Wall clock time and date at job start Tue Mar 31 2020 17:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38623 * 120.76317 * 2 1 4 4 C 1.38557 * 119.35665 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.54841 * 180.02562 * 4 3 2 6 6 N 1.31523 * 120.90248 * 359.97438 * 4 3 2 7 7 C 1.32716 * 121.64057 * 0.02562 * 6 4 3 8 8 C 1.48167 * 119.72052 * 179.97438 * 7 6 4 9 9 O 1.21521 * 120.00468 * 171.70626 * 8 7 6 10 10 N 1.34784 * 120.00372 * 351.70286 * 8 7 6 11 11 C 1.47153 * 120.97662 * 352.68473 * 10 8 7 12 12 C 1.53296 * 108.38259 * 230.50863 * 11 10 8 13 13 O 1.42961 * 109.22422 * 307.70170 * 12 11 10 14 14 C 1.42958 * 114.16655 * 62.58205 * 13 12 11 15 15 H 1.09003 * 109.51781 * 57.33864 * 14 13 12 16 16 C 1.52999 * 109.55256 * 177.47125 * 14 13 12 17 17 H 1.09000 * 109.46938 * 174.76671 * 16 14 13 18 18 C 1.53002 * 109.47278 * 54.77096 * 16 14 13 19 19 N 1.46501 * 109.47104 * 294.76729 * 16 14 13 20 20 C 1.36933 * 119.99955 * 205.00305 * 19 16 14 21 21 H 1.08002 * 120.00171 * 359.97438 * 20 19 16 22 22 C 1.38815 * 119.99794 * 180.02562 * 20 19 16 23 23 N 1.31619 * 119.99877 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99948 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46828 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47142 * 119.99997 * 24 22 20 27 27 H 1.48502 * 109.46710 * 239.99885 * 24 22 20 28 28 C 1.47149 * 120.98326 * 172.66134 * 10 8 7 29 29 C 1.38597 * 120.75218 * 180.28208 * 2 1 3 30 30 H 1.09005 * 109.47314 * 89.99287 * 1 2 3 31 31 H 1.08996 * 109.47277 * 209.99831 * 1 2 3 32 32 H 1.09002 * 109.46775 * 329.99617 * 1 2 3 33 33 H 1.08006 * 120.32019 * 0.02723 * 3 2 1 34 34 H 1.09001 * 109.47412 * 269.97655 * 5 4 3 35 35 H 1.09000 * 109.47168 * 29.97708 * 5 4 3 36 36 H 1.08997 * 109.47335 * 149.97747 * 5 4 3 37 37 H 1.08999 * 109.68209 * 110.78944 * 11 10 8 38 38 H 1.09005 * 109.71218 * 350.25217 * 11 10 8 39 39 H 1.09008 * 109.50736 * 67.62328 * 12 11 10 40 40 H 1.09000 * 109.50982 * 187.76982 * 12 11 10 41 41 H 1.08997 * 109.47165 * 180.02562 * 18 16 14 42 42 H 1.09000 * 109.46788 * 299.99666 * 18 16 14 43 43 H 1.09000 * 109.47309 * 59.99923 * 18 16 14 44 44 H 0.97000 * 119.99694 * 25.00265 * 19 16 14 45 45 H 0.97006 * 119.99632 * 180.02562 * 23 22 20 46 46 H 1.09004 * 109.67718 * 249.21213 * 28 10 8 47 47 H 1.08991 * 109.68365 * 9.76117 * 28 10 8 48 48 H 1.07997 * 120.46922 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2160 1.1912 0.0000 4 6 3.6012 1.1572 -0.0005 5 6 4.3763 2.4495 0.0000 6 7 4.2487 0.0124 -0.0005 7 6 3.6081 -1.1499 -0.0005 8 6 4.3804 -2.4144 -0.0011 9 8 3.8085 -3.4758 0.1507 10 7 5.7173 -2.3875 -0.1701 11 6 6.4123 -1.1368 -0.5140 12 6 7.3152 -1.4024 -1.7240 13 8 8.1439 -2.5355 -1.4532 14 6 7.4225 -3.7529 -1.2499 15 1 6.8070 -3.9620 -2.1249 16 6 8.4087 -4.9022 -1.0323 17 1 7.8592 -5.8107 -0.7856 18 6 9.3557 -4.5510 0.1170 19 7 9.1848 -5.1180 -2.2560 20 6 9.7363 -6.3455 -2.5094 21 1 9.5995 -7.1544 -1.8070 22 6 10.4721 -6.5498 -3.6686 23 7 10.6392 -5.5638 -4.5244 24 14 11.2251 -8.2242 -4.0141 25 1 10.8940 -9.1541 -2.9047 26 1 10.6804 -8.7586 -5.2879 27 1 12.7000 -8.0904 -4.1238 28 6 6.5251 -3.6077 -0.0156 29 6 2.2156 -1.1911 -0.0059 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6938 2.1366 0.0004 34 1 4.5632 2.7616 -1.0275 35 1 3.8000 3.2186 0.5143 36 1 5.3264 2.3031 0.5137 37 1 7.0178 -0.8090 0.3309 38 1 5.6819 -0.3668 -0.7629 39 1 6.6993 -1.6030 -2.6008 40 1 7.9411 -0.5296 -1.9098 41 1 10.0585 -5.3696 0.2717 42 1 9.9052 -3.6426 -0.1297 43 1 8.7782 -4.3905 1.0274 44 1 9.3080 -4.3914 -2.8866 45 1 11.1531 -5.7068 -5.3346 46 1 7.1420 -3.5286 0.8796 47 1 5.8692 -4.4744 0.0654 48 1 1.6957 -2.1376 -0.0109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282912077.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:09 Heat of formation + Delta-G solvation = -14.414397 kcal Electronic energy + Delta-G solvation = -29098.476201 eV Core-core repulsion = 25154.541984 eV Total energy + Delta-G solvation = -3943.934216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.24760 -39.76196 -38.23184 -35.55765 -34.84432 -34.23397 -33.17546 -32.34509 -30.18532 -28.58348 -28.32366 -27.99823 -27.29546 -25.10050 -24.07734 -23.33486 -22.04372 -21.60391 -19.74316 -19.46908 -17.70225 -17.19808 -16.79588 -16.48827 -16.10416 -15.76940 -15.68845 -15.13074 -14.75583 -14.56257 -14.35410 -14.21827 -13.86973 -13.78823 -13.43951 -13.27935 -13.16494 -13.06262 -12.84493 -12.66705 -12.51368 -12.39713 -12.14407 -12.00170 -11.77256 -11.22674 -11.03916 -10.80612 -10.67705 -10.50555 -10.40065 -10.21451 -9.95477 -9.92765 -9.73128 -9.61451 -9.37529 -9.15569 -8.84784 -8.35746 -6.87670 -5.68669 -2.97047 0.31403 0.75360 2.50518 2.78659 3.45606 3.48098 3.53570 3.55886 3.66075 4.11949 4.14852 4.19149 4.55262 4.63244 4.64012 4.78041 4.91039 4.99846 5.05751 5.10997 5.19136 5.21535 5.25970 5.32590 5.36958 5.41971 5.44668 5.58587 5.63508 5.66795 5.75184 5.81639 5.84034 5.91665 5.99971 6.05865 6.11649 6.25398 6.31524 6.53747 6.56174 6.72244 6.88816 7.21921 7.26187 7.40779 7.60760 7.77038 8.01315 8.49600 9.61409 10.19800 10.56606 11.53943 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022460 B = 0.002482 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.373327 B =11276.479190 C =11706.243841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.043 4.043 3 C -0.154 4.154 4 C 0.125 3.875 5 C -0.106 4.106 6 N -0.455 5.455 7 C 0.095 3.905 8 C 0.568 3.432 9 O -0.535 6.535 10 N -0.589 5.589 11 C 0.045 3.955 12 C 0.044 3.956 13 O -0.361 6.361 14 C 0.078 3.922 15 H 0.062 0.938 16 C 0.185 3.815 17 H 0.059 0.941 18 C -0.162 4.162 19 N -0.719 5.719 20 C -0.236 4.236 21 H 0.071 0.929 22 C -0.015 4.015 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.079 3.921 29 C -0.119 4.119 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.139 0.861 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.148 0.852 39 H 0.048 0.952 40 H 0.101 0.899 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.034 0.966 44 H 0.389 0.611 45 H 0.253 0.747 46 H 0.083 0.917 47 H 0.099 0.901 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.827 19.498 11.126 29.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.051 4.051 3 C -0.174 4.174 4 C -0.014 4.014 5 C -0.163 4.163 6 N -0.169 5.169 7 C -0.043 4.043 8 C 0.355 3.645 9 O -0.411 6.411 10 N -0.321 5.321 11 C -0.078 4.078 12 C -0.034 4.034 13 O -0.279 6.279 14 C 0.018 3.982 15 H 0.080 0.920 16 C 0.074 3.926 17 H 0.077 0.923 18 C -0.222 4.222 19 N -0.361 5.361 20 C -0.367 4.367 21 H 0.089 0.911 22 C -0.211 4.211 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.220 1.220 28 C -0.043 4.043 29 C -0.140 4.140 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.157 0.843 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.164 0.836 39 H 0.066 0.934 40 H 0.119 0.881 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.223 0.777 45 H 0.063 0.937 46 H 0.101 0.899 47 H 0.118 0.882 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.959 18.711 11.214 28.902 hybrid contribution -0.531 -0.615 -0.483 0.946 sum -19.490 18.096 10.731 28.679 Atomic orbital electron populations 1.20854 0.89542 1.03700 1.03283 1.20375 0.97207 0.92468 0.95003 1.22052 0.94719 0.98914 1.01702 1.21494 0.91387 0.94086 0.94389 1.20768 1.00526 0.91468 1.03572 1.67478 1.38815 0.97788 1.12786 1.21157 0.91751 0.91911 0.99450 1.17896 0.81842 0.87305 0.77486 1.90785 1.69284 1.30352 1.50705 1.47998 1.05691 1.11074 1.67314 1.23625 0.98322 0.87398 0.98442 1.23007 0.94006 0.90488 0.95924 1.88073 1.32490 1.16034 1.91298 1.22921 0.93628 0.86178 0.95425 0.91987 1.20196 0.90930 0.92368 0.89085 0.92337 1.22407 1.00440 1.02005 0.97335 1.42364 1.61100 1.12138 1.20467 1.19302 1.25282 0.88952 1.03207 0.91121 1.24742 1.01358 0.97554 0.97422 1.69696 1.45425 1.30655 1.12178 0.86133 0.78765 0.83727 0.77684 1.20568 1.21969 1.21950 1.22577 0.94185 0.87689 0.99852 1.21988 0.93608 0.99693 0.98723 0.90130 0.90589 0.90745 0.84307 0.89940 0.90449 0.89979 0.91015 0.83578 0.93416 0.88112 0.92936 0.92414 0.94689 0.77679 0.93670 0.89917 0.88240 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 10.06 36.00 0.36 -0.19 16 2 C -0.04 -0.33 5.91 -104.35 -0.62 -0.94 16 3 C -0.15 -1.05 9.45 -39.32 -0.37 -1.42 16 4 C 0.13 1.02 6.78 -82.61 -0.56 0.46 16 5 C -0.11 -0.54 10.17 36.00 0.37 -0.17 16 6 N -0.45 -4.91 6.04 -6.06 -0.04 -4.94 16 7 C 0.09 1.17 6.60 -83.01 -0.55 0.63 16 8 C 0.57 8.67 7.67 -12.18 -0.09 8.57 16 9 O -0.53 -9.46 15.83 5.35 0.08 -9.38 16 10 N -0.59 -8.80 3.02 -173.26 -0.52 -9.32 16 11 C 0.04 0.57 6.03 -3.53 -0.02 0.55 16 12 C 0.04 0.62 6.98 37.31 0.26 0.88 16 13 O -0.36 -6.61 9.25 -35.23 -0.33 -6.94 16 14 C 0.08 1.44 2.60 -26.58 -0.07 1.37 16 15 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 16 C 0.18 3.88 2.77 -67.93 -0.19 3.69 16 17 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 18 C -0.16 -3.12 9.06 37.16 0.34 -2.78 16 19 N -0.72 -18.85 5.10 -53.42 -0.27 -19.12 16 20 C -0.24 -6.74 9.93 -15.06 -0.15 -6.89 16 21 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -28.93 13.06 55.49 0.72 -28.20 16 24 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 28 C 0.08 1.27 5.84 -3.53 -0.02 1.25 16 29 C -0.12 -1.24 9.34 -39.05 -0.36 -1.60 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 32 H 0.07 0.24 8.10 -51.93 -0.42 -0.18 16 33 H 0.14 0.54 8.06 -52.48 -0.42 0.11 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.24 8.08 -51.93 -0.42 -0.18 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.15 1.71 4.19 -78.49 -0.33 1.38 16 39 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 40 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 1.17 7.56 -51.93 -0.39 0.78 16 43 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16 44 H 0.39 11.01 7.59 -40.82 -0.31 10.70 16 45 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.08 1.25 6.28 -51.93 -0.33 0.93 16 47 H 0.10 1.64 7.06 -51.93 -0.37 1.27 16 48 H 0.15 1.51 7.67 -52.49 -0.40 1.11 16 LS Contribution 386.33 15.07 5.82 5.82 Total: -1.00 -34.52 386.33 -8.82 -43.34 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -7.49 Total: 7.97 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.77 Total: 2.87 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.11 Total: -61.59 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.24 Total: -16.31 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.52 -8.82 -43.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282912077.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.921 kcal (2) G-P(sol) polarization free energy of solvation -34.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds