Wall clock time and date at job start Tue Mar 31 2020 17:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38089 * 119.58200 * 2 1 4 4 C 1.38784 * 119.28687 * 180.25102 * 3 2 1 5 5 C 1.50703 * 120.75870 * 179.75225 * 4 3 2 6 6 C 1.38426 * 118.48558 * 359.47662 * 4 3 2 7 7 C 1.50691 * 120.44527 * 180.23367 * 6 4 3 8 8 C 1.50707 * 109.47529 * 89.99576 * 7 6 4 9 9 O 1.21283 * 119.99613 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00130 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00173 * 180.02562 * 10 8 7 12 12 C 1.53779 * 113.61496 * 254.14009 * 11 10 8 13 13 C 1.54052 * 86.98581 * 270.83473 * 12 11 10 14 14 C 1.52997 * 113.62136 * 220.02247 * 13 12 11 15 15 N 1.46499 * 109.47280 * 272.49381 * 14 13 12 16 16 C 1.36935 * 120.00208 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99882 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99926 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00115 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99908 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47074 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47118 * 119.99773 * 20 18 16 23 23 H 1.48500 * 109.47202 * 239.99839 * 20 18 16 24 24 C 1.53779 * 113.61951 * 156.52755 * 11 10 8 25 25 C 1.38878 * 119.11097 * 0.25163 * 6 4 3 26 26 O 1.35676 * 119.68312 * 180.02562 * 25 6 4 27 27 N 1.31931 * 119.58324 * 179.71756 * 2 1 3 28 28 H 1.08997 * 109.47441 * 270.27931 * 1 2 3 29 29 H 1.08997 * 109.47127 * 30.28391 * 1 2 3 30 30 H 1.09002 * 109.46523 * 150.27853 * 1 2 3 31 31 H 1.08004 * 120.35814 * 359.97434 * 3 2 1 32 32 H 1.09002 * 109.47152 * 269.71689 * 5 4 3 33 33 H 1.09001 * 109.46980 * 149.71789 * 5 4 3 34 34 H 1.09004 * 109.47113 * 29.71770 * 5 4 3 35 35 H 1.09003 * 109.47361 * 209.99932 * 7 6 4 36 36 H 1.09009 * 109.47268 * 330.00050 * 7 6 4 37 37 H 0.97001 * 119.99946 * 359.97438 * 10 8 7 38 38 H 1.09008 * 112.84780 * 25.33082 * 11 10 8 39 39 H 1.08991 * 113.61726 * 25.42719 * 12 11 10 40 40 H 1.09009 * 113.61652 * 156.33322 * 12 11 10 41 41 H 1.08998 * 113.69103 * 89.12118 * 13 12 11 42 42 H 1.09006 * 109.47171 * 32.49268 * 14 13 12 43 43 H 1.09008 * 109.47182 * 152.48941 * 14 13 12 44 44 H 0.97003 * 119.99438 * 359.97438 * 15 14 13 45 45 H 0.96999 * 120.00315 * 180.02562 * 19 18 16 46 46 H 1.08995 * 113.62097 * 203.66610 * 24 11 10 47 47 H 1.09003 * 113.60938 * 334.57031 * 24 11 10 48 48 H 0.96693 * 114.00375 * 89.99770 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1937 -0.0053 5 6 4.3539 2.4848 -0.0111 6 6 4.2305 -0.0263 0.0007 7 6 5.7363 -0.0855 0.0006 8 6 6.2387 -0.0980 1.4214 9 8 5.4514 -0.0628 2.3433 10 7 7.5628 -0.1494 1.6675 11 6 8.0512 -0.1621 3.0486 12 6 8.6730 1.1719 3.4944 13 6 10.0132 0.6326 2.9593 14 6 11.2107 0.9762 3.8473 15 7 11.7450 2.2847 3.4619 16 6 12.8267 2.8040 4.1218 17 1 13.2856 2.2491 4.9267 18 6 13.3326 4.0441 3.7569 19 7 12.7729 4.7205 2.7763 20 14 14.8077 4.7528 4.6576 21 1 15.2472 3.8034 5.7114 22 1 15.9167 4.9727 3.6949 23 1 14.4313 6.0461 5.2830 24 6 9.4517 -0.7786 3.2012 25 6 3.4803 -1.1950 0.0064 26 8 4.1093 -2.3971 0.0128 27 7 2.1584 -1.1473 0.0057 28 1 -0.3634 0.0050 1.0276 29 1 -0.3633 0.8874 -0.5182 30 1 -0.3632 -0.8925 -0.5095 31 1 1.6478 2.1357 -0.0004 32 1 4.5418 2.7912 -1.0401 33 1 5.3036 2.3394 0.5038 34 1 3.7787 3.2576 0.4989 35 1 6.0643 -0.9917 -0.5088 36 1 6.1342 0.7869 -0.5178 37 1 8.1924 -0.1787 0.9302 38 1 7.3200 -0.5598 3.7525 39 1 8.2970 2.0344 2.9443 40 1 8.6618 1.3196 4.5743 41 1 10.1876 0.8586 1.9074 42 1 10.8934 1.0061 4.8897 43 1 11.9837 0.2175 3.7245 44 1 11.3330 2.7828 2.7387 45 1 13.1267 5.5869 2.5211 46 1 9.6530 -1.1631 4.2010 47 1 9.7038 -1.4896 2.4144 48 1 4.2914 -2.7411 0.8980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275273951.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:47 Heat of formation + Delta-G solvation = -49.261513 kcal Electronic energy + Delta-G solvation = -27993.483816 eV Core-core repulsion = 24048.038516 eV Total energy + Delta-G solvation = -3945.445301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.96767 -41.04855 -39.41980 -38.26484 -36.35284 -35.75989 -34.43378 -32.99032 -32.73003 -31.17536 -28.76360 -28.47068 -26.90850 -26.62012 -25.17658 -23.84355 -22.97724 -22.30176 -21.39649 -20.29610 -19.36162 -19.06449 -18.30378 -18.15545 -17.15506 -16.79723 -16.61242 -16.26015 -16.11571 -15.68922 -15.56316 -15.15607 -15.09515 -14.71683 -14.58513 -14.37476 -14.09306 -13.95903 -13.85187 -13.63486 -13.38871 -13.19948 -13.12340 -12.98264 -12.86198 -12.82978 -12.68670 -12.52266 -12.48360 -12.12725 -11.93265 -11.73673 -11.34989 -11.14640 -11.05794 -10.85990 -10.45935 -10.37781 -10.03012 -9.62830 -8.97360 -7.95367 -5.23199 -0.03686 0.18926 1.47120 1.47634 1.57388 1.57769 2.11889 2.45818 2.55886 2.82027 3.37773 3.44411 3.60142 3.60819 3.66096 3.80153 3.87515 3.91658 3.95312 3.98581 4.26209 4.34326 4.39040 4.44872 4.53309 4.57658 4.68096 4.69491 4.77558 4.78476 4.82401 4.85851 4.92781 4.93325 4.99474 5.00442 5.10422 5.16311 5.20153 5.28448 5.30470 5.37896 5.49944 5.62748 5.69283 6.27947 6.49644 6.54906 6.94660 7.22344 7.33922 8.11993 8.34384 9.28355 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022141 B = 0.002018 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.317894 B =13872.458602 C =14682.287430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.135 3.865 3 C -0.186 4.186 4 C -0.021 4.021 5 C -0.119 4.119 6 C -0.149 4.149 7 C -0.091 4.091 8 C 0.521 3.479 9 O -0.578 6.578 10 N -0.699 5.699 11 C 0.128 3.872 12 C -0.143 4.143 13 C -0.110 4.110 14 C 0.158 3.842 15 N -0.744 5.744 16 C -0.244 4.244 17 H 0.074 0.926 18 C -0.078 4.078 19 N -0.969 5.969 20 Si 0.972 3.028 21 H -0.267 1.267 22 H -0.292 1.292 23 H -0.294 1.294 24 C -0.117 4.117 25 C 0.311 3.689 26 O -0.489 6.489 27 N -0.540 5.540 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.165 0.835 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.415 0.585 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.018 0.982 43 H 0.021 0.979 44 H 0.373 0.627 45 H 0.251 0.749 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.156 -11.545 -8.521 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.001 4.001 3 C -0.205 4.205 4 C -0.029 4.029 5 C -0.175 4.175 6 C -0.153 4.153 7 C -0.131 4.131 8 C 0.309 3.691 9 O -0.458 6.458 10 N -0.350 5.350 11 C 0.022 3.978 12 C -0.182 4.182 13 C -0.129 4.129 14 C 0.032 3.968 15 N -0.387 5.387 16 C -0.376 4.376 17 H 0.092 0.908 18 C -0.270 4.270 19 N -0.620 5.620 20 Si 0.802 3.198 21 H -0.191 1.191 22 H -0.219 1.219 23 H -0.222 1.222 24 C -0.155 4.155 25 C 0.132 3.868 26 O -0.298 6.298 27 N -0.261 5.261 28 H 0.105 0.895 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.183 0.817 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.252 0.748 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.036 0.964 43 H 0.039 0.961 44 H 0.205 0.795 45 H 0.060 0.940 46 H 0.122 0.878 47 H 0.112 0.888 48 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -23.009 -12.321 -8.315 27.393 hybrid contribution 1.644 1.386 0.506 2.209 sum -21.365 -10.935 -7.809 25.239 Atomic orbital electron populations 1.20826 0.86387 1.04578 1.04026 1.21575 0.98285 0.87052 0.93236 1.22148 0.93920 1.00257 1.04201 1.20455 0.94455 0.95411 0.92557 1.20928 0.99617 0.92749 1.04193 1.20272 0.96244 0.92824 1.05950 1.20556 0.91000 1.07836 0.93696 1.20848 0.82056 0.74712 0.91517 1.90707 1.56300 1.51108 1.47640 1.45620 1.06931 1.74062 1.08397 1.21717 0.95772 0.96464 0.83821 1.23451 0.96172 0.97387 1.01143 1.22729 0.93241 0.97357 0.99537 1.20840 0.93673 0.86324 0.95936 1.42574 1.35326 1.19239 1.41538 1.19695 1.05607 1.00293 1.12045 0.90783 1.25560 1.02927 0.98223 1.00268 1.69811 1.44570 1.14801 1.32806 0.85085 0.79017 0.77926 0.77816 1.19112 1.21925 1.22151 1.23217 0.92534 0.95512 1.04267 1.19062 0.86888 0.85445 0.95364 1.84642 1.76465 1.33561 1.35086 1.66990 1.10044 1.32139 1.16883 0.89489 0.87966 0.90836 0.81704 0.88077 0.91879 0.89660 0.85390 0.85367 0.74754 0.89074 0.92889 0.90050 0.89364 0.96385 0.96092 0.79485 0.94039 0.87846 0.88832 0.72930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.17 71.24 0.72 -0.52 16 2 C 0.14 2.69 6.78 42.51 0.29 2.98 16 3 C -0.19 -3.21 9.44 22.37 0.21 -3.00 16 4 C -0.02 -0.40 5.91 -19.69 -0.12 -0.52 16 5 C -0.12 -1.72 9.28 71.24 0.66 -1.06 16 6 C -0.15 -3.12 4.40 -19.67 -0.09 -3.20 16 7 C -0.09 -1.47 4.96 29.10 0.14 -1.32 16 8 C 0.52 11.13 7.51 87.66 0.66 11.79 16 9 O -0.58 -17.24 15.65 -3.04 -0.05 -17.29 16 10 N -0.70 -13.05 5.26 -440.04 -2.32 -15.36 16 11 C 0.13 2.85 4.29 45.52 0.20 3.05 16 12 C -0.14 -4.02 7.45 31.21 0.23 -3.78 16 13 C -0.11 -3.12 3.65 -10.17 -0.04 -3.15 16 14 C 0.16 6.05 6.10 86.38 0.53 6.58 16 15 N -0.74 -37.38 5.60 -343.44 -1.92 -39.30 16 16 C -0.24 -13.65 9.99 84.03 0.84 -12.81 16 17 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 18 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 19 N -0.97 -59.00 13.06 21.65 0.28 -58.72 16 20 Si 0.97 46.05 29.55 68.60 2.03 48.07 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 24 C -0.12 -2.37 7.38 31.12 0.23 -2.14 16 25 C 0.31 7.44 7.72 84.78 0.65 8.09 16 26 O -0.49 -10.22 12.62 -89.93 -1.14 -11.36 16 27 N -0.54 -13.58 10.30 -296.97 -3.06 -16.64 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.10 0.71 8.08 -2.39 -0.02 0.69 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.06 6.55 -2.39 -0.02 1.05 16 34 H 0.08 1.09 8.10 -2.38 -0.02 1.07 16 35 H 0.13 1.64 7.55 -2.39 -0.02 1.62 16 36 H 0.13 1.52 6.81 -2.38 -0.02 1.51 16 37 H 0.42 5.71 8.70 -92.71 -0.81 4.90 16 38 H 0.09 2.23 7.50 -2.38 -0.02 2.21 16 39 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.08 2.42 7.90 -2.38 -0.02 2.40 16 41 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.02 0.71 7.85 -2.38 -0.02 0.69 16 43 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.37 19.88 7.67 -92.71 -0.71 19.17 16 45 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 46 H 0.10 1.98 8.10 -2.39 -0.02 1.96 16 47 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.41 6.11 9.06 -74.06 -0.67 5.44 16 Total: -1.00 -77.61 398.97 -1.76 -79.37 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: -1.18 Total: 34.26 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 5.59 Total: -3.03 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -7.02 Total: -130.02 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -1.18 Total: -28.65 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -77.61 -1.76 -79.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275273951.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.107 kcal (2) G-P(sol) polarization free energy of solvation -77.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds