Wall clock time and date at job start Tue Mar 31 2020 17:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38627 * 120.76043 * 2 1 4 4 C 1.38556 * 119.35370 * 180.28407 * 3 2 1 5 5 C 1.50702 * 119.54893 * 179.70830 * 4 3 2 6 6 N 1.31524 * 120.90004 * 359.43386 * 4 3 2 7 7 C 1.32711 * 121.64568 * 0.27725 * 6 4 3 8 8 C 1.48171 * 119.72086 * 180.02562 * 7 6 4 9 9 O 1.21518 * 119.99604 * 188.63368 * 8 7 6 10 10 N 1.34771 * 120.00218 * 8.63016 * 8 7 6 11 11 C 1.47149 * 120.98278 * 7.04711 * 10 8 7 12 12 C 1.53713 * 108.16588 * 129.43203 * 11 10 8 13 13 O 1.42960 * 109.14657 * 52.53449 * 12 11 10 14 14 C 1.42968 * 114.16783 * 297.29408 * 13 12 11 15 15 H 1.09003 * 109.55157 * 302.62762 * 14 13 12 16 16 C 1.52994 * 109.51186 * 182.50573 * 14 13 12 17 17 H 1.09004 * 109.47321 * 185.25170 * 16 14 13 18 18 C 1.53002 * 109.47380 * 305.25317 * 16 14 13 19 19 N 1.46506 * 109.47378 * 65.25272 * 16 14 13 20 20 C 1.36939 * 120.00153 * 155.00019 * 19 16 14 21 21 H 1.07997 * 119.99953 * 0.02562 * 20 19 16 22 22 C 1.38810 * 119.99695 * 179.97438 * 20 19 16 23 23 N 1.31616 * 120.00512 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99885 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47079 * 59.99843 * 24 22 20 26 26 H 1.48495 * 109.47390 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46999 * 300.00182 * 24 22 20 28 28 C 1.47153 * 120.98232 * 187.32253 * 10 8 7 29 29 C 1.38593 * 120.75220 * 179.72300 * 2 1 3 30 30 H 1.09000 * 109.47189 * 270.27527 * 1 2 3 31 31 H 1.08997 * 109.46544 * 30.26914 * 1 2 3 32 32 H 1.08997 * 109.47394 * 150.27415 * 1 2 3 33 33 H 1.08002 * 120.32185 * 359.97438 * 3 2 1 34 34 H 1.09007 * 109.46935 * 269.72945 * 5 4 3 35 35 H 1.09000 * 109.46998 * 149.73332 * 5 4 3 36 36 H 1.09003 * 109.47149 * 29.72970 * 5 4 3 37 37 H 1.09004 * 109.68021 * 249.20951 * 11 10 8 38 38 H 1.09001 * 109.68363 * 9.75886 * 11 10 8 39 39 H 1.09003 * 109.65272 * 292.57356 * 12 11 10 40 40 H 1.08995 * 109.48846 * 172.39654 * 12 11 10 41 41 H 1.09001 * 109.47017 * 180.02562 * 18 16 14 42 42 H 1.09005 * 109.46547 * 300.00271 * 18 16 14 43 43 H 1.08996 * 109.47253 * 59.99867 * 18 16 14 44 44 H 0.96998 * 119.99703 * 334.99648 * 19 16 14 45 45 H 0.96993 * 120.00326 * 180.02562 * 23 22 20 46 46 H 1.09007 * 109.68208 * 350.24285 * 28 10 8 47 47 H 1.09004 * 109.68088 * 110.78576 * 28 10 8 48 48 H 1.07998 * 120.47288 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2160 1.1912 0.0000 4 6 3.6012 1.1572 -0.0060 5 6 4.3763 2.4496 -0.0127 6 7 4.2487 0.0125 -0.0005 7 6 3.6082 -1.1498 0.0055 8 6 4.3806 -2.4142 0.0121 9 8 3.8094 -3.4759 -0.1405 10 7 5.7166 -2.3869 0.1872 11 6 6.4106 -1.1344 0.5262 12 6 7.3072 -1.3985 1.7465 13 8 8.1371 -2.5321 1.4821 14 6 7.4167 -3.7500 1.2779 15 1 6.7973 -3.9581 2.1503 16 6 8.4048 -4.8989 1.0669 17 1 7.8572 -5.8083 0.8191 18 6 9.3571 -4.5489 -0.0784 19 7 9.1752 -5.1122 2.2946 20 6 9.7264 -6.3389 2.5527 21 1 9.5936 -7.1490 1.8510 22 6 10.4568 -6.5407 3.7157 23 7 10.6200 -5.5530 4.5702 24 14 11.2082 -8.2143 4.0682 25 1 12.1571 -8.5695 2.9824 26 1 11.9323 -8.1689 5.3638 27 1 10.1320 -9.2351 4.1386 28 6 6.5252 -3.6074 0.0392 29 6 2.2157 -1.1910 0.0058 30 1 -0.3633 0.0049 1.0276 31 1 -0.3632 0.8876 -0.5180 32 1 -0.3634 -0.8924 -0.5095 33 1 1.6938 2.1366 -0.0004 34 1 4.5628 2.7561 -1.0420 35 1 5.3266 2.3059 0.5015 36 1 3.8001 3.2215 0.4975 37 1 7.0204 -0.8125 -0.3181 38 1 5.6792 -0.3628 0.7666 39 1 6.6873 -1.5972 2.6208 40 1 7.9323 -0.5256 1.9342 41 1 10.0607 -5.3677 -0.2289 42 1 8.7838 -4.3903 -0.9918 43 1 9.9047 -3.6397 0.1694 44 1 9.2949 -4.3845 2.9247 45 1 11.1307 -5.6940 5.3827 46 1 5.8695 -4.4744 -0.0431 47 1 7.1462 -3.5304 -0.8533 48 1 1.6958 -2.1377 0.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282912078.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:11 Heat of formation + Delta-G solvation = -37.119202 kcal Electronic energy + Delta-G solvation = -29099.225539 eV Core-core repulsion = 25154.306769 eV Total energy + Delta-G solvation = -3944.918770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.13392 -40.84060 -39.51646 -37.16247 -36.00636 -35.09554 -34.37106 -33.76088 -31.83394 -29.97666 -29.12990 -28.78608 -28.27157 -26.60418 -25.48004 -24.75402 -23.35122 -22.22100 -21.23558 -20.65909 -19.30966 -18.59800 -17.89344 -17.32502 -17.15241 -17.06694 -16.76781 -16.63196 -16.09270 -15.85449 -15.58411 -15.34559 -15.13546 -14.82158 -14.43985 -14.42208 -14.16394 -14.07406 -13.93871 -13.57008 -13.51083 -13.15964 -13.10286 -13.06671 -12.84780 -12.78752 -12.54334 -12.46008 -12.37725 -12.22611 -11.88302 -11.65580 -11.65008 -11.48054 -11.18641 -10.93305 -10.55357 -10.11499 -10.02080 -9.59871 -9.01618 -7.92030 -5.21298 -0.45543 0.11825 1.46593 1.50486 1.52995 1.56273 1.67882 2.56614 2.66351 2.74872 2.89524 3.40389 3.43307 3.58043 3.64011 3.90560 3.92742 3.96544 3.99088 4.03350 4.16874 4.24496 4.32821 4.38422 4.45084 4.54299 4.58897 4.62437 4.70504 4.72775 4.77880 4.79903 4.87085 4.93036 5.00044 5.03292 5.08027 5.10992 5.23762 5.25746 5.28702 5.37574 5.50814 5.60374 5.71554 6.14881 6.23412 6.29265 6.60596 6.91391 7.35008 8.10019 8.35682 9.31468 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022449 B = 0.002482 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.984458 B =11277.040831 C =11705.407722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.042 4.042 3 C -0.140 4.140 4 C 0.118 3.882 5 C -0.104 4.104 6 N -0.470 5.470 7 C 0.066 3.934 8 C 0.563 3.437 9 O -0.571 6.571 10 N -0.594 5.594 11 C 0.053 3.947 12 C 0.039 3.961 13 O -0.382 6.382 14 C 0.092 3.908 15 H 0.036 0.964 16 C 0.177 3.823 17 H 0.060 0.940 18 C -0.148 4.148 19 N -0.733 5.733 20 C -0.241 4.241 21 H 0.077 0.923 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.975 3.025 25 H -0.277 1.277 26 H -0.296 1.296 27 H -0.278 1.278 28 C 0.089 3.911 29 C -0.131 4.131 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.179 0.821 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.164 0.836 39 H 0.038 0.962 40 H 0.127 0.873 41 H 0.039 0.961 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.375 0.625 45 H 0.250 0.750 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.218 21.777 -12.532 32.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.049 4.049 3 C -0.159 4.159 4 C -0.021 4.021 5 C -0.161 4.161 6 N -0.185 5.185 7 C -0.069 4.069 8 C 0.351 3.649 9 O -0.451 6.451 10 N -0.325 5.325 11 C -0.068 4.068 12 C -0.039 4.039 13 O -0.301 6.301 14 C 0.032 3.968 15 H 0.054 0.946 16 C 0.068 3.932 17 H 0.077 0.923 18 C -0.207 4.207 19 N -0.373 5.373 20 C -0.372 4.372 21 H 0.095 0.905 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.804 3.196 25 H -0.203 1.203 26 H -0.222 1.222 27 H -0.204 1.204 28 C -0.034 4.034 29 C -0.152 4.152 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.196 0.804 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.180 0.820 39 H 0.057 0.943 40 H 0.145 0.855 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.206 0.794 45 H 0.059 0.941 46 H 0.109 0.891 47 H 0.114 0.886 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.363 21.005 -12.647 31.872 hybrid contribution -0.205 -1.183 0.805 1.445 sum -20.568 19.822 -11.842 30.922 Atomic orbital electron populations 1.20938 0.87246 1.04815 1.04205 1.20735 0.98783 0.91678 0.93750 1.22510 0.94275 1.00105 0.99014 1.22111 0.92580 0.94097 0.93321 1.20887 1.00368 0.90364 1.04483 1.67250 1.39441 0.98042 1.13722 1.20773 0.92119 0.91308 1.02723 1.18430 0.81805 0.88201 0.76433 1.90743 1.69931 1.31981 1.52406 1.48105 1.05931 1.11089 1.67384 1.23822 0.98327 0.86835 0.97824 1.23349 0.94353 0.89845 0.96305 1.88029 1.33774 1.16643 1.91620 1.22540 0.92754 0.85901 0.95573 0.94566 1.20419 0.91288 0.93665 0.87794 0.92256 1.22206 0.99856 1.00783 0.97872 1.42523 1.62070 1.11056 1.21622 1.19626 1.24769 0.89911 1.02936 0.90470 1.25590 1.02613 1.01283 0.97533 1.69840 1.46873 1.32867 1.12531 0.85192 0.78201 0.79534 0.76714 1.20294 1.22199 1.20437 1.22347 0.93893 0.88387 0.98788 1.22056 0.93053 1.00724 0.99392 0.89161 0.88447 0.90705 0.80411 0.88979 0.90379 0.87851 0.90075 0.82008 0.94348 0.85545 0.94189 0.91220 0.93538 0.79354 0.94110 0.89090 0.88642 0.84341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.06 71.24 0.72 -0.03 16 2 C -0.04 -0.54 5.91 -19.69 -0.12 -0.66 16 3 C -0.14 -1.39 9.45 22.44 0.21 -1.18 16 4 C 0.12 1.59 6.78 42.68 0.29 1.88 16 5 C -0.10 -0.69 10.17 71.24 0.72 0.04 16 6 N -0.47 -9.56 6.04 -173.08 -1.04 -10.60 16 7 C 0.07 1.65 6.59 41.91 0.28 1.93 16 8 C 0.56 17.72 7.67 86.88 0.67 18.39 16 9 O -0.57 -21.25 15.83 -3.77 -0.06 -21.31 16 10 N -0.59 -17.98 3.01 -819.58 -2.47 -20.45 16 11 C 0.05 1.34 6.06 86.50 0.52 1.86 16 12 C 0.04 1.10 7.00 72.22 0.51 1.60 16 13 O -0.38 -14.21 9.24 -148.98 -1.38 -15.59 16 14 C 0.09 3.49 2.61 30.69 0.08 3.57 16 15 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 16 C 0.18 7.59 2.77 44.99 0.12 7.71 16 17 H 0.06 2.52 8.08 -2.38 -0.02 2.50 16 18 C -0.15 -5.64 9.06 71.98 0.65 -4.99 16 19 N -0.73 -39.55 5.10 -322.93 -1.65 -41.20 16 20 C -0.24 -13.96 9.93 84.03 0.83 -13.13 16 21 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 22 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 23 N -0.97 -61.87 13.06 21.65 0.28 -61.59 16 24 Si 0.97 47.78 29.55 68.60 2.03 49.80 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 27 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 28 C 0.09 2.88 5.84 86.35 0.50 3.39 16 29 C -0.13 -2.70 9.33 22.61 0.21 -2.48 16 30 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.10 0.22 8.10 -2.39 -0.02 0.20 16 32 H 0.07 0.53 8.10 -2.39 -0.02 0.51 16 33 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 34 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.10 0.17 8.07 -2.39 -0.02 0.15 16 37 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.16 3.63 4.18 -55.29 -0.23 3.40 16 39 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 2.15 6.42 -2.38 -0.02 2.14 16 43 H 0.05 1.87 7.55 -2.39 -0.02 1.85 16 44 H 0.37 22.07 7.59 -92.71 -0.70 21.37 16 45 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 46 H 0.09 3.10 7.06 -2.38 -0.02 3.09 16 47 H 0.10 2.82 6.27 -2.38 -0.01 2.81 16 48 H 0.14 2.99 7.67 -2.91 -0.02 2.96 16 Total: -1.00 -77.55 386.35 2.43 -75.12 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.05 Total: 32.10 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 6.67 Total: 13.70 kcal Atomic # 7 Polarization: -128.96 SS G_CDS: -4.88 Total: -133.84 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -1.44 Total: -36.90 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.80 kcal Total: -77.55 2.43 -75.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282912078.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.004 kcal (2) G-P(sol) polarization free energy of solvation -77.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds