Wall clock time and date at job start Tue Mar 31 2020 18:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40196 * 120.36534 * 2 1 4 4 C 1.35352 * 119.94989 * 179.77237 * 3 2 1 5 5 N 1.35761 * 120.69677 * 0.51193 * 4 3 2 6 6 C 1.46500 * 119.62201 * 179.76538 * 5 4 3 7 7 C 1.50703 * 109.47026 * 269.72534 * 6 5 4 8 8 O 1.21282 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00154 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00007 * 179.97438 * 9 7 6 11 11 H 1.09003 * 110.01830 * 33.60839 * 10 9 7 12 12 C 1.53872 * 110.03419 * 272.16181 * 10 9 7 13 13 C 1.54266 * 106.60044 * 240.71605 * 12 10 9 14 14 C 1.54893 * 104.19500 * 23.61099 * 13 12 10 15 15 H 1.09000 * 110.75571 * 80.37081 * 14 13 12 16 16 C 1.53001 * 110.75349 * 203.74603 * 14 13 12 17 17 N 1.46501 * 109.46614 * 288.32551 * 16 14 13 18 18 C 1.36942 * 119.99828 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99818 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00208 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99673 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00149 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47070 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46993 * 119.99527 * 22 20 18 25 25 H 1.48490 * 109.47185 * 239.99951 * 22 20 18 26 26 C 1.54266 * 110.03172 * 154.99703 * 10 9 7 27 27 C 1.34655 * 120.75267 * 359.48180 * 5 4 3 28 28 O 1.22058 * 119.98836 * 180.27968 * 27 5 4 29 29 C 1.36393 * 120.37016 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.46859 * 269.97419 * 1 2 3 31 31 H 1.08993 * 109.47252 * 29.97410 * 1 2 3 32 32 H 1.08997 * 109.46793 * 149.97513 * 1 2 3 33 33 H 1.08003 * 120.02393 * 0.04581 * 3 2 1 34 34 H 1.08000 * 119.65159 * 180.27614 * 4 3 2 35 35 H 1.09004 * 109.47621 * 149.72382 * 6 5 4 36 36 H 1.08998 * 109.47544 * 29.72252 * 6 5 4 37 37 H 0.97002 * 120.00569 * 359.97438 * 9 7 6 38 38 H 1.09002 * 110.03208 * 359.97438 * 12 10 9 39 39 H 1.09000 * 110.03462 * 121.38228 * 12 10 9 40 40 H 1.09002 * 110.48438 * 142.28717 * 13 12 10 41 41 H 1.08998 * 110.48431 * 264.79545 * 13 12 10 42 42 H 1.09000 * 109.47234 * 48.32327 * 16 14 13 43 43 H 1.08996 * 109.46795 * 168.32836 * 16 14 13 44 44 H 0.96997 * 120.00825 * 0.02562 * 17 16 14 45 45 H 0.97002 * 119.99547 * 179.97438 * 21 20 18 46 46 H 1.09001 * 110.48620 * 214.35535 * 26 10 9 47 47 H 1.09004 * 110.48798 * 336.99369 * 26 10 9 48 48 H 1.08000 * 120.35003 * 359.95328 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1998 0.0047 5 7 4.2538 0.0275 -0.0011 6 6 5.7187 0.0444 -0.0011 7 6 6.2210 0.0503 -1.4219 8 8 5.4329 0.0408 -2.3437 9 7 7.5460 0.0650 -1.6682 10 6 8.0342 0.0702 -3.0495 11 1 7.3481 0.6293 -3.6857 12 6 8.1747 -1.3730 -3.5643 13 6 9.6627 -1.5713 -3.9198 14 6 10.4023 -0.5156 -3.0610 15 1 10.5266 -0.8687 -2.0373 16 6 11.7550 -0.1623 -3.6825 17 7 12.6781 -1.2874 -3.5147 18 6 13.9577 -1.2006 -3.9948 19 1 14.2861 -0.3029 -4.4975 20 6 14.8323 -2.2669 -3.8365 21 7 14.4318 -3.3611 -3.2243 22 14 16.5775 -2.1488 -4.4920 23 1 16.7768 -0.8243 -5.1333 24 1 17.5389 -2.3050 -3.3710 25 1 16.8043 -3.2227 -5.4921 26 6 9.4418 0.6986 -3.1100 27 6 3.6017 -1.1507 -0.0010 28 8 4.2313 -2.1964 -0.0011 29 6 2.1966 -1.1768 -0.0005 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3633 0.8901 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6821 2.1486 0.0007 34 1 4.1103 2.1345 0.0092 35 1 6.0924 -0.8414 0.5128 36 1 6.0718 0.9384 0.5128 37 1 8.1764 0.0723 -0.9310 38 1 7.8800 -2.0773 -2.7863 39 1 7.5562 -1.5152 -4.4505 40 1 9.9881 -2.5766 -3.6522 41 1 9.8291 -1.3873 -4.9811 42 1 11.6239 0.0450 -4.7445 43 1 12.1629 0.7192 -3.1879 44 1 12.3831 -2.0938 -3.0637 45 1 15.0429 -4.1064 -3.1140 46 1 9.5731 1.2515 -4.0401 47 1 9.6061 1.3499 -2.2515 48 1 1.6684 -2.1188 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278593930.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:14 Heat of formation + Delta-G solvation = -36.282423 kcal Electronic energy + Delta-G solvation = -27886.202144 eV Core-core repulsion = 23941.319659 eV Total energy + Delta-G solvation = -3944.882485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.79091 -39.96567 -38.05181 -37.28467 -35.58098 -34.82169 -33.42416 -31.30014 -30.74535 -29.78326 -28.79442 -28.19706 -26.72114 -24.39747 -24.03296 -22.19925 -22.18685 -21.07916 -20.17779 -19.70727 -17.95226 -17.82345 -17.75698 -17.05064 -16.34743 -16.20153 -15.54486 -15.40803 -14.94294 -14.58619 -14.56808 -14.43258 -14.10168 -13.94485 -13.64808 -13.40818 -13.13531 -12.97772 -12.84254 -12.74686 -12.50348 -12.24240 -12.10611 -11.97854 -11.81925 -11.18890 -11.10850 -10.87735 -10.78818 -10.54129 -10.48914 -10.31556 -10.23638 -10.20622 -9.93953 -9.84610 -9.66432 -9.21214 -8.86175 -8.26724 -6.89924 -5.75566 -3.03833 0.50549 1.59325 2.13521 2.30713 2.94836 3.42825 3.43626 3.49098 3.51493 4.12020 4.22212 4.33155 4.40127 4.57720 4.62508 4.69473 4.72774 4.76057 4.87483 4.98546 5.03160 5.12993 5.19802 5.42649 5.48636 5.53366 5.59515 5.61418 5.66717 5.69262 5.74328 5.83848 5.87174 6.04567 6.06125 6.11808 6.19254 6.24583 6.32878 6.44775 6.58591 6.60138 6.75523 6.79967 6.92861 7.24177 7.71183 7.78895 7.93924 8.43617 9.54733 10.13759 10.48146 11.47424 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.033857 B = 0.001812 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.802550 B =15447.980907 C =15741.554893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.014 3.986 3 C -0.230 4.230 4 C 0.144 3.856 5 N -0.482 5.482 6 C 0.069 3.931 7 C 0.501 3.499 8 O -0.529 6.529 9 N -0.715 5.715 10 C 0.142 3.858 11 H 0.088 0.912 12 C -0.134 4.134 13 C -0.112 4.112 14 C -0.097 4.097 15 H 0.075 0.925 16 C 0.161 3.839 17 N -0.732 5.732 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.123 4.123 27 C 0.521 3.479 28 O -0.549 6.549 29 C -0.247 4.247 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.131 0.869 36 H 0.122 0.878 37 H 0.403 0.597 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.019 0.981 43 H 0.017 0.983 44 H 0.384 0.616 45 H 0.254 0.746 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.638 13.444 9.826 32.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.011 3.989 3 C -0.253 4.253 4 C 0.017 3.983 5 N -0.192 5.192 6 C -0.057 4.057 7 C 0.285 3.715 8 O -0.405 6.405 9 N -0.367 5.367 10 C 0.038 3.962 11 H 0.106 0.894 12 C -0.173 4.173 13 C -0.150 4.150 14 C -0.116 4.116 15 H 0.094 0.906 16 C 0.033 3.967 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.161 4.161 27 C 0.324 3.676 28 O -0.431 6.431 29 C -0.268 4.268 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.163 0.837 34 H 0.178 0.822 35 H 0.149 0.851 36 H 0.140 0.860 37 H 0.237 0.763 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.037 0.963 43 H 0.035 0.965 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -27.622 12.818 9.055 31.769 hybrid contribution 1.272 -0.226 0.103 1.296 sum -26.350 12.592 9.158 30.606 Atomic orbital electron populations 1.20927 0.90349 1.03619 1.03054 1.20205 0.96789 0.92658 0.89282 1.20518 0.92344 0.98925 1.13498 1.21876 0.93625 0.89442 0.93326 1.45026 1.07122 1.07312 1.59782 1.21824 0.79866 1.07468 0.96545 1.20644 0.83129 0.76730 0.91029 1.90753 1.55231 1.48796 1.45679 1.46121 1.06266 1.74706 1.09623 1.21696 0.95749 0.97137 0.81585 0.89410 1.22606 0.97835 0.95636 1.01186 1.22359 0.92561 0.99925 1.00171 1.22327 0.95016 0.94345 0.99927 0.90638 1.20644 0.87817 0.91554 0.96678 1.42356 1.09907 1.15340 1.69982 1.19288 0.88186 0.99749 1.29763 0.91192 1.24742 0.98461 0.96387 1.01512 1.69674 1.35258 1.05356 1.47923 0.86122 0.84864 0.77170 0.78077 1.20588 1.21911 1.21891 1.22674 0.92544 0.98055 1.02835 1.17097 0.89380 0.82436 0.78704 1.90977 1.69090 1.30233 1.52793 1.21927 0.92236 0.99613 1.13063 0.90109 0.90753 0.90786 0.83737 0.82199 0.85114 0.86015 0.76269 0.91509 0.91547 0.91105 0.91351 0.96282 0.96532 0.78279 0.93595 0.89953 0.91071 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 10.03 36.01 0.36 -0.19 16 2 C 0.01 0.11 5.89 -104.55 -0.62 -0.51 16 3 C -0.23 -1.42 9.71 -39.88 -0.39 -1.81 16 4 C 0.14 0.96 10.28 -16.84 -0.17 0.78 16 5 N -0.48 -4.69 2.07 -121.06 -0.25 -4.94 16 6 C 0.07 0.55 5.82 -5.19 -0.03 0.52 16 7 C 0.50 5.64 7.89 -10.99 -0.09 5.56 16 8 O -0.53 -8.23 16.09 5.56 0.09 -8.14 16 9 N -0.71 -7.09 4.93 -52.72 -0.26 -7.35 16 10 C 0.14 1.68 3.25 -66.81 -0.22 1.46 16 11 H 0.09 1.11 7.57 -51.93 -0.39 0.71 16 12 C -0.13 -1.83 6.59 -25.61 -0.17 -2.00 16 13 C -0.11 -1.74 6.20 -25.07 -0.16 -1.89 16 14 C -0.10 -1.48 2.91 -88.63 -0.26 -1.73 16 15 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 16 C 0.16 3.14 5.70 -4.04 -0.02 3.12 16 17 N -0.73 -18.42 5.52 -59.91 -0.33 -18.75 16 18 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 19 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 22 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 C -0.12 -1.42 5.88 -25.07 -0.15 -1.56 16 27 C 0.52 6.79 7.40 -15.45 -0.11 6.68 16 28 O -0.55 -9.31 16.64 4.87 0.08 -9.23 16 29 C -0.25 -2.58 9.65 -39.38 -0.38 -2.96 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.25 8.10 -51.93 -0.42 -0.17 16 32 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 33 H 0.14 0.49 8.06 -52.48 -0.42 0.06 16 34 H 0.16 0.48 8.03 -52.49 -0.42 0.06 16 35 H 0.13 1.10 7.39 -51.93 -0.38 0.71 16 36 H 0.12 0.40 8.01 -51.93 -0.42 -0.02 16 37 H 0.40 2.99 8.58 -40.82 -0.35 2.64 16 38 H 0.07 0.97 7.92 -51.93 -0.41 0.56 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.07 1.09 7.94 -51.93 -0.41 0.68 16 42 H 0.02 0.38 7.99 -51.93 -0.41 -0.03 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.38 10.17 7.67 -40.82 -0.31 9.86 16 45 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.08 0.93 8.05 -51.93 -0.42 0.52 16 47 H 0.07 0.71 7.99 -51.93 -0.41 0.29 16 48 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 398.15 15.07 6.00 6.00 Total: -1.00 -38.13 398.15 -9.31 -47.43 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.69 Total: 7.10 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.64 Total: -1.94 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.12 Total: -58.73 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.17 Total: -17.37 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.13 -9.31 -47.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278593930.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.152 kcal (2) G-P(sol) polarization free energy of solvation -38.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds