Wall clock time and date at job start Tue Mar 31 2020 17:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38359 * 119.40343 * 2 1 4 4 C 1.38332 * 119.45543 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.82890 * 179.97438 * 4 3 2 6 6 C 1.39991 * 118.35065 * 0.02562 * 4 3 2 7 7 C 1.47519 * 120.59980 * 179.72432 * 6 4 3 8 8 O 1.21596 * 119.99983 * 86.00445 * 7 6 4 9 9 N 1.34775 * 120.00380 * 266.00467 * 7 6 4 10 10 C 1.47430 * 125.64622 * 4.44634 * 9 7 6 11 11 C 1.54690 * 104.94349 * 204.07277 * 10 9 7 12 12 C 1.55163 * 101.67520 * 323.27690 * 11 10 9 13 13 C 1.47026 * 125.65422 * 184.75167 * 9 7 6 14 14 H 1.09000 * 109.88049 * 59.48680 * 13 9 7 15 15 C 1.53002 * 109.88149 * 298.32506 * 13 9 7 16 16 N 1.46495 * 109.46982 * 175.70416 * 15 13 9 17 17 C 1.46503 * 119.99799 * 275.17351 * 16 15 13 18 18 C 1.36942 * 119.99938 * 95.17637 * 16 15 13 19 19 H 1.07998 * 119.99958 * 2.55604 * 18 16 15 20 20 C 1.38816 * 119.99631 * 182.56116 * 18 16 15 21 21 N 1.31616 * 120.00143 * 7.23679 * 20 18 16 22 22 Si 1.86798 * 119.99625 * 187.24418 * 20 18 16 23 23 H 1.48494 * 109.47283 * 94.98610 * 22 20 18 24 24 H 1.48498 * 109.46864 * 214.99005 * 22 20 18 25 25 H 1.48499 * 109.47241 * 334.98357 * 22 20 18 26 26 C 1.40287 * 118.80493 * 359.97438 * 6 4 3 27 27 O 1.35429 * 119.79759 * 180.02562 * 26 6 4 28 28 N 1.31872 * 119.40652 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47540 * 90.00091 * 1 2 3 30 30 H 1.09007 * 109.47147 * 209.99724 * 1 2 3 31 31 H 1.08998 * 109.47179 * 329.99646 * 1 2 3 32 32 H 1.07995 * 120.27103 * 359.96006 * 3 2 1 33 33 H 1.09002 * 109.47109 * 274.22601 * 5 4 3 34 34 H 1.09008 * 109.46898 * 34.21730 * 5 4 3 35 35 H 1.08998 * 109.47597 * 154.22000 * 5 4 3 36 36 H 1.09004 * 110.36206 * 323.00227 * 10 9 7 37 37 H 1.09000 * 110.36576 * 85.32077 * 10 9 7 38 38 H 1.08990 * 111.10208 * 205.10564 * 11 10 9 39 39 H 1.09005 * 110.81324 * 81.31792 * 11 10 9 40 40 H 1.08996 * 110.71871 * 276.97339 * 12 11 10 41 41 H 1.08997 * 110.71695 * 153.69579 * 12 11 10 42 42 H 1.09006 * 109.47135 * 295.70416 * 15 13 9 43 43 H 1.09004 * 109.47390 * 55.70020 * 15 13 9 44 44 H 1.08993 * 109.47503 * 354.65373 * 17 16 15 45 45 H 1.09001 * 109.46936 * 114.65634 * 17 16 15 46 46 H 1.09001 * 109.47177 * 234.65567 * 17 16 15 47 47 H 0.96998 * 119.99879 * 179.97438 * 21 20 18 48 48 H 0.96699 * 113.99856 * 90.00306 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2054 0.0000 4 6 3.5696 1.2066 0.0005 5 6 4.3407 2.5014 0.0000 6 6 4.2355 -0.0248 0.0005 7 6 5.7096 -0.0813 -0.0050 8 8 6.3240 -0.0292 1.0430 9 7 6.3755 -0.1908 -1.1717 10 6 5.7660 -0.1712 -2.5139 11 6 6.7711 -0.9213 -3.4195 12 6 8.1300 -0.4640 -2.8262 13 6 7.8292 -0.3560 -1.3165 14 1 8.1515 -1.2648 -0.8083 15 6 8.5519 0.8572 -0.7274 16 7 9.9993 0.6379 -0.7834 17 6 10.6690 -0.1079 0.2851 18 6 10.7263 1.1302 -1.8343 19 1 10.2395 1.7153 -2.6006 20 6 12.0888 0.8771 -1.9147 21 7 12.6557 0.0490 -1.0632 22 14 13.1177 1.7121 -3.2313 23 1 13.7382 2.9391 -2.6705 24 1 14.1824 0.7841 -3.6900 25 1 12.2503 2.0767 -4.3802 26 6 3.4757 -1.2041 0.0005 27 8 4.0992 -2.4063 0.0010 28 7 2.1545 -1.1488 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6410 2.1375 -0.0007 33 1 4.4620 2.8516 -1.0251 34 1 3.7963 3.2488 0.5772 35 1 5.3215 2.3404 0.4474 36 1 4.8063 -0.6880 -2.5023 37 1 5.6409 0.8552 -2.8588 38 1 6.6731 -0.6075 -4.4586 39 1 6.6470 -2.0001 -3.3253 40 1 8.4213 0.5049 -3.2317 41 1 8.9028 -1.2096 -3.0131 42 1 8.2967 1.7470 -1.3030 43 1 8.2450 0.9948 0.3094 44 1 9.9521 -0.3353 1.0740 45 1 11.0723 -1.0369 -0.1181 46 1 11.4808 0.4934 0.6942 47 1 13.6077 -0.1282 -1.1196 48 1 4.2799 -2.7553 0.8846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281951125.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:46 Heat of formation + Delta-G solvation = -31.088799 kcal Electronic energy + Delta-G solvation = -29953.574361 eV Core-core repulsion = 26008.917088 eV Total energy + Delta-G solvation = -3944.657273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.14094 -40.76509 -38.69270 -38.43894 -37.19449 -35.27152 -33.52945 -32.93141 -32.40997 -30.71495 -29.30857 -28.43737 -28.02720 -26.80210 -25.03327 -23.92509 -22.94557 -22.55975 -21.69866 -20.28169 -19.52753 -18.91874 -18.53227 -18.20954 -17.58191 -16.88440 -16.66459 -16.27918 -15.50108 -15.48266 -15.28441 -15.12030 -14.91559 -14.62178 -14.35341 -14.23685 -14.15903 -13.96533 -13.94055 -13.57490 -13.41643 -13.24215 -12.98198 -12.85022 -12.84070 -12.76859 -12.68654 -12.63349 -12.32139 -12.14377 -12.01760 -11.89733 -11.62117 -11.55676 -11.24389 -10.65757 -10.63862 -10.46244 -9.87571 -9.81292 -8.91442 -7.71733 -5.17036 -0.30298 0.02384 1.38544 1.48522 1.50333 1.58923 1.86409 2.26843 2.53638 2.63564 3.24116 3.38323 3.51401 3.54780 3.59703 3.80119 3.85475 3.95111 4.04206 4.17923 4.23870 4.29250 4.42244 4.44225 4.51121 4.56385 4.61331 4.64084 4.76472 4.83775 4.85450 4.90855 4.96722 5.01591 5.04295 5.06013 5.11353 5.14254 5.19117 5.36415 5.41942 5.49251 5.52210 5.60855 5.79013 6.28571 6.37400 6.45827 6.79000 6.99070 7.16844 7.87185 8.30514 9.28002 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022306 B = 0.002999 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.952772 B = 9334.046122 C = 9352.268797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.161 3.839 3 C -0.172 4.172 4 C 0.007 3.993 5 C -0.124 4.124 6 C -0.212 4.212 7 C 0.588 3.412 8 O -0.576 6.576 9 N -0.596 5.596 10 C 0.104 3.896 11 C -0.122 4.122 12 C -0.101 4.101 13 C 0.124 3.876 14 H 0.036 0.964 15 C 0.157 3.843 16 N -0.618 5.618 17 C 0.191 3.809 18 C -0.239 4.239 19 H 0.086 0.914 20 C -0.066 4.066 21 N -0.951 5.951 22 Si 0.973 3.027 23 H -0.293 1.293 24 H -0.299 1.299 25 H -0.261 1.261 26 C 0.341 3.659 27 O -0.491 6.491 28 N -0.526 5.526 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.185 0.815 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.033 0.967 44 H 0.003 0.997 45 H 0.019 0.981 46 H 0.016 0.984 47 H 0.243 0.757 48 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.475 2.890 -2.591 27.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.023 3.977 3 C -0.191 4.191 4 C -0.001 4.001 5 C -0.180 4.180 6 C -0.219 4.219 7 C 0.376 3.624 8 O -0.456 6.456 9 N -0.328 5.328 10 C -0.018 4.018 11 C -0.160 4.160 12 C -0.139 4.139 13 C 0.018 3.982 14 H 0.055 0.945 15 C 0.029 3.971 16 N -0.342 5.342 17 C 0.046 3.954 18 C -0.369 4.369 19 H 0.104 0.896 20 C -0.259 4.259 21 N -0.601 5.601 22 Si 0.802 3.198 23 H -0.220 1.220 24 H -0.226 1.226 25 H -0.186 1.186 26 C 0.162 3.838 27 O -0.301 6.301 28 N -0.247 5.247 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.203 0.797 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.021 0.979 45 H 0.037 0.963 46 H 0.034 0.966 47 H 0.053 0.947 48 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -27.452 2.127 -2.567 27.653 hybrid contribution 2.061 0.281 0.373 2.113 sum -25.391 2.408 -2.194 25.599 Atomic orbital electron populations 1.20929 0.85323 1.05058 1.04730 1.21907 0.98727 0.86651 0.90401 1.22154 0.92489 1.00989 1.03510 1.20546 0.94793 0.93644 0.91076 1.20990 0.99176 0.93174 1.04657 1.20761 0.93002 0.95534 1.12557 1.17806 0.86840 0.75449 0.82336 1.90803 1.69993 1.52293 1.32537 1.48651 1.07695 1.70033 1.06407 1.22420 0.96958 1.01673 0.80752 1.22773 0.92645 1.00385 1.00170 1.22376 0.97405 1.02349 0.91775 1.22306 0.78827 0.98852 0.98200 0.94538 1.21038 0.82747 0.95122 0.98176 1.44194 1.02177 1.63902 1.23932 1.20627 0.92145 0.95044 0.87621 1.19661 0.90648 1.25321 1.01255 0.89583 1.25671 0.98366 1.00428 1.01415 1.70428 1.10094 1.39342 1.40206 0.85129 0.78503 0.77144 0.78993 1.22002 1.22592 1.18572 1.19068 0.86802 0.84243 0.93723 1.84637 1.76926 1.32974 1.35515 1.67128 1.08455 1.32019 1.17118 0.88474 0.90636 0.87364 0.79745 0.88197 0.87283 0.93642 0.90543 0.89474 0.86985 0.90945 0.90621 0.92004 0.92808 0.94868 0.97856 0.96297 0.96562 0.94741 0.72249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.16 71.24 0.72 -0.13 16 2 C 0.16 2.67 6.78 42.58 0.29 2.96 16 3 C -0.17 -2.46 9.43 22.32 0.21 -2.25 16 4 C 0.01 0.15 5.95 -19.42 -0.12 0.03 16 5 C -0.12 -2.23 9.75 71.24 0.69 -1.54 16 6 C -0.21 -5.78 4.52 -19.91 -0.09 -5.87 16 7 C 0.59 20.19 5.23 86.69 0.45 20.65 16 8 O -0.58 -24.73 15.85 -4.02 -0.06 -24.79 16 9 N -0.60 -19.45 3.07 -792.20 -2.43 -21.87 16 10 C 0.10 2.54 6.71 86.78 0.58 3.12 16 11 C -0.12 -2.95 7.07 31.91 0.23 -2.73 16 12 C -0.10 -3.42 5.74 31.78 0.18 -3.23 16 13 C 0.12 4.83 3.15 45.34 0.14 4.97 16 14 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 15 C 0.16 6.98 5.08 86.38 0.44 7.42 16 16 N -0.62 -32.57 2.82 -726.92 -2.05 -34.62 16 17 C 0.19 10.56 8.99 127.77 1.15 11.71 16 18 C -0.24 -12.97 8.85 84.03 0.74 -12.23 16 19 H 0.09 4.36 7.41 -2.91 -0.02 4.34 16 20 C -0.07 -3.73 5.41 84.86 0.46 -3.27 16 21 N -0.95 -57.43 9.52 21.65 0.21 -57.23 16 22 Si 0.97 45.17 29.56 68.60 2.03 47.19 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 24 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 26 C 0.34 9.09 7.72 85.13 0.66 9.74 16 27 O -0.49 -13.14 13.01 -87.25 -1.14 -14.27 16 28 N -0.53 -12.46 10.28 -296.05 -3.04 -15.51 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.11 0.30 8.07 -2.39 -0.02 0.28 16 32 H 0.19 1.07 8.06 -2.91 -0.02 1.04 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.11 1.31 8.13 -2.38 -0.02 1.29 16 35 H 0.04 1.16 7.00 -2.39 -0.02 1.15 16 36 H 0.08 1.78 7.57 -2.38 -0.02 1.76 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.11 2.04 8.14 -2.39 -0.02 2.03 16 39 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.08 2.64 7.05 -2.39 -0.02 2.62 16 41 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.05 2.27 7.87 -2.38 -0.02 2.25 16 43 H 0.03 1.59 6.43 -2.39 -0.02 1.58 16 44 H 0.00 0.15 7.83 -2.39 -0.02 0.13 16 45 H 0.02 1.11 7.02 -2.39 -0.02 1.10 16 46 H 0.02 0.95 7.09 -2.39 -0.02 0.93 16 47 H 0.24 14.33 8.31 -92.71 -0.77 13.56 16 48 H 0.42 8.26 9.06 -74.06 -0.67 7.59 16 Total: -1.00 -77.21 388.00 0.56 -76.65 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.30 Total: 15.10 kcal Atomic # 6 Polarization: 22.60 SS G_CDS: 6.75 Total: 29.35 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -7.32 Total: -129.23 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -1.20 Total: -39.06 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -77.21 0.56 -76.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281951125.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.562 kcal (2) G-P(sol) polarization free energy of solvation -77.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds