Wall clock time and date at job start Tue Mar 31 2020 17:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35737 * 117.00126 * 2 1 4 4 C 1.39286 * 120.84814 * 0.23902 * 3 2 1 5 5 C 1.37952 * 119.08828 * 180.29818 * 4 3 2 6 6 N 1.31966 * 120.82683 * 359.70275 * 5 4 3 7 7 C 1.31948 * 121.86729 * 0.02562 * 6 5 4 8 8 C 1.37994 * 120.81953 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.45394 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.47197 * 265.00249 * 9 8 7 11 11 O 1.21278 * 120.00483 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99864 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00183 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.45988 * 60.02593 * 13 12 10 15 15 C 1.53046 * 109.46379 * 180.02562 * 13 12 10 16 16 C 1.53187 * 109.31183 * 58.65304 * 15 13 12 17 17 N 1.46927 * 108.77406 * 54.63732 * 16 15 13 18 18 C 1.36943 * 120.63120 * 126.36883 * 17 16 15 19 19 H 1.08000 * 119.99888 * 332.45081 * 18 17 16 20 20 C 1.38811 * 119.99955 * 152.45061 * 18 17 16 21 21 N 1.31614 * 120.00254 * 342.76805 * 20 18 17 22 22 Si 1.86801 * 119.99678 * 162.77313 * 20 18 17 23 23 H 1.48501 * 109.46686 * 269.99566 * 22 20 18 24 24 H 1.48499 * 109.47518 * 29.99570 * 22 20 18 25 25 H 1.48502 * 109.46873 * 149.99729 * 22 20 18 26 26 C 1.46923 * 118.73893 * 306.64252 * 17 16 15 27 27 C 1.52755 * 109.00900 * 53.31139 * 26 17 16 28 28 H 1.08998 * 109.47161 * 300.00941 * 1 2 3 29 29 H 1.09001 * 109.46692 * 60.00491 * 1 2 3 30 30 H 1.09000 * 109.47566 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.45056 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.57962 * 179.72801 * 5 4 3 33 33 H 1.08003 * 119.59076 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.46573 * 145.00088 * 9 8 7 35 35 H 1.09003 * 109.46568 * 25.00705 * 9 8 7 36 36 H 0.97008 * 120.00139 * 0.02562 * 12 10 9 37 37 H 1.09005 * 109.47293 * 179.97438 * 14 13 12 38 38 H 1.08992 * 109.47271 * 299.97103 * 14 13 12 39 39 H 1.09000 * 109.47037 * 59.97909 * 14 13 12 40 40 H 1.09004 * 109.49497 * 298.70538 * 15 13 12 41 41 H 1.08995 * 109.52949 * 178.62445 * 15 13 12 42 42 H 1.09004 * 109.59162 * 294.84964 * 16 15 13 43 43 H 1.08995 * 109.70522 * 174.49161 * 16 15 13 44 44 H 0.96995 * 120.00322 * 180.02562 * 21 20 18 45 45 H 1.09005 * 109.58782 * 173.14413 * 26 17 16 46 46 H 1.09006 * 109.58879 * 293.56697 * 26 17 16 47 47 H 1.09007 * 109.56573 * 185.55521 * 27 26 17 48 48 H 1.08998 * 109.38819 * 65.51098 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3887 0.0050 5 6 1.9678 3.5980 -0.0015 6 7 3.2866 3.6456 -0.0063 7 6 4.0231 2.5509 -0.0058 8 6 3.4346 1.3027 0.0005 9 6 4.2838 0.0578 0.0005 10 6 4.4585 -0.4312 -1.4142 11 8 3.9445 0.1721 -2.3321 12 7 5.1860 -1.5389 -1.6593 13 6 5.3563 -2.0140 -3.0346 14 6 6.0430 -0.9294 -3.8671 15 6 6.2176 -3.2791 -3.0341 16 6 5.5432 -4.3507 -2.1719 17 7 4.1717 -4.5547 -2.6579 18 6 3.7275 -5.8073 -2.9880 19 1 4.4279 -6.5574 -3.3243 20 6 2.3769 -6.1128 -2.8902 21 7 1.5787 -5.3465 -2.1776 22 14 1.6924 -7.6117 -3.7702 23 1 1.2520 -7.2261 -5.1350 24 1 2.7461 -8.6537 -3.8659 25 1 0.5349 -8.1466 -3.0091 26 6 3.2879 -3.3883 -2.7889 27 6 3.9858 -2.3282 -3.6389 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 0.2246 2.3566 0.0094 32 1 1.4009 4.5173 -0.0021 33 1 5.1001 2.6326 -0.0103 34 1 3.7957 -0.7149 0.5944 35 1 5.2598 0.2838 0.4300 36 1 5.5969 -2.0217 -0.9250 37 1 6.1703 -1.2829 -4.8904 38 1 5.4294 -0.0287 -3.8676 39 1 7.0188 -0.7043 -3.4366 40 1 7.2015 -3.0491 -2.6252 41 1 6.3247 -3.6473 -4.0544 42 1 5.5176 -4.0214 -1.1332 43 1 6.0996 -5.2852 -2.2453 44 1 0.6351 -5.5602 -2.1090 45 1 2.3574 -3.6873 -3.2715 46 1 3.0746 -2.9788 -1.8014 47 1 3.3812 -1.4214 -3.6604 48 1 4.1133 -2.7046 -4.6538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324318254.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:04 Heat of formation + Delta-G solvation = -15.044055 kcal Electronic energy + Delta-G solvation = -30282.192455 eV Core-core repulsion = 26338.230935 eV Total energy + Delta-G solvation = -3943.961520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.83569 -39.81128 -38.17100 -37.30585 -34.37282 -33.31699 -31.88335 -31.23238 -30.79743 -29.87407 -27.94582 -27.41997 -27.33238 -24.07478 -22.92486 -22.86162 -22.21737 -21.07219 -20.17336 -18.57853 -18.34617 -17.17757 -17.03687 -16.66856 -15.75020 -15.44452 -15.06826 -14.87615 -14.70516 -14.46040 -14.21664 -13.90726 -13.80318 -13.43539 -13.38162 -13.22072 -13.09308 -13.03276 -12.45523 -12.27995 -11.95119 -11.66448 -11.58877 -11.54290 -11.38073 -11.19964 -11.04426 -10.90664 -10.72759 -10.34282 -10.19905 -9.93659 -9.71727 -9.56254 -9.51813 -9.23122 -9.01245 -8.64882 -8.48539 -8.43337 -6.64076 -5.76538 -3.18936 1.04408 1.36117 3.07728 3.14997 3.37989 3.45016 3.45512 3.53380 3.90098 4.37406 4.50505 4.58982 4.73731 4.86621 5.05641 5.09355 5.14165 5.23026 5.31644 5.37265 5.38547 5.49110 5.53815 5.55224 5.57778 5.64646 5.70344 5.92293 5.99174 6.05663 6.07765 6.16474 6.24178 6.42155 6.50475 6.52621 6.57705 6.69199 6.79097 6.87351 6.98209 7.17524 7.19940 7.46766 7.74828 7.81962 7.97106 8.01175 8.47069 8.70257 9.23726 9.87465 10.44020 11.31182 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013862 B = 0.003840 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.408145 B = 7289.757294 C = 8754.375522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.297 6.297 3 C 0.187 3.813 4 C -0.264 4.264 5 C 0.130 3.870 6 N -0.512 5.512 7 C 0.141 3.859 8 C -0.144 4.144 9 C -0.093 4.093 10 C 0.522 3.478 11 O -0.535 6.535 12 N -0.711 5.711 13 C 0.185 3.815 14 C -0.159 4.159 15 C -0.137 4.137 16 C 0.146 3.854 17 N -0.591 5.591 18 C -0.253 4.253 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.900 5.900 22 Si 0.900 3.100 23 H -0.288 1.288 24 H -0.279 1.279 25 H -0.292 1.292 26 C 0.180 3.820 27 C -0.150 4.150 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.137 0.863 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.396 0.604 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.014 0.986 43 H 0.054 0.946 44 H 0.252 0.748 45 H 0.081 0.919 46 H 0.017 0.983 47 H 0.070 0.930 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.563 13.966 6.251 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.207 6.207 3 C 0.133 3.867 4 C -0.285 4.285 5 C -0.026 4.026 6 N -0.224 5.224 7 C -0.014 4.014 8 C -0.147 4.147 9 C -0.133 4.133 10 C 0.308 3.692 11 O -0.412 6.412 12 N -0.363 5.363 13 C 0.100 3.900 14 C -0.217 4.217 15 C -0.177 4.177 16 C 0.020 3.980 17 N -0.314 5.314 18 C -0.383 4.383 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.544 5.544 22 Si 0.730 3.270 23 H -0.215 1.215 24 H -0.205 1.205 25 H -0.218 1.218 26 C 0.054 3.946 27 C -0.190 4.190 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.155 0.845 32 H 0.172 0.828 33 H 0.175 0.825 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.231 0.769 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.032 0.968 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.100 0.900 46 H 0.036 0.964 47 H 0.089 0.911 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.478 14.913 5.612 16.309 hybrid contribution -1.025 -1.807 -0.128 2.081 sum 2.454 13.106 5.484 14.418 Atomic orbital electron populations 1.23157 0.77614 1.04911 1.01065 1.86165 1.21968 1.25691 1.86894 1.19176 0.91937 0.84921 0.90701 1.22175 1.01459 0.93212 1.11668 1.22462 0.90334 0.96801 0.93043 1.67690 1.07093 1.31911 1.15676 1.22434 0.99996 0.86198 0.92794 1.19724 0.90913 0.96343 1.07752 1.20433 1.00581 0.96058 0.96268 1.20212 0.78059 0.80500 0.90440 1.90623 1.47569 1.57115 1.45865 1.46060 1.53220 1.27526 1.09470 1.20228 0.96457 0.92580 0.80741 1.22218 0.99811 1.00325 0.99395 1.22326 0.97121 0.95712 1.02503 1.20851 0.87681 0.95654 0.93856 1.44062 1.08241 1.03830 1.75267 1.19186 0.92091 0.89488 1.37509 0.91787 1.25008 0.97687 0.98018 0.98805 1.70050 1.04493 1.39906 1.39952 0.86327 0.78549 0.82658 0.79453 1.21507 1.20469 1.21834 1.20570 0.93717 0.84429 0.95856 1.22495 0.95680 1.00917 0.99923 0.92701 0.92390 0.87383 0.84510 0.82833 0.82530 0.87555 0.88169 0.76941 0.92451 0.90845 0.93563 0.92678 0.90861 0.96825 0.92735 0.93797 0.90031 0.96442 0.91116 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.84 101.05 0.99 1.30 16 2 O -0.30 -4.48 9.77 -18.92 -0.18 -4.66 16 3 C 0.19 2.66 6.70 -38.82 -0.26 2.40 16 4 C -0.26 -3.15 9.11 -39.30 -0.36 -3.51 16 5 C 0.13 1.51 11.17 -17.60 -0.20 1.32 16 6 N -0.51 -6.82 10.36 -13.33 -0.14 -6.96 16 7 C 0.14 1.81 10.84 -17.59 -0.19 1.61 16 8 C -0.14 -1.97 4.40 -104.33 -0.46 -2.43 16 9 C -0.09 -1.18 5.60 -29.04 -0.16 -1.34 16 10 C 0.52 8.39 7.24 -10.99 -0.08 8.31 16 11 O -0.53 -10.35 12.25 5.56 0.07 -10.29 16 12 N -0.71 -11.03 4.10 -47.57 -0.20 -11.23 16 13 C 0.19 3.15 0.66 -131.77 -0.09 3.07 16 14 C -0.16 -2.47 8.40 37.16 0.31 -2.15 16 15 C -0.14 -2.25 4.96 -26.61 -0.13 -2.39 16 16 C 0.15 2.89 6.25 -3.71 -0.02 2.87 16 17 N -0.59 -14.54 3.00 -172.58 -0.52 -15.06 16 18 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 19 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 20 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 21 N -0.90 -26.04 11.19 55.49 0.62 -25.42 16 22 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 C 0.18 4.38 5.03 -3.94 -0.02 4.36 16 27 C -0.15 -3.12 4.65 -26.83 -0.12 -3.24 16 28 H 0.05 0.47 7.70 -51.93 -0.40 0.07 16 29 H 0.06 0.60 7.72 -51.93 -0.40 0.20 16 30 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.14 1.27 6.47 -52.49 -0.34 0.94 16 32 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.16 1.59 8.06 -52.48 -0.42 1.16 16 34 H 0.11 1.37 7.78 -51.93 -0.40 0.97 16 35 H 0.10 0.91 8.06 -51.93 -0.42 0.49 16 36 H 0.40 5.40 7.27 -40.82 -0.30 5.10 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.27 6.17 -51.93 -0.32 0.95 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.01 0.27 6.94 -51.93 -0.36 -0.09 16 43 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 44 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.08 2.28 6.04 -51.93 -0.31 1.97 16 46 H 0.02 0.45 7.74 -51.93 -0.40 0.05 16 47 H 0.07 1.55 6.20 -51.92 -0.32 1.23 16 48 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 378.10 15.07 5.70 5.70 Total: -1.00 -33.61 378.10 -8.02 -41.62 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.32 Total: 6.47 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.02 Total: 3.15 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.23 Total: -58.66 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.12 Total: -14.95 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.61 -8.02 -41.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324318254.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.579 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds