Wall clock time and date at job start Tue Mar 31 2020 18:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40195 * 120.37035 * 2 1 4 4 C 1.35347 * 119.94721 * 179.76722 * 3 2 1 5 5 N 1.35760 * 120.70417 * 0.53263 * 4 3 2 6 6 C 1.46506 * 119.62710 * 179.71936 * 5 4 3 7 7 C 1.50703 * 109.46877 * 269.72326 * 6 5 4 8 8 O 1.21281 * 119.99990 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00069 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00214 * 180.02562 * 9 7 6 11 11 H 1.09003 * 110.67199 * 34.29940 * 10 9 7 12 12 C 1.54892 * 110.75640 * 271.06589 * 10 9 7 13 13 C 1.54470 * 104.09876 * 203.89372 * 12 10 9 14 14 C 1.53874 * 106.68760 * 23.34264 * 13 12 10 15 15 H 1.08997 * 110.07245 * 240.84935 * 14 13 12 16 16 C 1.53003 * 110.03165 * 119.44183 * 14 13 12 17 17 N 1.46500 * 109.47004 * 67.83760 * 16 14 13 18 18 C 1.36935 * 119.99552 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00347 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99623 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00215 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99977 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46913 * 90.00218 * 22 20 18 24 24 H 1.48504 * 109.47039 * 210.00181 * 22 20 18 25 25 H 1.48496 * 109.47317 * 330.00293 * 22 20 18 26 26 C 1.54263 * 106.59743 * 0.15895 * 14 13 12 27 27 C 1.34661 * 120.74955 * 359.43543 * 5 4 3 28 28 O 1.22059 * 119.98477 * 180.27473 * 27 5 4 29 29 C 1.36399 * 120.36637 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47237 * 269.97961 * 1 2 3 31 31 H 1.09002 * 109.46482 * 29.97911 * 1 2 3 32 32 H 1.09002 * 109.46864 * 149.97781 * 1 2 3 33 33 H 1.07997 * 120.02497 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.64907 * 180.25000 * 4 3 2 35 35 H 1.09000 * 109.46803 * 29.71805 * 6 5 4 36 36 H 1.09000 * 109.47214 * 149.72598 * 6 5 4 37 37 H 0.97000 * 119.99813 * 0.02562 * 9 7 6 38 38 H 1.09001 * 110.48381 * 322.41791 * 12 10 9 39 39 H 1.08992 * 110.48653 * 85.06227 * 12 10 9 40 40 H 1.08996 * 109.85821 * 264.09727 * 13 12 10 41 41 H 1.09001 * 110.15757 * 142.74819 * 13 12 10 42 42 H 1.09007 * 109.46771 * 187.83235 * 16 14 13 43 43 H 1.09002 * 109.46990 * 307.83230 * 16 14 13 44 44 H 0.96999 * 119.99578 * 359.97438 * 17 16 14 45 45 H 0.96996 * 120.00562 * 179.97438 * 21 20 18 46 46 H 1.09009 * 110.48536 * 217.71410 * 26 14 13 47 47 H 1.09000 * 110.49343 * 95.07033 * 26 14 13 48 48 H 1.07997 * 120.34966 * 359.96116 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1996 0.0048 5 7 4.2538 0.0272 -0.0013 6 6 5.7188 0.0440 -0.0022 7 6 6.2202 0.0497 -1.4233 8 8 5.4315 0.0411 -2.3446 9 7 7.5450 0.0653 -1.6705 10 6 8.0324 0.0714 -3.0519 11 1 7.3592 0.6384 -3.6950 12 6 8.2067 -1.3747 -3.5789 13 6 9.2502 -1.2398 -4.7098 14 6 10.0508 0.0423 -4.4217 15 1 9.9347 0.7485 -5.2438 16 6 11.5301 -0.2962 -4.2270 17 7 12.0982 -0.7520 -5.4981 18 6 13.4171 -1.1133 -5.5681 19 1 14.0387 -1.0619 -4.6864 20 6 13.9553 -1.5457 -6.7724 21 7 13.1979 -1.6080 -7.8471 22 14 15.7547 -2.0380 -6.8682 23 1 15.8877 -3.4874 -6.5736 24 1 16.2718 -1.7606 -8.2324 25 1 16.5350 -1.2574 -5.8748 26 6 9.4707 0.6418 -3.1241 27 6 3.6017 -1.1509 -0.0007 28 8 4.2312 -2.1966 -0.0012 29 6 2.1965 -1.1769 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3632 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6823 2.1486 0.0004 34 1 4.1104 2.1342 0.0088 35 1 6.0722 0.9382 0.5113 36 1 6.0926 -0.8418 0.5115 37 1 8.1757 0.0726 -0.9336 38 1 8.5835 -2.0254 -2.7898 39 1 7.2629 -1.7546 -3.9698 40 1 8.7449 -1.1562 -5.6719 41 1 9.9157 -2.1031 -4.7117 42 1 12.0643 0.5915 -3.8879 43 1 11.6272 -1.0856 -3.4817 44 1 11.5398 -0.7985 -6.2899 45 1 13.5740 -1.9098 -8.6887 46 1 9.4469 1.7300 -3.1840 47 1 10.0528 0.3190 -2.2610 48 1 1.6683 -2.1188 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278593929.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:09 Heat of formation + Delta-G solvation = -63.964807 kcal Electronic energy + Delta-G solvation = -27781.732040 eV Core-core repulsion = 23835.649157 eV Total energy + Delta-G solvation = -3946.082883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.52138 -40.85660 -39.26398 -38.10735 -36.53933 -36.16355 -34.90596 -32.99607 -31.46919 -30.54304 -30.12955 -29.18492 -27.57467 -26.05760 -24.65313 -23.98011 -22.92685 -21.91132 -21.72141 -20.52157 -19.12880 -18.70260 -18.51745 -18.46916 -17.26924 -17.01649 -16.73283 -16.60657 -16.30451 -16.11466 -15.43542 -15.16743 -15.14742 -15.05510 -14.80629 -14.49666 -14.28811 -14.16465 -13.65453 -13.43789 -13.35052 -13.30174 -13.03659 -12.92726 -12.86449 -12.80613 -12.52436 -12.46184 -12.17798 -12.11569 -11.87320 -11.75087 -11.54911 -11.32416 -11.28887 -11.09994 -10.91829 -10.57730 -10.13809 -8.98559 -8.98405 -7.94890 -5.23445 -0.11894 0.92084 1.43270 1.46613 1.48374 1.48736 1.57094 2.13680 2.56231 2.69690 3.38642 3.50104 3.56040 3.66451 3.69966 3.75467 3.85360 3.89997 4.09834 4.18435 4.18864 4.32275 4.34594 4.40620 4.43992 4.47344 4.54849 4.66809 4.77183 4.79003 4.82837 4.89880 4.90372 4.99358 5.10093 5.10848 5.12447 5.21904 5.24657 5.38386 5.44403 5.49559 5.50879 5.55732 5.66459 6.05316 6.27515 6.44623 6.96789 7.13690 7.33530 8.11653 8.33619 9.28830 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.036132 B = 0.001743 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.759380 B =16058.730351 C =16160.121850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.033 3.967 3 C -0.232 4.232 4 C 0.142 3.858 5 N -0.484 5.484 6 C 0.071 3.929 7 C 0.498 3.502 8 O -0.578 6.578 9 N -0.701 5.701 10 C 0.150 3.850 11 H 0.082 0.918 12 C -0.126 4.126 13 C -0.112 4.112 14 C -0.089 4.089 15 H 0.067 0.933 16 C 0.160 3.840 17 N -0.747 5.747 18 C -0.245 4.245 19 H 0.077 0.923 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.974 3.026 23 H -0.289 1.289 24 H -0.296 1.296 25 H -0.267 1.267 26 C -0.102 4.102 27 C 0.502 3.498 28 O -0.613 6.613 29 C -0.295 4.295 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.183 0.817 34 H 0.207 0.793 35 H 0.182 0.818 36 H 0.127 0.873 37 H 0.421 0.579 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.025 0.975 43 H 0.021 0.979 44 H 0.373 0.627 45 H 0.250 0.750 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.634 12.831 23.895 36.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.029 3.971 3 C -0.254 4.254 4 C 0.016 3.984 5 N -0.193 5.193 6 C -0.053 4.053 7 C 0.284 3.716 8 O -0.457 6.457 9 N -0.353 5.353 10 C 0.045 3.955 11 H 0.100 0.900 12 C -0.165 4.165 13 C -0.150 4.150 14 C -0.108 4.108 15 H 0.085 0.915 16 C 0.033 3.967 17 N -0.389 5.389 18 C -0.377 4.377 19 H 0.095 0.905 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.803 3.197 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.192 1.192 26 C -0.140 4.140 27 C 0.307 3.693 28 O -0.501 6.501 29 C -0.317 4.317 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.200 0.800 34 H 0.223 0.777 35 H 0.199 0.801 36 H 0.145 0.855 37 H 0.259 0.741 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.039 0.961 44 H 0.204 0.796 45 H 0.059 0.941 46 H 0.111 0.889 47 H 0.111 0.889 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -24.582 12.168 23.341 36.016 hybrid contribution 1.171 -1.116 -0.891 1.847 sum -23.411 11.052 22.449 34.267 Atomic orbital electron populations 1.21043 0.88148 1.04480 1.04349 1.20643 0.98463 0.92181 0.85791 1.21068 0.92617 0.99693 1.12064 1.22732 0.94358 0.89727 0.91594 1.45077 1.08081 1.07381 1.58715 1.22066 0.78950 1.10093 0.94235 1.21280 0.82917 0.75367 0.92030 1.90751 1.56443 1.50924 1.47597 1.45758 1.06478 1.74012 1.09047 1.21804 0.95649 0.95426 0.82648 0.89964 1.22678 0.97874 0.97723 0.98201 1.22058 0.96794 0.98093 0.98052 1.21770 0.93924 0.96560 0.98583 0.91489 1.20923 0.91937 0.96081 0.87719 1.42614 1.08668 1.79457 1.08169 1.19679 0.88061 1.34867 0.95093 0.90481 1.25594 1.02388 1.03429 0.95636 1.69826 1.36790 1.55281 1.00298 0.85125 0.80029 0.77878 0.76640 1.21593 1.22247 1.19167 1.22491 0.92895 1.01232 0.97433 1.17487 0.90263 0.82773 0.78738 1.90908 1.70235 1.32347 1.56616 1.21892 0.91743 1.00747 1.17306 0.88342 0.88723 0.91131 0.80011 0.77664 0.80078 0.85497 0.74094 0.91082 0.93374 0.92924 0.93078 0.95672 0.96100 0.79560 0.94096 0.88925 0.88867 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.03 71.24 0.71 -0.12 16 2 C 0.03 0.45 5.89 -19.82 -0.12 0.33 16 3 C -0.23 -2.04 9.71 22.08 0.21 -1.83 16 4 C 0.14 1.34 10.28 83.42 0.86 2.19 16 5 N -0.48 -8.43 2.07 -655.05 -1.36 -9.79 16 6 C 0.07 0.89 5.82 85.63 0.50 1.39 16 7 C 0.50 10.15 7.90 87.66 0.69 10.84 16 8 O -0.58 -17.93 16.12 -3.03 -0.05 -17.98 16 9 N -0.70 -11.52 5.19 -436.43 -2.27 -13.79 16 10 C 0.15 3.36 3.21 46.29 0.15 3.51 16 11 H 0.08 2.13 7.62 -2.39 -0.02 2.11 16 12 C -0.13 -3.55 6.53 31.74 0.21 -3.34 16 13 C -0.11 -3.68 6.19 31.39 0.19 -3.48 16 14 C -0.09 -2.74 2.96 -10.07 -0.03 -2.77 16 15 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 16 C 0.16 6.17 5.27 86.38 0.46 6.63 16 17 N -0.75 -38.31 5.39 -343.44 -1.85 -40.16 16 18 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 20 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 21 N -0.97 -60.60 13.06 21.65 0.28 -60.32 16 22 Si 0.97 46.65 29.55 68.60 2.03 48.67 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 24 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 26 C -0.10 -2.11 5.98 31.67 0.19 -1.92 16 27 C 0.50 13.37 7.40 84.82 0.63 14.00 16 28 O -0.61 -21.95 16.64 -5.51 -0.09 -22.04 16 29 C -0.30 -6.41 9.65 22.40 0.22 -6.20 16 30 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.09 0.30 8.10 -2.39 -0.02 0.28 16 32 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 33 H 0.18 0.24 8.06 -2.91 -0.02 0.21 16 34 H 0.21 -0.03 8.03 -2.91 -0.02 -0.05 16 35 H 0.18 0.01 8.01 -2.39 -0.02 -0.01 16 36 H 0.13 1.77 7.39 -2.39 -0.02 1.75 16 37 H 0.42 3.70 8.54 -92.71 -0.79 2.91 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.05 1.96 7.61 -2.39 -0.02 1.94 16 42 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.37 20.55 7.55 -92.71 -0.70 19.85 16 45 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 46 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 47 H 0.09 1.62 7.73 -2.39 -0.02 1.60 16 48 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -89.78 397.72 2.35 -87.43 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -0.52 Total: 25.86 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 6.18 Total: 2.12 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -5.19 Total: -124.05 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.14 Total: -40.03 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -89.78 2.35 -87.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278593929.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.461 kcal (2) G-P(sol) polarization free energy of solvation -89.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds