Wall clock time and date at job start Tue Mar 31 2020 17:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38627 * 120.76043 * 2 1 4 4 C 1.38556 * 119.35370 * 180.28407 * 3 2 1 5 5 C 1.50702 * 119.54893 * 179.70830 * 4 3 2 6 6 N 1.31524 * 120.90004 * 359.43386 * 4 3 2 7 7 C 1.32711 * 121.64568 * 0.27725 * 6 4 3 8 8 C 1.48171 * 119.72086 * 180.02562 * 7 6 4 9 9 O 1.21518 * 119.99604 * 188.63368 * 8 7 6 10 10 N 1.34771 * 120.00218 * 8.63016 * 8 7 6 11 11 C 1.47149 * 120.98278 * 7.04711 * 10 8 7 12 12 C 1.53713 * 108.16588 * 129.43203 * 11 10 8 13 13 O 1.42960 * 109.14657 * 52.53449 * 12 11 10 14 14 C 1.42968 * 114.16783 * 297.29408 * 13 12 11 15 15 H 1.09003 * 109.55157 * 302.62762 * 14 13 12 16 16 C 1.52994 * 109.51186 * 182.50573 * 14 13 12 17 17 H 1.09004 * 109.47321 * 185.25170 * 16 14 13 18 18 C 1.53002 * 109.47380 * 305.25317 * 16 14 13 19 19 N 1.46506 * 109.47378 * 65.25272 * 16 14 13 20 20 C 1.36939 * 120.00153 * 155.00019 * 19 16 14 21 21 H 1.07997 * 119.99953 * 0.02562 * 20 19 16 22 22 C 1.38810 * 119.99695 * 179.97438 * 20 19 16 23 23 N 1.31616 * 120.00512 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99885 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47079 * 59.99843 * 24 22 20 26 26 H 1.48495 * 109.47390 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46999 * 300.00182 * 24 22 20 28 28 C 1.47153 * 120.98232 * 187.32253 * 10 8 7 29 29 C 1.38593 * 120.75220 * 179.72300 * 2 1 3 30 30 H 1.09000 * 109.47189 * 270.27527 * 1 2 3 31 31 H 1.08997 * 109.46544 * 30.26914 * 1 2 3 32 32 H 1.08997 * 109.47394 * 150.27415 * 1 2 3 33 33 H 1.08002 * 120.32185 * 359.97438 * 3 2 1 34 34 H 1.09007 * 109.46935 * 269.72945 * 5 4 3 35 35 H 1.09000 * 109.46998 * 149.73332 * 5 4 3 36 36 H 1.09003 * 109.47149 * 29.72970 * 5 4 3 37 37 H 1.09004 * 109.68021 * 249.20951 * 11 10 8 38 38 H 1.09001 * 109.68363 * 9.75886 * 11 10 8 39 39 H 1.09003 * 109.65272 * 292.57356 * 12 11 10 40 40 H 1.08995 * 109.48846 * 172.39654 * 12 11 10 41 41 H 1.09001 * 109.47017 * 180.02562 * 18 16 14 42 42 H 1.09005 * 109.46547 * 300.00271 * 18 16 14 43 43 H 1.08996 * 109.47253 * 59.99867 * 18 16 14 44 44 H 0.96998 * 119.99703 * 334.99648 * 19 16 14 45 45 H 0.96993 * 120.00326 * 180.02562 * 23 22 20 46 46 H 1.09007 * 109.68208 * 350.24285 * 28 10 8 47 47 H 1.09004 * 109.68088 * 110.78576 * 28 10 8 48 48 H 1.07998 * 120.47288 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2160 1.1912 0.0000 4 6 3.6012 1.1572 -0.0060 5 6 4.3763 2.4496 -0.0127 6 7 4.2487 0.0125 -0.0005 7 6 3.6082 -1.1498 0.0055 8 6 4.3806 -2.4142 0.0121 9 8 3.8094 -3.4759 -0.1405 10 7 5.7166 -2.3869 0.1872 11 6 6.4106 -1.1344 0.5262 12 6 7.3072 -1.3985 1.7465 13 8 8.1371 -2.5321 1.4821 14 6 7.4167 -3.7500 1.2779 15 1 6.7973 -3.9581 2.1503 16 6 8.4048 -4.8989 1.0669 17 1 7.8572 -5.8083 0.8191 18 6 9.3571 -4.5489 -0.0784 19 7 9.1752 -5.1122 2.2946 20 6 9.7264 -6.3389 2.5527 21 1 9.5936 -7.1490 1.8510 22 6 10.4568 -6.5407 3.7157 23 7 10.6200 -5.5530 4.5702 24 14 11.2082 -8.2143 4.0682 25 1 12.1571 -8.5695 2.9824 26 1 11.9323 -8.1689 5.3638 27 1 10.1320 -9.2351 4.1386 28 6 6.5252 -3.6074 0.0392 29 6 2.2157 -1.1910 0.0058 30 1 -0.3633 0.0049 1.0276 31 1 -0.3632 0.8876 -0.5180 32 1 -0.3634 -0.8924 -0.5095 33 1 1.6938 2.1366 -0.0004 34 1 4.5628 2.7561 -1.0420 35 1 5.3266 2.3059 0.5015 36 1 3.8001 3.2215 0.4975 37 1 7.0204 -0.8125 -0.3181 38 1 5.6792 -0.3628 0.7666 39 1 6.6873 -1.5972 2.6208 40 1 7.9323 -0.5256 1.9342 41 1 10.0607 -5.3677 -0.2289 42 1 8.7838 -4.3903 -0.9918 43 1 9.9047 -3.6397 0.1694 44 1 9.2949 -4.3845 2.9247 45 1 11.1307 -5.6940 5.3827 46 1 5.8695 -4.4744 -0.0431 47 1 7.1462 -3.5304 -0.8533 48 1 1.6958 -2.1377 0.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282912078.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:12 Heat of formation + Delta-G solvation = -14.272079 kcal Electronic energy + Delta-G solvation = -29098.234813 eV Core-core repulsion = 25154.306769 eV Total energy + Delta-G solvation = -3943.928045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.24705 -39.75619 -38.22755 -35.55153 -34.84190 -34.23369 -33.17380 -32.33897 -30.17211 -28.57797 -28.31259 -27.99779 -27.29231 -25.09778 -24.07570 -23.33753 -22.04391 -21.60506 -19.74048 -19.46919 -17.69743 -17.19444 -16.79294 -16.49353 -16.10349 -15.76856 -15.67889 -15.12778 -14.75855 -14.55783 -14.35144 -14.21499 -13.86776 -13.78665 -13.44307 -13.27813 -13.16010 -13.06438 -12.83697 -12.63133 -12.54243 -12.39605 -12.13781 -11.99613 -11.78227 -11.22648 -11.03753 -10.78027 -10.67084 -10.50135 -10.40005 -10.24720 -9.96759 -9.94011 -9.73471 -9.60391 -9.37614 -9.15309 -8.83452 -8.35411 -6.87500 -5.68009 -2.96547 0.31486 0.75383 2.50524 2.78840 3.45879 3.49356 3.53335 3.54501 3.65921 4.11943 4.15036 4.19322 4.55335 4.63605 4.63984 4.78227 4.91351 4.99380 5.06113 5.09636 5.19250 5.20934 5.26038 5.32903 5.37253 5.42159 5.44905 5.58630 5.63796 5.66365 5.75293 5.81734 5.84170 5.91778 6.00159 6.06136 6.11720 6.25328 6.31673 6.54013 6.56221 6.72498 6.89134 7.22153 7.26306 7.40861 7.60901 7.76379 8.01439 8.50281 9.61866 10.20257 10.57106 11.54484 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022449 B = 0.002482 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.984458 B =11277.040831 C =11705.407722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.043 4.043 3 C -0.154 4.154 4 C 0.125 3.875 5 C -0.106 4.106 6 N -0.455 5.455 7 C 0.095 3.905 8 C 0.568 3.432 9 O -0.535 6.535 10 N -0.589 5.589 11 C 0.045 3.955 12 C 0.044 3.956 13 O -0.361 6.361 14 C 0.078 3.922 15 H 0.062 0.938 16 C 0.185 3.815 17 H 0.059 0.941 18 C -0.162 4.162 19 N -0.719 5.719 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 C 0.079 3.921 29 C -0.119 4.119 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.139 0.861 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.148 0.852 39 H 0.048 0.952 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.034 0.966 43 H 0.057 0.943 44 H 0.389 0.611 45 H 0.255 0.745 46 H 0.099 0.901 47 H 0.083 0.917 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.740 19.476 -11.212 29.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.051 4.051 3 C -0.174 4.174 4 C -0.014 4.014 5 C -0.163 4.163 6 N -0.169 5.169 7 C -0.043 4.043 8 C 0.355 3.645 9 O -0.411 6.411 10 N -0.321 5.321 11 C -0.078 4.078 12 C -0.034 4.034 13 O -0.279 6.279 14 C 0.019 3.981 15 H 0.080 0.920 16 C 0.074 3.926 17 H 0.077 0.923 18 C -0.222 4.222 19 N -0.360 5.360 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 C -0.043 4.043 29 C -0.140 4.140 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.157 0.843 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.164 0.836 39 H 0.066 0.934 40 H 0.118 0.882 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.223 0.777 45 H 0.064 0.936 46 H 0.118 0.882 47 H 0.101 0.899 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.866 18.695 -11.277 28.855 hybrid contribution -0.540 -0.630 0.441 0.939 sum -19.406 18.065 -10.836 28.642 Atomic orbital electron populations 1.20854 0.89541 1.03699 1.03284 1.20376 0.97208 0.92467 0.95002 1.22052 0.94717 0.98915 1.01700 1.21496 0.91388 0.94081 0.94402 1.20768 1.00510 0.91480 1.03519 1.67469 1.38820 0.97791 1.12790 1.21160 0.91756 0.91910 0.99440 1.17893 0.81846 0.87308 0.77489 1.90785 1.69284 1.30338 1.50729 1.47999 1.05749 1.10979 1.67351 1.23717 0.98348 0.87362 0.98370 1.23082 0.94022 0.90459 0.95872 1.88075 1.32457 1.15971 1.91389 1.22919 0.93677 0.86166 0.95382 0.91977 1.20196 0.90940 0.92378 0.89065 0.92349 1.22409 1.00445 1.02003 0.97326 1.42349 1.61428 1.12119 1.20150 1.19210 1.25682 0.88967 1.03052 0.91234 1.24735 1.01343 0.97532 0.97381 1.69667 1.45530 1.30723 1.12079 0.86280 0.78987 0.83853 0.77137 1.21312 1.21772 1.21329 1.22577 0.94191 0.87681 0.99853 1.21989 0.93607 0.99692 0.98726 0.90130 0.90745 0.90588 0.84305 0.90018 0.89969 0.90441 0.90979 0.83583 0.93375 0.88151 0.92942 0.94705 0.92410 0.77677 0.93559 0.88239 0.89922 0.83393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 10.06 36.01 0.36 -0.19 16 2 C -0.04 -0.33 5.91 -104.35 -0.62 -0.94 16 3 C -0.15 -1.05 9.45 -39.32 -0.37 -1.42 16 4 C 0.13 1.02 6.78 -82.61 -0.56 0.46 16 5 C -0.11 -0.53 10.17 36.01 0.37 -0.17 16 6 N -0.45 -4.91 6.04 -6.06 -0.04 -4.95 16 7 C 0.09 1.18 6.59 -83.01 -0.55 0.63 16 8 C 0.57 8.67 7.67 -12.18 -0.09 8.58 16 9 O -0.53 -9.47 15.83 5.35 0.08 -9.38 16 10 N -0.59 -8.80 3.01 -173.01 -0.52 -9.32 16 11 C 0.04 0.57 6.06 -3.32 -0.02 0.55 16 12 C 0.04 0.62 7.00 37.53 0.26 0.89 16 13 O -0.36 -6.61 9.24 -35.23 -0.33 -6.94 16 14 C 0.08 1.44 2.61 -26.59 -0.07 1.37 16 15 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 16 C 0.18 3.88 2.77 -67.93 -0.19 3.69 16 17 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 18 C -0.16 -3.12 9.06 37.16 0.34 -2.78 16 19 N -0.72 -18.86 5.10 -53.42 -0.27 -19.14 16 20 C -0.24 -6.79 9.93 -15.06 -0.15 -6.94 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -28.95 13.06 55.49 0.72 -28.22 16 24 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 28 C 0.08 1.27 5.84 -3.54 -0.02 1.25 16 29 C -0.12 -1.24 9.33 -39.05 -0.36 -1.60 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.24 8.10 -51.93 -0.42 -0.18 16 32 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 33 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.24 8.07 -51.93 -0.42 -0.18 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.15 1.71 4.18 -78.72 -0.33 1.38 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16 43 H 0.06 1.17 7.55 -51.93 -0.39 0.78 16 44 H 0.39 11.02 7.59 -40.82 -0.31 10.71 16 45 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.10 1.64 7.06 -51.92 -0.37 1.27 16 47 H 0.08 1.25 6.27 -51.93 -0.33 0.93 16 48 H 0.15 1.51 7.67 -52.49 -0.40 1.11 16 LS Contribution 386.35 15.07 5.82 5.82 Total: -1.00 -34.49 386.35 -8.81 -43.30 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.49 Total: 8.07 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -1.77 Total: 2.85 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -0.11 Total: -61.63 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.24 Total: -16.32 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.49 -8.81 -43.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282912078.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.027 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds