Wall clock time and date at job start Tue Mar 31 2020 17:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38356 * 119.40801 * 2 1 4 4 C 1.38334 * 119.45796 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.82166 * 179.97438 * 4 3 2 6 6 C 1.39988 * 118.35003 * 0.02562 * 4 3 2 7 7 C 1.47523 * 120.59543 * 180.02562 * 6 4 3 8 8 O 1.21594 * 119.99960 * 90.00087 * 7 6 4 9 9 N 1.34776 * 120.00407 * 269.99699 * 7 6 4 10 10 C 1.47428 * 125.64027 * 5.98995 * 9 7 6 11 11 C 1.54918 * 104.82634 * 155.89350 * 10 9 7 12 12 C 1.55152 * 101.58106 * 37.01335 * 11 10 9 13 13 C 1.47013 * 125.65184 * 186.01916 * 9 7 6 14 14 H 1.08998 * 110.01508 * 300.52460 * 13 9 7 15 15 C 1.52998 * 109.88500 * 61.62142 * 13 9 7 16 16 N 1.46502 * 109.47257 * 182.98118 * 15 13 9 17 17 C 1.46500 * 120.00117 * 264.98871 * 16 15 13 18 18 C 1.36941 * 120.00146 * 84.98382 * 16 15 13 19 19 H 1.07998 * 119.99581 * 329.86089 * 18 16 15 20 20 C 1.38803 * 120.00101 * 150.13145 * 18 16 15 21 21 N 1.31615 * 120.00541 * 158.90864 * 20 18 16 22 22 Si 1.86802 * 120.00109 * 338.90815 * 20 18 16 23 23 H 1.48507 * 109.47343 * 86.02910 * 22 20 18 24 24 H 1.48494 * 109.47655 * 206.03145 * 22 20 18 25 25 H 1.48505 * 109.47324 * 326.03073 * 22 20 18 26 26 C 1.40274 * 118.80800 * 0.26889 * 6 4 3 27 27 O 1.35427 * 119.80383 * 179.72669 * 26 6 4 28 28 N 1.31882 * 119.40576 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47625 * 89.99430 * 1 2 3 30 30 H 1.09010 * 109.46727 * 209.99710 * 1 2 3 31 31 H 1.09004 * 109.47174 * 329.99124 * 1 2 3 32 32 H 1.08001 * 120.26874 * 0.02922 * 3 2 1 33 33 H 1.09000 * 109.47162 * 270.01986 * 5 4 3 34 34 H 1.08999 * 109.47271 * 30.02787 * 5 4 3 35 35 H 1.09007 * 109.46521 * 150.02702 * 5 4 3 36 36 H 1.09002 * 110.36643 * 37.05998 * 10 9 7 37 37 H 1.08999 * 110.46355 * 274.77945 * 10 9 7 38 38 H 1.08995 * 111.00439 * 278.93486 * 11 10 9 39 39 H 1.09003 * 111.00083 * 155.08647 * 11 10 9 40 40 H 1.09001 * 110.71919 * 206.13552 * 12 11 10 41 41 H 1.08996 * 110.87908 * 82.93264 * 12 11 10 42 42 H 1.08996 * 109.47308 * 62.97873 * 15 13 9 43 43 H 1.09000 * 109.47079 * 302.97896 * 15 13 9 44 44 H 1.08998 * 109.46760 * 275.93334 * 17 16 15 45 45 H 1.08999 * 109.46928 * 35.92857 * 17 16 15 46 46 H 1.09000 * 109.47275 * 155.93106 * 17 16 15 47 47 H 0.96998 * 120.00938 * 180.02562 * 21 20 18 48 48 H 0.96701 * 113.99329 * 90.00354 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 -0.0005 5 6 4.3407 2.5014 -0.0011 6 6 4.2355 -0.0249 -0.0016 7 6 5.7097 -0.0814 -0.0017 8 8 6.3172 -0.1057 1.0514 9 7 6.3831 -0.1063 -1.1688 10 6 5.7860 0.0428 -2.5085 11 6 6.9415 0.5585 -3.4023 12 6 8.1529 -0.2205 -2.8256 13 6 7.8345 -0.2872 -1.3169 14 1 8.3650 0.5064 -0.7908 15 6 8.2490 -1.6495 -0.7574 16 7 9.7045 -1.7909 -0.8444 17 6 10.3070 -2.4712 -1.9936 18 6 10.5020 -1.2872 0.1483 19 1 10.1865 -0.4172 0.7051 20 6 11.7183 -1.8913 0.4351 21 7 12.6576 -1.2149 1.0617 22 14 12.0223 -3.6643 -0.0682 23 1 12.5194 -3.7036 -1.4670 24 1 13.0352 -4.2684 0.8341 25 1 10.7540 -4.4307 0.0281 26 6 3.4758 -1.2041 -0.0079 27 8 4.0991 -2.4064 -0.0146 28 7 2.1545 -1.1489 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5140 32 1 1.6411 2.1375 0.0005 33 1 4.5259 2.8135 -1.0289 34 1 3.7624 3.2689 0.5132 35 1 5.2917 2.3581 0.5120 36 1 4.9733 0.7687 -2.4829 37 1 5.4240 -0.9183 -2.8735 38 1 7.0764 1.6337 -3.2847 39 1 6.7722 0.2996 -4.4476 40 1 9.0805 0.3246 -3.0002 41 1 8.2097 -1.2219 -3.2523 42 1 7.7718 -2.4404 -1.3361 43 1 7.9384 -1.7240 0.2848 44 1 10.3029 -3.5475 -1.8216 45 1 9.7328 -2.2446 -2.8919 46 1 11.3334 -2.1276 -2.1221 47 1 13.5077 -1.6369 1.2619 48 1 4.2803 -2.7603 0.8668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281951124.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:43 Heat of formation + Delta-G solvation = -38.725090 kcal Electronic energy + Delta-G solvation = -30002.897183 eV Core-core repulsion = 26057.908776 eV Total energy + Delta-G solvation = -3944.988407 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.15198 -40.79278 -38.78498 -38.43928 -37.31653 -35.31647 -33.87773 -32.97894 -32.42070 -31.23258 -29.36558 -28.44222 -28.12816 -27.01677 -25.09151 -23.94617 -22.95030 -22.57104 -21.80211 -20.36555 -19.53438 -18.96523 -18.40186 -18.35279 -17.52930 -17.15295 -16.77758 -16.56097 -15.73475 -15.43772 -15.32804 -15.19918 -15.03997 -14.87955 -14.38748 -14.31869 -14.25881 -14.04436 -13.96817 -13.90041 -13.82291 -13.27125 -13.25415 -13.05633 -12.98128 -12.84124 -12.64539 -12.56232 -12.34295 -12.20344 -12.09172 -11.83247 -11.70669 -11.49567 -11.32829 -10.74253 -10.65018 -10.48818 -9.87618 -9.85310 -8.88015 -8.21412 -5.57698 -0.31170 0.00644 1.28298 1.35838 1.39427 1.49245 1.85904 2.25678 2.38937 2.62670 3.05166 3.22281 3.36694 3.51014 3.53205 3.65362 3.79878 3.92551 4.01117 4.16865 4.21531 4.27299 4.32085 4.41159 4.48784 4.53283 4.55045 4.60334 4.62599 4.69284 4.82803 4.83271 4.90741 4.94329 4.94840 5.00415 5.03037 5.07131 5.11117 5.11382 5.17749 5.35039 5.40835 5.51195 5.84270 6.09538 6.35521 6.43299 6.78176 6.89140 7.00013 7.58278 7.93272 8.99485 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018448 B = 0.003286 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.400268 B = 8520.150292 C = 8799.949659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.160 3.840 3 C -0.171 4.171 4 C 0.005 3.995 5 C -0.122 4.122 6 C -0.211 4.211 7 C 0.586 3.414 8 O -0.579 6.579 9 N -0.598 5.598 10 C 0.099 3.901 11 C -0.117 4.117 12 C -0.112 4.112 13 C 0.124 3.876 14 H 0.036 0.964 15 C 0.152 3.848 16 N -0.616 5.616 17 C 0.103 3.897 18 C -0.254 4.254 19 H 0.035 0.965 20 C -0.028 4.028 21 N -0.955 5.955 22 Si 0.955 3.045 23 H -0.258 1.258 24 H -0.309 1.309 25 H -0.277 1.277 26 C 0.340 3.660 27 O -0.491 6.491 28 N -0.526 5.526 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.187 0.813 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.042 0.958 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.021 0.979 44 H 0.008 0.992 45 H 0.078 0.922 46 H 0.046 0.954 47 H 0.264 0.736 48 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.352 6.901 -11.576 30.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.023 3.977 3 C -0.190 4.190 4 C -0.003 4.003 5 C -0.178 4.178 6 C -0.218 4.218 7 C 0.374 3.626 8 O -0.459 6.459 9 N -0.330 5.330 10 C -0.023 4.023 11 C -0.154 4.154 12 C -0.150 4.150 13 C 0.019 3.981 14 H 0.054 0.946 15 C 0.025 3.975 16 N -0.340 5.340 17 C -0.041 4.041 18 C -0.384 4.384 19 H 0.053 0.947 20 C -0.223 4.223 21 N -0.601 5.601 22 Si 0.783 3.217 23 H -0.183 1.183 24 H -0.238 1.238 25 H -0.203 1.203 26 C 0.161 3.839 27 O -0.301 6.301 28 N -0.247 5.247 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.127 0.873 32 H 0.204 0.796 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.135 0.865 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.026 0.974 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -27.343 6.114 -11.512 30.291 hybrid contribution 1.643 -0.501 1.299 2.153 sum -25.700 5.613 -10.213 28.219 Atomic orbital electron populations 1.20933 0.85279 1.05039 1.04782 1.21936 0.98762 0.86672 0.90361 1.22168 0.92434 1.00984 1.03406 1.20556 0.94838 0.93567 0.91344 1.20989 0.99197 0.93142 1.04513 1.20757 0.92890 0.95623 1.12526 1.17872 0.86884 0.75387 0.82487 1.90856 1.70531 1.52026 1.32524 1.48599 1.08065 1.69797 1.06562 1.22537 0.97290 1.01764 0.80671 1.22807 0.91993 1.00432 1.00208 1.22605 0.99432 1.02054 0.90909 1.22134 0.79401 0.98033 0.98581 0.94554 1.21017 0.83201 0.94918 0.98342 1.44079 1.01399 1.67548 1.20992 1.21534 0.98391 0.94355 0.89845 1.18650 0.99786 1.07156 1.12767 0.94713 1.25958 0.96161 1.01679 0.98505 1.69978 1.05369 1.37768 1.46967 0.85825 0.76503 0.81579 0.77757 1.18291 1.23798 1.20292 1.19088 0.86825 0.84294 0.93644 1.84630 1.76956 1.32985 1.35515 1.67146 1.08404 1.32108 1.17054 0.88344 0.90750 0.87318 0.79562 0.88019 0.87135 0.93914 0.89366 0.90839 0.89971 0.86519 0.90546 0.89705 0.92075 0.96036 0.97385 0.90388 0.93561 0.92744 0.72361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.16 71.24 0.72 -0.15 16 2 C 0.16 2.71 6.78 42.58 0.29 3.00 16 3 C -0.17 -2.42 9.41 22.32 0.21 -2.21 16 4 C 0.00 0.10 5.89 -19.42 -0.11 -0.02 16 5 C -0.12 -2.10 9.69 71.24 0.69 -1.41 16 6 C -0.21 -5.93 4.63 -19.91 -0.09 -6.02 16 7 C 0.59 20.90 5.17 86.69 0.45 21.35 16 8 O -0.58 -26.98 16.33 -4.01 -0.07 -27.04 16 9 N -0.60 -19.13 3.06 -791.77 -2.43 -21.55 16 10 C 0.10 2.15 6.63 86.86 0.58 2.73 16 11 C -0.12 -2.15 7.09 31.99 0.23 -1.93 16 12 C -0.11 -3.07 5.58 31.78 0.18 -2.89 16 13 C 0.12 4.64 3.08 45.34 0.14 4.78 16 14 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 15 C 0.15 6.72 5.12 86.38 0.44 7.17 16 16 N -0.62 -30.76 2.48 -726.95 -1.81 -32.56 16 17 C 0.10 4.34 8.11 127.77 1.04 5.38 16 18 C -0.25 -15.51 9.98 84.03 0.84 -14.67 16 19 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 20 C -0.03 -1.71 5.18 84.86 0.44 -1.27 16 21 N -0.96 -62.64 13.97 21.65 0.30 -62.34 16 22 Si 0.96 48.74 24.14 68.60 1.66 50.39 16 23 H -0.26 -11.88 6.62 99.48 0.66 -11.22 16 24 H -0.31 -15.94 7.11 99.48 0.71 -15.24 16 25 H -0.28 -14.03 6.95 99.48 0.69 -13.34 16 26 C 0.34 9.51 7.77 85.13 0.66 10.17 16 27 O -0.49 -14.15 13.02 -87.23 -1.14 -15.29 16 28 N -0.53 -12.90 10.28 -296.05 -3.04 -15.94 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.11 0.31 8.07 -2.38 -0.02 0.29 16 32 H 0.19 0.98 8.06 -2.91 -0.02 0.96 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.11 1.20 8.10 -2.39 -0.02 1.19 16 35 H 0.04 1.07 7.19 -2.38 -0.02 1.06 16 36 H 0.09 1.56 7.75 -2.39 -0.02 1.55 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 41 H 0.08 2.18 6.14 -2.39 -0.01 2.16 16 42 H 0.06 2.41 7.96 -2.39 -0.02 2.39 16 43 H 0.02 1.11 6.90 -2.39 -0.02 1.09 16 44 H 0.01 0.35 5.78 -2.39 -0.01 0.33 16 45 H 0.08 2.59 5.89 -2.39 -0.01 2.57 16 46 H 0.05 2.08 6.31 -2.39 -0.02 2.06 16 47 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 48 H 0.42 9.54 9.06 -74.06 -0.67 8.87 16 Total: -1.00 -87.28 382.95 0.42 -86.86 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.25 Total: 13.47 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: 6.69 Total: 24.00 kcal Atomic # 7 Polarization: -125.42 SS G_CDS: -6.97 Total: -132.39 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -1.20 Total: -42.33 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 1.66 Total: 50.39 kcal Total: -87.28 0.42 -86.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281951124.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.137 kcal (2) G-P(sol) polarization free energy of solvation -87.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds