Wall clock time and date at job start Tue Mar 31 2020 18:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40195 * 120.37035 * 2 1 4 4 C 1.35347 * 119.94721 * 179.76722 * 3 2 1 5 5 N 1.35760 * 120.70417 * 0.53263 * 4 3 2 6 6 C 1.46506 * 119.62710 * 179.71936 * 5 4 3 7 7 C 1.50703 * 109.46877 * 269.72326 * 6 5 4 8 8 O 1.21281 * 119.99990 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00069 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00214 * 180.02562 * 9 7 6 11 11 H 1.09003 * 110.67199 * 34.29940 * 10 9 7 12 12 C 1.54892 * 110.75640 * 271.06589 * 10 9 7 13 13 C 1.54470 * 104.09876 * 203.89372 * 12 10 9 14 14 C 1.53874 * 106.68760 * 23.34264 * 13 12 10 15 15 H 1.08997 * 110.07245 * 240.84935 * 14 13 12 16 16 C 1.53003 * 110.03165 * 119.44183 * 14 13 12 17 17 N 1.46500 * 109.47004 * 67.83760 * 16 14 13 18 18 C 1.36935 * 119.99552 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00347 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99623 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00215 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99977 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46913 * 90.00218 * 22 20 18 24 24 H 1.48504 * 109.47039 * 210.00181 * 22 20 18 25 25 H 1.48496 * 109.47317 * 330.00293 * 22 20 18 26 26 C 1.54263 * 106.59743 * 0.15895 * 14 13 12 27 27 C 1.34661 * 120.74955 * 359.43543 * 5 4 3 28 28 O 1.22059 * 119.98477 * 180.27473 * 27 5 4 29 29 C 1.36399 * 120.36637 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47237 * 269.97961 * 1 2 3 31 31 H 1.09002 * 109.46482 * 29.97911 * 1 2 3 32 32 H 1.09002 * 109.46864 * 149.97781 * 1 2 3 33 33 H 1.07997 * 120.02497 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.64907 * 180.25000 * 4 3 2 35 35 H 1.09000 * 109.46803 * 29.71805 * 6 5 4 36 36 H 1.09000 * 109.47214 * 149.72598 * 6 5 4 37 37 H 0.97000 * 119.99813 * 0.02562 * 9 7 6 38 38 H 1.09001 * 110.48381 * 322.41791 * 12 10 9 39 39 H 1.08992 * 110.48653 * 85.06227 * 12 10 9 40 40 H 1.08996 * 109.85821 * 264.09727 * 13 12 10 41 41 H 1.09001 * 110.15757 * 142.74819 * 13 12 10 42 42 H 1.09007 * 109.46771 * 187.83235 * 16 14 13 43 43 H 1.09002 * 109.46990 * 307.83230 * 16 14 13 44 44 H 0.96999 * 119.99578 * 359.97438 * 17 16 14 45 45 H 0.96996 * 120.00562 * 179.97438 * 21 20 18 46 46 H 1.09009 * 110.48536 * 217.71410 * 26 14 13 47 47 H 1.09000 * 110.49343 * 95.07033 * 26 14 13 48 48 H 1.07997 * 120.34966 * 359.96116 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1996 0.0048 5 7 4.2538 0.0272 -0.0013 6 6 5.7188 0.0440 -0.0022 7 6 6.2202 0.0497 -1.4233 8 8 5.4315 0.0411 -2.3446 9 7 7.5450 0.0653 -1.6705 10 6 8.0324 0.0714 -3.0519 11 1 7.3592 0.6384 -3.6950 12 6 8.2067 -1.3747 -3.5789 13 6 9.2502 -1.2398 -4.7098 14 6 10.0508 0.0423 -4.4217 15 1 9.9347 0.7485 -5.2438 16 6 11.5301 -0.2962 -4.2270 17 7 12.0982 -0.7520 -5.4981 18 6 13.4171 -1.1133 -5.5681 19 1 14.0387 -1.0619 -4.6864 20 6 13.9553 -1.5457 -6.7724 21 7 13.1979 -1.6080 -7.8471 22 14 15.7547 -2.0380 -6.8682 23 1 15.8877 -3.4874 -6.5736 24 1 16.2718 -1.7606 -8.2324 25 1 16.5350 -1.2574 -5.8748 26 6 9.4707 0.6418 -3.1241 27 6 3.6017 -1.1509 -0.0007 28 8 4.2312 -2.1966 -0.0012 29 6 2.1965 -1.1769 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3632 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6823 2.1486 0.0004 34 1 4.1104 2.1342 0.0088 35 1 6.0722 0.9382 0.5113 36 1 6.0926 -0.8418 0.5115 37 1 8.1757 0.0726 -0.9336 38 1 8.5835 -2.0254 -2.7898 39 1 7.2629 -1.7546 -3.9698 40 1 8.7449 -1.1562 -5.6719 41 1 9.9157 -2.1031 -4.7117 42 1 12.0643 0.5915 -3.8879 43 1 11.6272 -1.0856 -3.4817 44 1 11.5398 -0.7985 -6.2899 45 1 13.5740 -1.9098 -8.6887 46 1 9.4469 1.7300 -3.1840 47 1 10.0528 0.3190 -2.2610 48 1 1.6683 -2.1188 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278593929.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:10 Heat of formation + Delta-G solvation = -37.005703 kcal Electronic energy + Delta-G solvation = -27780.563006 eV Core-core repulsion = 23835.649157 eV Total energy + Delta-G solvation = -3944.913849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.81191 -39.91436 -38.09091 -37.30794 -35.61031 -34.86968 -33.50834 -31.28368 -30.75278 -29.80554 -28.76068 -28.17504 -26.69650 -24.32933 -24.05348 -22.20852 -22.19069 -21.08229 -20.70863 -19.17614 -17.97002 -17.84727 -17.76362 -17.04206 -16.37110 -16.17298 -15.61967 -15.48487 -15.24454 -14.60088 -14.57902 -14.47284 -14.10584 -13.70549 -13.45731 -13.41444 -13.23401 -13.05773 -12.79517 -12.74988 -12.49276 -12.14078 -12.04839 -11.98723 -11.84491 -11.49311 -11.10151 -10.86126 -10.79435 -10.53758 -10.52053 -10.37409 -10.23567 -10.10846 -9.88836 -9.86571 -9.65566 -9.18907 -8.85191 -8.28900 -6.89564 -5.74580 -3.03090 0.48556 1.57351 2.10739 2.28059 2.90627 3.40135 3.44517 3.49360 3.51221 4.09984 4.19470 4.29786 4.36974 4.59167 4.60338 4.68634 4.70244 4.82974 4.86046 4.95658 5.01852 5.12074 5.18452 5.41572 5.49200 5.55961 5.59733 5.59917 5.61819 5.68443 5.72037 5.83287 5.89861 6.03106 6.09062 6.15277 6.17357 6.28518 6.34099 6.41206 6.55859 6.68703 6.72984 6.83207 6.94703 7.20988 7.71114 7.76153 7.91287 8.44448 9.55501 10.14501 10.49101 11.48293 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.036132 B = 0.001743 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.759380 B =16058.730351 C =16160.121850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.015 3.985 3 C -0.229 4.229 4 C 0.144 3.856 5 N -0.482 5.482 6 C 0.070 3.930 7 C 0.500 3.500 8 O -0.526 6.526 9 N -0.716 5.716 10 C 0.139 3.861 11 H 0.095 0.905 12 C -0.132 4.132 13 C -0.115 4.115 14 C -0.095 4.095 15 H 0.075 0.925 16 C 0.161 3.839 17 N -0.732 5.732 18 C -0.240 4.240 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.119 4.119 27 C 0.522 3.478 28 O -0.550 6.550 29 C -0.247 4.247 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.401 0.599 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.016 0.984 43 H 0.019 0.981 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.450 9.698 21.316 33.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.011 3.989 3 C -0.252 4.252 4 C 0.017 3.983 5 N -0.193 5.193 6 C -0.056 4.056 7 C 0.284 3.716 8 O -0.401 6.401 9 N -0.367 5.367 10 C 0.035 3.965 11 H 0.113 0.887 12 C -0.171 4.171 13 C -0.153 4.153 14 C -0.115 4.115 15 H 0.093 0.907 16 C 0.033 3.967 17 N -0.376 5.376 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.158 4.158 27 C 0.324 3.676 28 O -0.432 6.432 29 C -0.269 4.269 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.163 0.837 34 H 0.178 0.822 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.236 0.764 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.034 0.966 43 H 0.036 0.964 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -24.409 8.978 20.675 33.225 hybrid contribution 1.210 -0.232 -0.120 1.238 sum -23.199 8.746 20.555 32.205 Atomic orbital electron populations 1.20932 0.90325 1.03665 1.03053 1.20212 0.96814 0.92652 0.89207 1.20525 0.92348 0.98950 1.13372 1.21875 0.93637 0.89427 0.93375 1.45024 1.07099 1.07327 1.59838 1.21812 0.79934 1.07369 0.96505 1.20652 0.83116 0.76778 0.91047 1.90766 1.55141 1.48523 1.45714 1.45959 1.06314 1.74896 1.09536 1.22121 0.95527 0.97475 0.81378 0.88736 1.22765 0.99536 0.95884 0.98871 1.22164 0.96767 0.98847 0.97524 1.21869 0.96344 0.96900 0.96348 0.90698 1.20736 0.89699 0.96142 0.90101 1.42367 1.09361 1.79319 1.06586 1.19233 0.86756 1.36176 0.94944 0.91259 1.24742 0.98057 1.02455 0.95787 1.69660 1.34982 1.53607 0.99920 0.86194 0.84936 0.78305 0.76773 1.21752 1.21783 1.20811 1.22604 0.93680 1.00197 0.99292 1.17095 0.89382 0.82417 0.78676 1.90970 1.69101 1.30248 1.52894 1.21928 0.92229 0.99626 1.13079 0.90103 0.90722 0.90764 0.83704 0.82180 0.86033 0.85186 0.76412 0.91499 0.91648 0.91938 0.90251 0.96579 0.96350 0.78207 0.93534 0.91194 0.90831 0.83532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 10.03 36.01 0.36 -0.18 16 2 C 0.01 0.11 5.89 -104.55 -0.62 -0.51 16 3 C -0.23 -1.39 9.71 -39.88 -0.39 -1.77 16 4 C 0.14 0.92 10.28 -16.84 -0.17 0.75 16 5 N -0.48 -4.54 2.07 -121.06 -0.25 -4.79 16 6 C 0.07 0.52 5.82 -5.19 -0.03 0.49 16 7 C 0.50 5.50 7.90 -10.99 -0.09 5.41 16 8 O -0.53 -8.22 16.12 5.56 0.09 -8.13 16 9 N -0.72 -6.75 5.19 -51.88 -0.27 -7.02 16 10 C 0.14 1.67 3.21 -65.94 -0.21 1.45 16 11 H 0.09 1.27 7.62 -51.93 -0.40 0.87 16 12 C -0.13 -1.84 6.53 -24.96 -0.16 -2.01 16 13 C -0.11 -1.84 6.19 -25.50 -0.16 -2.00 16 14 C -0.10 -1.50 2.96 -89.50 -0.27 -1.77 16 15 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 16 C 0.16 3.18 5.27 -4.04 -0.02 3.16 16 17 N -0.73 -18.60 5.39 -59.90 -0.32 -18.93 16 18 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 22 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 C -0.12 -1.40 5.98 -25.07 -0.15 -1.55 16 27 C 0.52 6.63 7.40 -15.45 -0.11 6.52 16 28 O -0.55 -9.09 16.64 4.86 0.08 -9.01 16 29 C -0.25 -2.53 9.65 -39.38 -0.38 -2.91 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.25 8.10 -51.93 -0.42 -0.18 16 32 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 33 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 34 H 0.16 0.45 8.03 -52.49 -0.42 0.03 16 35 H 0.12 0.33 8.01 -51.93 -0.42 -0.09 16 36 H 0.13 0.99 7.39 -51.93 -0.38 0.60 16 37 H 0.40 2.50 8.54 -40.82 -0.35 2.15 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.46 7.61 -51.93 -0.40 1.06 16 42 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.38 10.29 7.55 -40.82 -0.31 9.98 16 45 H 0.25 7.53 8.31 -40.82 -0.34 7.20 16 46 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 47 H 0.07 0.79 7.73 -51.93 -0.40 0.39 16 48 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 397.72 15.07 5.99 5.99 Total: -1.00 -38.40 397.72 -9.30 -47.71 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.68 Total: 6.75 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -2.64 Total: -2.35 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.12 Total: -58.53 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: 0.17 Total: -17.14 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.40 -9.30 -47.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278593929.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.701 kcal (2) G-P(sol) polarization free energy of solvation -38.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds