Wall clock time and date at job start Tue Mar 31 2020 17:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38663 * 120.79041 * 2 1 4 4 C 1.38191 * 119.16441 * 179.97438 * 3 2 1 5 5 N 1.31888 * 120.76166 * 0.02562 * 4 3 2 6 6 C 1.31850 * 121.72646 * 359.97438 * 5 4 3 7 7 C 1.38228 * 120.76434 * 359.74574 * 6 5 4 8 8 C 1.50703 * 120.42081 * 180.26601 * 7 6 5 9 9 C 1.50695 * 109.46813 * 265.26515 * 8 7 6 10 10 O 1.21277 * 120.00163 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99562 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99622 * 175.59878 * 11 9 8 13 13 C 1.53005 * 109.46104 * 300.33859 * 12 11 9 14 14 O 1.42902 * 109.47083 * 305.35100 * 13 12 11 15 15 C 1.53045 * 109.45978 * 180.36693 * 12 11 9 16 16 C 1.53164 * 109.32714 * 301.36203 * 15 12 11 17 17 N 1.46930 * 108.76481 * 305.35495 * 16 15 12 18 18 C 1.36941 * 120.62824 * 233.63062 * 17 16 15 19 19 H 1.07998 * 119.99668 * 141.90504 * 18 17 16 20 20 C 1.38811 * 119.99863 * 321.91318 * 18 17 16 21 21 N 1.31611 * 120.00340 * 354.48991 * 20 18 17 22 22 Si 1.86802 * 119.99741 * 174.49555 * 20 18 17 23 23 H 1.48501 * 109.47206 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47327 * 119.99588 * 22 20 18 25 25 H 1.48498 * 109.46999 * 239.99937 * 22 20 18 26 26 C 1.46918 * 118.74200 * 53.60797 * 17 16 15 27 27 C 1.53040 * 109.45870 * 60.31167 * 12 11 9 28 28 H 1.09003 * 109.46737 * 90.00022 * 1 2 3 29 29 H 1.08998 * 109.47512 * 209.99863 * 1 2 3 30 30 H 1.08997 * 109.47439 * 330.00236 * 1 2 3 31 31 H 1.08001 * 120.42227 * 359.95089 * 3 2 1 32 32 H 1.08001 * 119.61802 * 179.97438 * 4 3 2 33 33 H 1.08000 * 119.61848 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46948 * 25.26356 * 8 7 6 35 35 H 1.08999 * 109.47087 * 145.25992 * 8 7 6 36 36 H 0.96997 * 120.00572 * 355.60367 * 11 9 8 37 37 H 1.08998 * 109.46831 * 65.34648 * 13 12 11 38 38 H 1.08997 * 109.46781 * 185.35119 * 13 12 11 39 39 H 0.96699 * 113.99802 * 179.97438 * 14 13 12 40 40 H 1.09002 * 109.49280 * 61.29583 * 15 12 11 41 41 H 1.08999 * 109.49635 * 181.39210 * 15 12 11 42 42 H 1.09001 * 109.58947 * 185.57236 * 16 15 12 43 43 H 1.09001 * 109.59437 * 65.13291 * 16 15 12 44 44 H 0.97003 * 120.00661 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.58955 * 186.60112 * 26 17 16 46 46 H 1.09006 * 109.70288 * 66.24578 * 26 17 16 47 47 H 1.09000 * 109.49104 * 178.60387 * 27 12 11 48 48 H 1.09000 * 109.49889 * 298.70215 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5982 1.1520 0.0005 5 7 4.2403 0.0000 0.0005 6 6 3.5983 -1.1517 0.0005 7 6 2.2166 -1.1909 0.0058 8 6 1.4907 -2.5116 0.0118 9 6 1.1408 -2.8988 -1.4019 10 8 1.4498 -2.1735 -2.3235 11 7 0.4842 -4.0511 -1.6421 12 6 0.0589 -4.3815 -3.0045 13 6 -0.8867 -3.2952 -3.5209 14 8 -1.9695 -3.1305 -2.6031 15 6 -0.6669 -5.7289 -2.9994 16 6 0.2708 -6.8078 -2.4494 17 7 1.5150 -6.7958 -3.2310 18 6 1.9840 -7.9430 -3.8136 19 1 2.4428 -7.9038 -4.7905 20 6 1.8695 -9.1560 -3.1486 21 7 1.4102 -9.1898 -1.9157 22 14 2.3675 -10.7405 -4.0036 23 1 2.8477 -10.4332 -5.3748 24 1 3.4540 -11.3979 -3.2339 25 1 1.1961 -11.6498 -4.0820 26 6 2.2460 -5.5297 -3.3761 27 6 1.2858 -4.4648 -3.9155 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6967 2.1377 -0.0008 32 1 4.1583 2.0753 0.0001 33 1 4.1585 -2.0750 0.0001 34 1 2.1319 -3.2766 0.4499 35 1 0.5779 -2.4218 0.6006 36 1 0.2933 -4.6616 -0.9129 37 1 -0.3433 -2.3549 -3.6141 38 1 -1.2776 -3.5871 -4.4956 39 1 -2.6097 -2.4556 -2.8672 40 1 -1.5535 -5.6621 -2.3688 41 1 -0.9619 -5.9871 -4.0165 42 1 -0.2054 -7.7845 -2.5356 43 1 0.4946 -6.5990 -1.4033 44 1 1.3298 -10.0376 -1.4510 45 1 3.0730 -5.6630 -4.0735 46 1 2.6327 -5.2154 -2.4066 47 1 0.9723 -4.7350 -4.9239 48 1 1.7892 -3.4983 -3.9371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281808675.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:09 Heat of formation + Delta-G solvation = -55.254593 kcal Electronic energy + Delta-G solvation = -30177.972094 eV Core-core repulsion = 26232.266914 eV Total energy + Delta-G solvation = -3945.705180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.74944 -40.95426 -38.87607 -37.40351 -35.60571 -35.26229 -33.80191 -33.28702 -31.93883 -31.61076 -29.33626 -28.41837 -28.06875 -25.62445 -24.08626 -23.87183 -23.08707 -22.43523 -21.39759 -20.16153 -18.82340 -18.20972 -17.95797 -17.72062 -17.31665 -16.85649 -16.58415 -16.19374 -15.84243 -15.68696 -15.46283 -15.22570 -14.95190 -14.77106 -14.56483 -14.28741 -14.17098 -13.90640 -13.79653 -13.60568 -13.49050 -13.25988 -13.19851 -12.94432 -12.71334 -12.66335 -12.58816 -12.24043 -12.17957 -11.96031 -11.87463 -11.42654 -11.31583 -10.99871 -10.56195 -10.47136 -10.36682 -10.26971 -9.84796 -9.84257 -8.50742 -7.87705 -5.45224 0.19435 0.36780 1.45242 1.47647 1.57352 1.79872 2.31800 2.49529 2.92119 3.27091 3.33469 3.53273 3.71856 3.73185 3.81164 3.86256 3.97926 4.01177 4.05789 4.15498 4.30723 4.46074 4.49650 4.52241 4.56439 4.63299 4.67684 4.71024 4.73766 4.78661 4.79837 4.91385 4.94608 5.05454 5.08196 5.14952 5.22715 5.23890 5.28822 5.46563 5.47124 5.65709 5.71009 5.75712 5.84831 6.45302 6.73926 6.92476 7.07314 7.19033 7.40416 7.84022 8.41288 9.17082 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016688 B = 0.003303 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.454176 B = 8476.197180 C = 9415.643492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.036 4.036 3 C -0.174 4.174 4 C 0.083 3.917 5 N -0.519 5.519 6 C 0.093 3.907 7 C -0.122 4.122 8 C -0.098 4.098 9 C 0.523 3.477 10 O -0.569 6.569 11 N -0.699 5.699 12 C 0.197 3.803 13 C 0.079 3.921 14 O -0.572 6.572 15 C -0.126 4.126 16 C 0.186 3.814 17 N -0.605 5.605 18 C -0.272 4.272 19 H 0.055 0.945 20 C -0.035 4.035 21 N -0.926 5.926 22 Si 0.964 3.036 23 H -0.270 1.270 24 H -0.290 1.290 25 H -0.287 1.287 26 C 0.157 3.843 27 C -0.132 4.132 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.162 0.838 32 H 0.177 0.823 33 H 0.151 0.849 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.404 0.596 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.391 0.609 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.010 0.990 44 H 0.252 0.748 45 H 0.040 0.960 46 H 0.009 0.991 47 H 0.061 0.939 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.699 19.627 5.095 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.044 4.044 3 C -0.194 4.194 4 C -0.073 4.073 5 N -0.228 5.228 6 C -0.064 4.064 7 C -0.124 4.124 8 C -0.138 4.138 9 C 0.310 3.690 10 O -0.449 6.449 11 N -0.350 5.350 12 C 0.110 3.890 13 C 0.000 4.000 14 O -0.379 6.379 15 C -0.165 4.165 16 C 0.060 3.940 17 N -0.329 5.329 18 C -0.402 4.402 19 H 0.072 0.928 20 C -0.232 4.232 21 N -0.571 5.571 22 Si 0.792 3.208 23 H -0.195 1.195 24 H -0.217 1.217 25 H -0.214 1.214 26 C 0.031 3.969 27 C -0.172 4.172 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.180 0.820 32 H 0.194 0.806 33 H 0.169 0.831 34 H 0.132 0.868 35 H 0.147 0.853 36 H 0.240 0.760 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.240 0.760 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.028 0.972 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.027 0.973 47 H 0.080 0.920 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.281 19.528 4.849 20.802 hybrid contribution -0.639 -1.178 -0.456 1.415 sum -5.919 18.350 4.393 19.775 Atomic orbital electron populations 1.20870 0.88767 1.04394 1.02926 1.20497 0.97952 0.92361 0.93613 1.22314 0.95367 0.99443 1.02237 1.23203 0.92752 0.96396 0.94931 1.67653 1.42177 0.99266 1.13720 1.22748 0.91751 0.96459 0.95402 1.20278 0.94622 0.95143 1.02378 1.20643 1.03420 0.95364 0.94340 1.20649 0.76488 0.80439 0.91394 1.90605 1.54576 1.53034 1.46647 1.45906 1.57722 1.21380 1.09976 1.20128 0.92658 0.93818 0.82360 1.22401 0.87763 0.98031 0.91797 1.86423 1.38045 1.63344 1.50089 1.22223 0.98481 0.93813 1.02010 1.20497 0.85471 0.96068 0.91944 1.44144 1.23142 1.04511 1.61122 1.19390 1.36048 0.86494 0.98270 0.92752 1.25999 0.99910 1.01555 0.95722 1.70075 1.50120 1.25322 1.11549 0.85264 0.77368 0.79892 0.78236 1.19482 1.21724 1.21392 1.20788 0.93268 0.86051 0.96745 1.22221 0.96864 0.99663 0.98464 0.91129 0.90377 0.88998 0.82017 0.80556 0.83132 0.86819 0.85325 0.75999 0.92962 0.92671 0.76000 0.90434 0.91914 0.93431 0.97193 0.93928 0.94091 0.97289 0.92009 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 9.68 71.24 0.69 -1.06 16 2 C -0.04 -0.75 5.92 -19.67 -0.12 -0.87 16 3 C -0.17 -3.22 9.82 22.36 0.22 -3.01 16 4 C 0.08 1.77 11.18 84.67 0.95 2.72 16 5 N -0.52 -14.21 10.36 -195.84 -2.03 -16.24 16 6 C 0.09 2.49 10.84 84.69 0.92 3.41 16 7 C -0.12 -2.92 4.39 -19.77 -0.09 -3.00 16 8 C -0.10 -2.12 5.39 29.10 0.16 -1.96 16 9 C 0.52 14.86 7.24 87.65 0.63 15.50 16 10 O -0.57 -19.37 12.33 -3.02 -0.04 -19.41 16 11 N -0.70 -20.60 3.86 -422.78 -1.63 -22.24 16 12 C 0.20 6.30 0.44 3.63 0.00 6.30 16 13 C 0.08 2.13 5.63 71.98 0.41 2.53 16 14 O -0.57 -13.23 12.94 -148.98 -1.93 -15.16 16 15 C -0.13 -4.47 4.87 30.66 0.15 -4.32 16 16 C 0.19 8.40 4.93 86.35 0.43 8.83 16 17 N -0.61 -29.94 2.95 -699.15 -2.07 -32.00 16 18 C -0.27 -14.91 9.51 84.03 0.80 -14.11 16 19 H 0.05 2.99 7.83 -2.91 -0.02 2.97 16 20 C -0.03 -1.92 5.13 84.86 0.43 -1.49 16 21 N -0.93 -52.90 11.29 21.65 0.24 -52.65 16 22 Si 0.96 44.35 29.56 68.60 2.03 46.38 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 26 C 0.16 6.84 6.26 86.36 0.54 7.38 16 27 C -0.13 -4.82 4.67 30.67 0.14 -4.68 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.10 6.16 -2.39 -0.01 1.09 16 30 H 0.09 0.97 8.10 -2.39 -0.02 0.95 16 31 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 32 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 34 H 0.11 2.25 8.06 -2.39 -0.02 2.23 16 35 H 0.13 2.11 6.28 -2.39 -0.02 2.10 16 36 H 0.40 11.53 7.26 -92.71 -0.67 10.85 16 37 H 0.05 1.52 6.45 -2.39 -0.02 1.50 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.39 5.40 9.12 -74.06 -0.68 4.72 16 40 H 0.08 2.53 7.80 -2.39 -0.02 2.51 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.05 2.47 6.48 -2.39 -0.02 2.46 16 43 H 0.01 0.46 6.93 -2.39 -0.02 0.45 16 44 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 45 H 0.04 1.83 7.93 -2.39 -0.02 1.81 16 46 H 0.01 0.41 7.74 -2.38 -0.02 0.39 16 47 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.08 2.82 6.09 -2.39 -0.01 2.80 16 Total: -1.00 -70.66 377.80 0.49 -70.17 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.36 Total: 28.97 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 6.26 Total: 12.18 kcal Atomic # 7 Polarization: -117.65 SS G_CDS: -5.48 Total: -123.13 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -1.97 Total: -34.57 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -70.66 0.49 -70.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281808675.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.913 kcal (2) G-P(sol) polarization free energy of solvation -70.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds