Wall clock time and date at job start Tue Mar 31 2020 17:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38663 * 120.79041 * 2 1 4 4 C 1.38191 * 119.16441 * 179.97438 * 3 2 1 5 5 N 1.31888 * 120.76166 * 0.02562 * 4 3 2 6 6 C 1.31850 * 121.72646 * 359.97438 * 5 4 3 7 7 C 1.38228 * 120.76434 * 359.74574 * 6 5 4 8 8 C 1.50703 * 120.42081 * 180.26601 * 7 6 5 9 9 C 1.50695 * 109.46813 * 265.26515 * 8 7 6 10 10 O 1.21277 * 120.00163 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99562 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99622 * 175.59878 * 11 9 8 13 13 C 1.53005 * 109.46104 * 300.33859 * 12 11 9 14 14 O 1.42902 * 109.47083 * 305.35100 * 13 12 11 15 15 C 1.53045 * 109.45978 * 180.36693 * 12 11 9 16 16 C 1.53164 * 109.32714 * 301.36203 * 15 12 11 17 17 N 1.46930 * 108.76481 * 305.35495 * 16 15 12 18 18 C 1.36941 * 120.62824 * 233.63062 * 17 16 15 19 19 H 1.07998 * 119.99668 * 141.90504 * 18 17 16 20 20 C 1.38811 * 119.99863 * 321.91318 * 18 17 16 21 21 N 1.31611 * 120.00340 * 354.48991 * 20 18 17 22 22 Si 1.86802 * 119.99741 * 174.49555 * 20 18 17 23 23 H 1.48501 * 109.47206 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47327 * 119.99588 * 22 20 18 25 25 H 1.48498 * 109.46999 * 239.99937 * 22 20 18 26 26 C 1.46918 * 118.74200 * 53.60797 * 17 16 15 27 27 C 1.53040 * 109.45870 * 60.31167 * 12 11 9 28 28 H 1.09003 * 109.46737 * 90.00022 * 1 2 3 29 29 H 1.08998 * 109.47512 * 209.99863 * 1 2 3 30 30 H 1.08997 * 109.47439 * 330.00236 * 1 2 3 31 31 H 1.08001 * 120.42227 * 359.95089 * 3 2 1 32 32 H 1.08001 * 119.61802 * 179.97438 * 4 3 2 33 33 H 1.08000 * 119.61848 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46948 * 25.26356 * 8 7 6 35 35 H 1.08999 * 109.47087 * 145.25992 * 8 7 6 36 36 H 0.96997 * 120.00572 * 355.60367 * 11 9 8 37 37 H 1.08998 * 109.46831 * 65.34648 * 13 12 11 38 38 H 1.08997 * 109.46781 * 185.35119 * 13 12 11 39 39 H 0.96699 * 113.99802 * 179.97438 * 14 13 12 40 40 H 1.09002 * 109.49280 * 61.29583 * 15 12 11 41 41 H 1.08999 * 109.49635 * 181.39210 * 15 12 11 42 42 H 1.09001 * 109.58947 * 185.57236 * 16 15 12 43 43 H 1.09001 * 109.59437 * 65.13291 * 16 15 12 44 44 H 0.97003 * 120.00661 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.58955 * 186.60112 * 26 17 16 46 46 H 1.09006 * 109.70288 * 66.24578 * 26 17 16 47 47 H 1.09000 * 109.49104 * 178.60387 * 27 12 11 48 48 H 1.09000 * 109.49889 * 298.70215 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5982 1.1520 0.0005 5 7 4.2403 0.0000 0.0005 6 6 3.5983 -1.1517 0.0005 7 6 2.2166 -1.1909 0.0058 8 6 1.4907 -2.5116 0.0118 9 6 1.1408 -2.8988 -1.4019 10 8 1.4498 -2.1735 -2.3235 11 7 0.4842 -4.0511 -1.6421 12 6 0.0589 -4.3815 -3.0045 13 6 -0.8867 -3.2952 -3.5209 14 8 -1.9695 -3.1305 -2.6031 15 6 -0.6669 -5.7289 -2.9994 16 6 0.2708 -6.8078 -2.4494 17 7 1.5150 -6.7958 -3.2310 18 6 1.9840 -7.9430 -3.8136 19 1 2.4428 -7.9038 -4.7905 20 6 1.8695 -9.1560 -3.1486 21 7 1.4102 -9.1898 -1.9157 22 14 2.3675 -10.7405 -4.0036 23 1 2.8477 -10.4332 -5.3748 24 1 3.4540 -11.3979 -3.2339 25 1 1.1961 -11.6498 -4.0820 26 6 2.2460 -5.5297 -3.3761 27 6 1.2858 -4.4648 -3.9155 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6967 2.1377 -0.0008 32 1 4.1583 2.0753 0.0001 33 1 4.1585 -2.0750 0.0001 34 1 2.1319 -3.2766 0.4499 35 1 0.5779 -2.4218 0.6006 36 1 0.2933 -4.6616 -0.9129 37 1 -0.3433 -2.3549 -3.6141 38 1 -1.2776 -3.5871 -4.4956 39 1 -2.6097 -2.4556 -2.8672 40 1 -1.5535 -5.6621 -2.3688 41 1 -0.9619 -5.9871 -4.0165 42 1 -0.2054 -7.7845 -2.5356 43 1 0.4946 -6.5990 -1.4033 44 1 1.3298 -10.0376 -1.4510 45 1 3.0730 -5.6630 -4.0735 46 1 2.6327 -5.2154 -2.4066 47 1 0.9723 -4.7350 -4.9239 48 1 1.7892 -3.4983 -3.9371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281808675.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:10 Heat of formation + Delta-G solvation = -32.540627 kcal Electronic energy + Delta-G solvation = -30176.987142 eV Core-core repulsion = 26232.266914 eV Total energy + Delta-G solvation = -3944.720228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.67997 -39.83419 -37.51856 -36.12172 -34.44322 -33.97402 -32.63047 -31.86439 -30.39965 -29.94107 -28.45019 -27.32076 -26.67086 -23.88442 -23.06007 -22.33042 -22.07284 -20.98357 -20.13850 -18.71816 -17.18640 -17.10409 -16.82837 -16.58486 -16.45833 -15.46551 -14.97507 -14.91104 -14.73006 -14.44301 -14.05640 -13.91867 -13.52643 -13.43931 -13.24419 -13.11724 -12.97253 -12.84730 -12.74339 -12.59722 -12.46576 -11.79754 -11.77460 -11.46122 -11.40807 -11.21898 -10.95190 -10.81380 -10.39329 -10.29121 -10.06842 -9.89712 -9.80811 -9.59281 -9.47945 -9.46468 -9.18310 -8.86409 -8.56885 -8.49900 -6.52335 -5.82390 -3.36259 1.07595 1.23733 2.94687 3.34218 3.42319 3.44380 3.45416 3.85700 4.37616 4.41886 4.46933 4.58960 4.62166 4.81899 4.84993 5.01188 5.26242 5.30577 5.31886 5.35615 5.37298 5.45441 5.51109 5.54387 5.57201 5.64556 5.72697 5.76729 5.87294 5.94694 6.01671 6.09876 6.28963 6.30040 6.33270 6.58474 6.59186 6.65731 6.68747 6.83966 6.95602 7.06655 7.27594 7.57467 7.73650 7.78962 7.94075 7.96780 8.50300 8.58175 9.21886 9.80316 10.43248 11.25681 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016688 B = 0.003303 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.454176 B = 8476.197180 C = 9415.643492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.026 4.026 3 C -0.177 4.177 4 C 0.094 3.906 5 N -0.489 5.489 6 C 0.116 3.884 7 C -0.110 4.110 8 C -0.105 4.105 9 C 0.522 3.478 10 O -0.542 6.542 11 N -0.698 5.698 12 C 0.196 3.804 13 C 0.065 3.935 14 O -0.566 6.566 15 C -0.143 4.143 16 C 0.177 3.823 17 N -0.591 5.591 18 C -0.257 4.257 19 H 0.061 0.939 20 C 0.012 3.988 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.289 1.289 26 C 0.155 3.845 27 C -0.145 4.145 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.131 0.869 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.402 0.598 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.369 0.631 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.018 0.982 44 H 0.254 0.746 45 H 0.052 0.948 46 H 0.016 0.984 47 H 0.062 0.938 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.312 18.031 4.893 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.034 4.034 3 C -0.197 4.197 4 C -0.062 4.062 5 N -0.198 5.198 6 C -0.041 4.041 7 C -0.112 4.112 8 C -0.145 4.145 9 C 0.308 3.692 10 O -0.420 6.420 11 N -0.349 5.349 12 C 0.110 3.890 13 C -0.014 4.014 14 O -0.370 6.370 15 C -0.183 4.183 16 C 0.051 3.949 17 N -0.314 5.314 18 C -0.387 4.387 19 H 0.078 0.922 20 C -0.188 4.188 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.216 1.216 26 C 0.028 3.972 27 C -0.185 4.185 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.149 0.851 32 H 0.169 0.831 33 H 0.171 0.829 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.237 0.763 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.214 0.786 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.036 0.964 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.034 0.966 47 H 0.081 0.919 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.875 17.906 4.646 18.900 hybrid contribution -1.091 -0.759 -0.408 1.390 sum -4.965 17.147 4.238 18.347 Atomic orbital electron populations 1.20850 0.90471 1.02897 1.03155 1.20111 0.96605 0.92441 0.94288 1.21945 0.95624 0.98348 1.03764 1.22678 0.91746 0.96217 0.95571 1.67675 1.41109 0.98433 1.12567 1.22635 0.90968 0.96303 0.94210 1.20175 0.94894 0.94296 1.01879 1.20651 1.02186 0.95402 0.96293 1.20173 0.77472 0.81220 0.90352 1.90619 1.53644 1.52310 1.45447 1.45917 1.57462 1.21006 1.10519 1.20259 0.93133 0.93793 0.81836 1.22721 0.87707 0.99543 0.91405 1.86485 1.38018 1.62180 1.50317 1.22470 0.98979 0.94455 1.02385 1.20685 0.85588 0.96371 0.92270 1.43945 1.22084 1.04297 1.61025 1.19158 1.36102 0.85203 0.98211 0.92151 1.25336 0.99584 0.98816 0.95033 1.69940 1.49244 1.24916 1.10448 0.86231 0.77979 0.83573 0.79041 1.20180 1.21541 1.21593 1.20793 0.92886 0.86230 0.97253 1.22412 0.96672 1.01215 0.98205 0.90258 0.90926 0.91335 0.85135 0.83097 0.82896 0.87736 0.87822 0.76314 0.92235 0.93660 0.78584 0.92004 0.91465 0.89994 0.96437 0.93640 0.92974 0.96617 0.91939 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.68 36.01 0.35 -0.72 16 2 C -0.03 -0.30 5.92 -104.32 -0.62 -0.92 16 3 C -0.18 -1.85 9.82 -39.44 -0.39 -2.23 16 4 C 0.09 1.07 11.18 -17.54 -0.20 0.87 16 5 N -0.49 -6.74 10.36 -13.25 -0.14 -6.88 16 6 C 0.12 1.55 10.84 -17.55 -0.19 1.36 16 7 C -0.11 -1.37 4.39 -104.48 -0.46 -1.83 16 8 C -0.10 -1.21 5.39 -29.04 -0.16 -1.36 16 9 C 0.52 7.71 7.24 -10.99 -0.08 7.63 16 10 O -0.54 -9.46 12.33 5.56 0.07 -9.39 16 11 N -0.70 -10.68 3.86 -47.56 -0.18 -10.86 16 12 C 0.20 3.25 0.44 -131.77 -0.06 3.19 16 13 C 0.06 0.95 5.63 37.16 0.21 1.15 16 14 O -0.57 -7.41 12.94 -35.23 -0.46 -7.86 16 15 C -0.14 -2.61 4.87 -26.62 -0.13 -2.74 16 16 C 0.18 3.95 4.93 -3.72 -0.02 3.93 16 17 N -0.59 -14.36 2.95 -172.34 -0.51 -14.87 16 18 C -0.26 -6.94 9.51 -15.06 -0.14 -7.08 16 19 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 20 C 0.01 0.32 5.13 -17.43 -0.09 0.23 16 21 N -0.90 -25.34 11.29 55.49 0.63 -24.71 16 22 Si 0.90 21.36 29.56 -169.99 -5.02 16.34 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 26 C 0.15 3.31 6.26 -3.71 -0.02 3.29 16 27 C -0.15 -2.67 4.67 -26.61 -0.12 -2.80 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.62 6.16 -51.93 -0.32 0.30 16 30 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.10 1.08 8.06 -51.93 -0.42 0.66 16 35 H 0.10 0.98 6.28 -51.93 -0.33 0.65 16 36 H 0.40 5.94 7.26 -40.82 -0.30 5.64 16 37 H 0.06 0.93 6.45 -51.93 -0.34 0.59 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.37 3.19 9.12 45.56 0.42 3.60 16 40 H 0.06 1.06 7.80 -51.93 -0.40 0.66 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.08 2.09 6.48 -51.93 -0.34 1.75 16 43 H 0.02 0.40 6.93 -51.93 -0.36 0.04 16 44 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 46 H 0.02 0.35 7.74 -51.93 -0.40 -0.05 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.08 1.44 6.09 -51.93 -0.32 1.13 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -32.56 377.80 -8.47 -41.04 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -6.44 Total: 9.53 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -2.11 Total: 1.98 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.20 Total: -57.33 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.39 Total: -17.26 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.56 -8.47 -41.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281808675.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.499 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds