Wall clock time and date at job start Tue Mar 31 2020 17:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38356 * 119.40124 * 2 1 4 4 C 1.38345 * 119.45500 * 179.74440 * 3 2 1 5 5 C 1.50695 * 120.82403 * 180.25683 * 4 3 2 6 6 C 1.39988 * 118.34850 * 0.47386 * 4 3 2 7 7 C 1.47521 * 120.59449 * 179.80343 * 6 4 3 8 8 O 1.21597 * 120.00169 * 269.71772 * 7 6 4 9 9 N 1.34775 * 120.00285 * 89.72539 * 7 6 4 10 10 C 1.47029 * 125.64566 * 0.03594 * 9 7 6 11 11 C 1.54364 * 107.28613 * 181.05822 * 10 9 7 12 12 C 1.55159 * 102.92491 * 22.13842 * 11 10 9 13 13 H 1.09008 * 111.00115 * 82.63854 * 12 11 10 14 14 C 1.52992 * 111.00782 * 206.45019 * 12 11 10 15 15 C 1.53004 * 109.47319 * 181.82000 * 14 12 11 16 16 N 1.46499 * 109.47198 * 180.02562 * 15 14 12 17 17 C 1.36931 * 120.00122 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00098 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00429 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99535 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 180.27849 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72427 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71963 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72083 * 21 19 17 25 25 C 1.47420 * 125.65429 * 179.97438 * 9 7 6 26 26 C 1.40281 * 118.80666 * 359.52962 * 6 4 3 27 27 O 1.35422 * 119.79942 * 180.24788 * 26 6 4 28 28 N 1.31881 * 119.41077 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47078 * 270.01576 * 1 2 3 30 30 H 1.08993 * 109.47667 * 30.02094 * 1 2 3 31 31 H 1.09006 * 109.46630 * 150.02297 * 1 2 3 32 32 H 1.08000 * 120.27638 * 0.02562 * 3 2 1 33 33 H 1.08994 * 109.47183 * 270.22390 * 5 4 3 34 34 H 1.09004 * 109.47472 * 30.22804 * 5 4 3 35 35 H 1.09002 * 109.47239 * 150.22885 * 5 4 3 36 36 H 1.08999 * 109.88437 * 300.44503 * 10 9 7 37 37 H 1.08999 * 109.87636 * 61.45434 * 10 9 7 38 38 H 1.08999 * 110.71092 * 263.79517 * 11 10 9 39 39 H 1.09002 * 110.75594 * 140.50767 * 11 10 9 40 40 H 1.09000 * 109.47364 * 61.82019 * 14 12 11 41 41 H 1.08998 * 109.47610 * 301.82082 * 14 12 11 42 42 H 1.08995 * 109.46638 * 60.00097 * 15 14 12 43 43 H 1.08998 * 109.46846 * 300.00550 * 15 14 12 44 44 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 45 45 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 46 46 H 1.09003 * 110.36391 * 37.06293 * 25 9 7 47 47 H 1.09003 * 110.36696 * 274.74429 * 25 9 7 48 48 H 0.96701 * 114.00134 * 90.00397 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1862 1.2054 0.0000 4 6 3.5697 1.2067 0.0054 5 6 4.3406 2.5015 0.0113 6 6 4.2356 -0.0247 0.0005 7 6 5.7097 -0.0811 0.0015 8 8 6.3180 -0.1048 -1.0511 9 7 6.3824 -0.1065 1.1691 10 6 5.7756 -0.0836 2.5082 11 6 6.9285 -0.0998 3.5345 12 6 8.1306 0.4389 2.7146 13 1 8.1233 1.5284 2.6804 14 6 9.4551 -0.0802 3.2776 15 6 10.6165 0.5072 2.4730 16 7 11.8847 0.0097 3.0117 17 6 13.0692 0.4029 2.4483 18 1 13.0685 1.0801 1.6070 19 6 14.2709 -0.0689 2.9583 20 7 14.2718 -0.8939 3.9840 21 14 15.8870 0.4736 2.1946 22 1 17.0157 -0.1617 2.9210 23 1 15.9227 0.0628 0.7679 24 1 16.0073 1.9508 2.2876 25 6 7.8482 -0.1630 1.3153 26 6 3.4759 -1.2040 0.0004 27 8 4.0993 -2.4062 0.0008 28 7 2.1547 -1.1488 0.0005 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8897 -0.5141 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6410 2.1376 0.0004 33 1 4.5270 2.8181 -1.0148 34 1 3.7616 3.2668 0.5282 35 1 5.2910 2.3562 0.5250 36 1 5.1832 0.8231 2.6313 37 1 5.1430 -0.9608 2.6434 38 1 7.1221 -1.1150 3.8808 39 1 6.7078 0.5596 4.3739 40 1 9.4783 -1.1677 3.2078 41 1 9.5484 0.2189 4.3215 42 1 10.5933 1.5947 2.5428 43 1 10.5232 0.2081 1.4291 44 1 11.8854 -0.5977 3.7680 45 1 15.1116 -1.2234 4.3407 46 1 8.3299 0.4343 0.5411 47 1 8.1945 -1.1956 1.2694 48 1 4.2801 -2.7552 0.8843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280139075.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:16 Heat of formation + Delta-G solvation = -36.087765 kcal Electronic energy + Delta-G solvation = -28457.835744 eV Core-core repulsion = 24512.961700 eV Total energy + Delta-G solvation = -3944.874044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.38776 -39.83034 -37.85381 -37.73466 -35.17898 -34.62940 -32.99407 -32.18935 -31.06656 -29.62694 -28.99141 -28.05062 -26.97001 -24.63914 -23.54694 -23.07319 -21.94788 -21.31051 -20.29664 -19.82125 -18.84522 -17.77330 -17.62187 -17.09052 -16.46226 -15.99843 -15.75414 -15.03120 -14.67712 -14.60246 -14.39667 -14.04330 -13.77987 -13.59968 -13.54693 -13.44332 -13.35945 -13.11153 -12.95031 -12.84127 -12.68334 -12.42096 -12.30064 -12.24544 -12.02982 -11.74017 -11.41969 -11.10295 -10.82792 -10.70487 -10.56502 -10.44667 -10.38382 -10.01881 -9.96704 -9.77148 -9.66391 -9.20986 -8.86157 -8.85023 -6.90946 -5.75191 -3.03766 0.36304 0.65984 2.30201 2.67238 2.97440 3.18288 3.45906 3.49942 3.51183 3.95556 4.07022 4.15662 4.37249 4.51925 4.54156 4.62581 4.68547 4.74042 4.86172 4.94508 5.00035 5.09178 5.11020 5.13444 5.17838 5.32473 5.38476 5.48928 5.50782 5.56399 5.59508 5.61655 5.67543 5.74540 5.77308 5.86856 5.98990 6.03197 6.07708 6.21074 6.34560 6.35787 6.83079 6.87046 7.02462 7.24323 7.43962 7.71387 7.89201 8.44057 9.54950 10.12970 10.47367 11.47710 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025855 B = 0.002081 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.718887 B =13453.899005 C =13556.216814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.167 3.833 3 C -0.186 4.186 4 C 0.011 3.989 5 C -0.125 4.125 6 C -0.194 4.194 7 C 0.588 3.412 8 O -0.520 6.520 9 N -0.612 5.612 10 C 0.102 3.898 11 C -0.127 4.127 12 C -0.093 4.093 13 H 0.086 0.914 14 C -0.115 4.115 15 C 0.151 3.849 16 N -0.734 5.734 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.291 1.291 23 H -0.286 1.286 24 H -0.286 1.286 25 C 0.109 3.891 26 C 0.354 3.646 27 O -0.472 6.472 28 N -0.505 5.505 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.017 0.983 43 H 0.019 0.981 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.419 4.552 -1.930 31.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.029 3.971 3 C -0.206 4.206 4 C 0.003 3.997 5 C -0.181 4.181 6 C -0.201 4.201 7 C 0.374 3.626 8 O -0.395 6.395 9 N -0.346 5.346 10 C -0.021 4.021 11 C -0.165 4.165 12 C -0.113 4.113 13 H 0.104 0.896 14 C -0.153 4.153 15 C 0.023 3.977 16 N -0.378 5.378 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.212 1.212 24 H -0.213 1.213 25 C -0.012 4.012 26 C 0.175 3.825 27 O -0.279 6.279 28 N -0.226 5.226 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.163 0.837 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.035 0.965 43 H 0.037 0.963 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.102 0.898 47 H 0.094 0.906 48 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -31.429 3.853 -3.284 31.835 hybrid contribution 1.445 0.575 0.341 1.592 sum -29.985 4.428 -2.944 30.453 Atomic orbital electron populations 1.20807 0.88039 1.04015 1.03566 1.21193 0.97027 0.87024 0.91819 1.21787 0.93539 0.99684 1.05562 1.20271 0.93699 0.94151 0.91579 1.20954 1.00146 0.93021 1.03992 1.20785 0.94692 0.94199 1.10392 1.17389 0.85839 0.76503 0.82828 1.90857 1.69070 1.49086 1.30516 1.48531 1.08236 1.72704 1.05176 1.22042 0.96611 1.01264 0.82163 1.22732 0.93731 1.02903 0.97153 1.22352 0.94880 1.00719 0.93339 0.89602 1.21685 0.92407 1.00902 1.00283 1.20679 0.85603 0.96001 0.95375 1.42349 1.00207 1.56544 1.38707 1.19196 0.84313 1.22406 1.11139 0.91247 1.24749 0.97735 1.00063 0.98564 1.69653 1.25769 1.36524 1.26403 0.86252 0.83458 0.77969 0.78432 1.21679 1.21239 1.21279 1.22477 0.78628 1.02009 0.98097 1.18971 0.86344 0.84409 0.92801 1.84777 1.76632 1.32641 1.33848 1.67058 1.09010 1.30454 1.16032 0.89814 0.90145 0.90057 0.83702 0.89434 0.90002 0.90661 0.91525 0.92070 0.90031 0.89740 0.91518 0.91225 0.96472 0.96277 0.78327 0.93496 0.89831 0.90631 0.73876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.16 36.01 0.37 -0.14 16 2 C 0.17 1.38 6.78 -82.53 -0.56 0.82 16 3 C -0.19 -1.34 9.41 -39.50 -0.37 -1.71 16 4 C 0.01 0.10 5.95 -103.93 -0.62 -0.52 16 5 C -0.12 -0.92 9.69 36.00 0.35 -0.57 16 6 C -0.19 -2.24 4.84 -104.69 -0.51 -2.75 16 7 C 0.59 8.07 5.45 -12.48 -0.07 8.00 16 8 O -0.52 -9.46 17.36 5.28 0.09 -9.37 16 9 N -0.61 -7.04 3.33 -171.71 -0.57 -7.61 16 10 C 0.10 0.84 6.47 -3.04 -0.02 0.82 16 11 C -0.13 -1.06 6.42 -24.87 -0.16 -1.22 16 12 C -0.09 -1.05 3.04 -88.47 -0.27 -1.32 16 13 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 14 C -0.11 -1.67 4.84 -26.73 -0.13 -1.80 16 15 C 0.15 2.97 6.14 -4.04 -0.02 2.94 16 16 N -0.73 -18.70 5.60 -59.91 -0.34 -19.04 16 17 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 20 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 21 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 C 0.11 1.40 5.71 -2.52 -0.01 1.38 16 26 C 0.35 4.14 7.77 -16.61 -0.13 4.01 16 27 O -0.47 -5.36 13.01 -17.96 -0.23 -5.60 16 28 N -0.51 -5.55 10.28 -9.21 -0.09 -5.65 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.22 8.07 -51.93 -0.42 -0.20 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 35 H 0.07 0.65 7.19 -51.93 -0.37 0.28 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.99 8.03 -51.93 -0.42 0.58 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.39 7.59 -51.93 -0.39 -0.01 16 44 H 0.38 10.16 7.67 -40.82 -0.31 9.85 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.08 1.21 8.00 -51.93 -0.42 0.80 16 47 H 0.08 1.02 7.96 -51.93 -0.41 0.60 16 48 H 0.40 2.60 9.06 45.56 0.41 3.01 16 LS Contribution 398.86 15.07 6.01 6.01 Total: -1.00 -36.90 398.86 -8.78 -45.68 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.94 Total: 5.19 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.40 Total: 0.44 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.28 Total: -60.04 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.14 Total: -14.96 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.90 -8.78 -45.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280139075.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.590 kcal (2) G-P(sol) polarization free energy of solvation -36.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds