.5211 46 1 9.6530 -1.1631 4.2010 47 1 9.7038 -1.4896 2.4144 48 1 4.2914 -2.7411 0.8980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275273951.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:48 Heat of formation + Delta-G solvation = -21.530716 kcal Electronic energy + Delta-G solvation = -27992.281319 eV Core-core repulsion = 24048.038516 eV Total energy + Delta-G solvation = -3944.242803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.19260 -40.08375 -38.35992 -37.51744 -35.05657 -34.55706 -33.21936 -32.18974 -31.00880 -30.37364 -28.03747 -27.05914 -26.00951 -25.54219 -23.49783 -22.97753 -21.68517 -21.35231 -20.58372 -19.12518 -18.60267 -17.54884 -17.35539 -17.01105 -16.25928 -15.87607 -15.44575 -15.21997 -14.80651 -14.54451 -14.39372 -14.10798 -13.76804 -13.73594 -13.45902 -13.43094 -13.24432 -13.16004 -12.83019 -12.62457 -12.42252 -12.23077 -12.18412 -12.15919 -11.83725 -11.80065 -11.63920 -11.05898 -10.86191 -10.52224 -10.36540 -10.11065 -10.09827 -9.85876 -9.69683 -9.65957 -9.60341 -9.06761 -8.89360 -8.86434 -6.91788 -5.77801 -3.05836 0.70552 0.93551 2.45093 2.94694 3.19677 3.42066 3.47808 3.49972 3.55177 4.14195 4.30281 4.51678 4.54383 4.56717 4.60598 4.70907 4.79202 4.91000 5.03115 5.06848 5.08492 5.10475 5.10671 5.24108 5.27149 5.32487 5.44374 5.56669 5.57238 5.69232 5.75154 5.78604 5.83219 5.90199 5.97734 6.00092 6.07947 6.19845 6.27159 6.27679 6.39313 6.59418 6.76289 6.91184 7.20573 7.36867 7.69490 7.69690 8.06943 8.41526 9.52639 10.11645 10.46028 11.45267 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022141 B = 0.002018 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.317894 B =13872.458602 C =14682.287430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.151 3.849 3 C -0.183 4.183 4 C -0.009 4.009 5 C -0.121 4.121 6 C -0.136 4.136 7 C -0.099 4.099 8 C 0.518 3.482 9 O -0.538 6.538 10 N -0.708 5.708 11 C 0.116 3.884 12 C -0.138 4.138 13 C -0.113 4.113 14 C 0.162 3.838 15 N -0.732 5.732 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.016 4.016 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.138 4.138 25 C 0.331 3.669 26 O -0.483 6.483 27 N -0.508 5.508 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.138 0.862 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.403 0.597 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.020 0.980 43 H 0.018 0.982 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.094 0.906 47 H 0.069 0.931 48 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.089 -11.142 -8.194 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.014 3.986 3 C -0.203 4.203 4 C -0.017 4.017 5 C -0.178 4.178 6 C -0.140 4.140 7 C -0.140 4.140 8 C 0.304 3.696 9 O -0.414 6.414 10 N -0.359 5.359 11 C 0.010 3.990 12 C -0.177 4.177 13 C -0.131 4.131 14 C 0.034 3.966 15 N -0.376 5.376 16 C -0.369 4.369 17 H 0.088 0.912 18 C -0.212 4.212 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.176 4.176 25 C 0.152 3.848 26 O -0.290 6.290 27 N -0.228 5.228 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.156 0.844 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.237 0.763 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.038 0.962 43 H 0.036 0.964 44 H 0.216 0.784 45 H 0.064 0.936 46 H 0.113 0.887 47 H 0.088 0.912 48 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -22.960 -11.867 -7.991 27.052 hybrid contribution 1.676 1.286 0.372 2.145 sum -21.284 -10.582 -7.619 24.960 Atomic orbital electron populations 1.20741 0.88515 1.03561 1.03303 1.20972 0.96721 0.87182 0.93769 1.21804 0.93907 0.99413 1.05177 1.20092 0.93751 0.94884 0.92968 1.20896 1.00382 0.93456 1.03026 1.20072 0.95321 0.92841 1.05716 1.20550 0.92038 1.06130 0.95268 1.20465 0.82293 0.75906 0.90960 1.90721 1.55286 1.49191 1.46222 1.45699 1.06825 1.74722 1.08621 1.21942 0.95628 0.98322 0.83062 1.23449 0.95874 0.96558 1.01793 1.22804 0.95205 0.94570 1.00553 1.20643 0.92041 0.88790 0.95109 1.42350 1.35780 1.17452 1.41990 1.19296 1.05143 1.00194 1.12281 0.91172 1.24742 0.99869 0.97526 0.99031 1.69665 1.42951 1.14565 1.31124 0.86118 0.82432 0.78851 0.78816 1.20567 1.21886 1.21894 1.23305 0.94188 0.97262 1.02875 1.18793 0.86615 0.84786 0.94574 1.84684 1.76544 1.33686 1.34087 1.66966 1.09476 1.30741 1.15633 0.90182 0.90465 0.90392 0.84413 0.90011 0.90760 0.90463 0.86998 0.87395 0.76285 0.88479 0.91380 0.89177 0.89410 0.96225 0.96397 0.78363 0.93615 0.88728 0.91207 0.74033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.17 36.01 0.37 -0.34 16 2 C 0.15 1.54 6.78 -82.60 -0.56 0.98 16 3 C -0.18 -1.70 9.44 -39.43 -0.37 -2.07 16 4 C -0.01 -0.09 5.91 -104.35 -0.62 -0.71 16 5 C -0.12 -0.97 9.28 36.01 0.33 -0.64 16 6 C -0.14 -1.46 4.40 -104.32 -0.46 -1.92 16 7 C -0.10 -0.87 4.96 -29.04 -0.14 -1.01 16 8 C 0.52 5.80 7.51 -10.98 -0.08 5.72 16 9 O -0.54 -8.08 15.65 5.55 0.09 -7.99 16 10 N -0.71 -7.20 5.26 -53.02 -0.28 -7.48 16 11 C 0.12 1.37 4.29 -67.12 -0.29 1.08 16 12 C -0.14 -1.97 7.45 -25.78 -0.19 -2.16 16 13 C -0.11 -1.66 3.65 -89.66 -0.33 -1.99 16 14 C 0.16 3.15 6.10 -4.04 -0.02 3.12 16 15 N -0.73 -18.34 5.60 -59.91 -0.34 -18.68 16 16 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 19 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 20 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 C -0.14 -1.57 7.38 -25.92 -0.19 -1.76 16 25 C 0.33 3.96 7.72 -17.12 -0.13 3.83 16 26 O -0.48 -5.05 12.62 -18.73 -0.24 -5.29 16 27 N -0.51 -6.35 10.30 -9.55 -0.10 -6.45 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.35 8.08 -51.93 -0.42 -0.07 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.67 6.55 -51.93 -0.34 0.33 16 34 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.11 0.82 7.55 -51.93 -0.39 0.43 16 36 H 0.11 0.75 6.81 -51.92 -0.35 0.40 16 37 H 0.40 3.25 8.70 -40.82 -0.36 2.89 16 38 H 0.10 1.24 7.50 -51.92 -0.39 0.85 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.33 7.90 -51.92 -0.41 0.92 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 43 H 0.02 0.36 8.14 -51.92 -0.42 -0.07 16 44 H 0.38 10.06 7.67 -40.82 -0.31 9.75 16 45 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.40 2.93 9.06 45.56 0.41 3.34 16 LS Contribution 398.97 15.07 6.01 6.01 Total: -1.00 -35.72 398.97 -8.82 -44.55 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.74 Total: 10.62 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.94 Total: -5.24 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: 0.01 Total: -60.04 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.15 Total: -13.28 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.72 -8.82 -44.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275273951.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.016 kcal (2) G-P(sol) polarization free energy of solvation -35.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds