Wall clock time and date at job start Tue Mar 31 2020 17:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35737 * 117.00126 * 2 1 4 4 C 1.39286 * 120.84814 * 0.23902 * 3 2 1 5 5 C 1.37952 * 119.08828 * 180.29818 * 4 3 2 6 6 N 1.31966 * 120.82683 * 359.70275 * 5 4 3 7 7 C 1.31948 * 121.86729 * 0.02562 * 6 5 4 8 8 C 1.37994 * 120.81953 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.45394 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.47197 * 265.00249 * 9 8 7 11 11 O 1.21278 * 120.00483 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99864 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00183 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.45988 * 60.02593 * 13 12 10 15 15 C 1.53046 * 109.46379 * 180.02562 * 13 12 10 16 16 C 1.53187 * 109.31183 * 58.65304 * 15 13 12 17 17 N 1.46927 * 108.77406 * 54.63732 * 16 15 13 18 18 C 1.36943 * 120.63120 * 126.36883 * 17 16 15 19 19 H 1.08000 * 119.99888 * 332.45081 * 18 17 16 20 20 C 1.38811 * 119.99955 * 152.45061 * 18 17 16 21 21 N 1.31614 * 120.00254 * 342.76805 * 20 18 17 22 22 Si 1.86801 * 119.99678 * 162.77313 * 20 18 17 23 23 H 1.48501 * 109.46686 * 269.99566 * 22 20 18 24 24 H 1.48499 * 109.47518 * 29.99570 * 22 20 18 25 25 H 1.48502 * 109.46873 * 149.99729 * 22 20 18 26 26 C 1.46923 * 118.73893 * 306.64252 * 17 16 15 27 27 C 1.52755 * 109.00900 * 53.31139 * 26 17 16 28 28 H 1.08998 * 109.47161 * 300.00941 * 1 2 3 29 29 H 1.09001 * 109.46692 * 60.00491 * 1 2 3 30 30 H 1.09000 * 109.47566 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.45056 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.57962 * 179.72801 * 5 4 3 33 33 H 1.08003 * 119.59076 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.46573 * 145.00088 * 9 8 7 35 35 H 1.09003 * 109.46568 * 25.00705 * 9 8 7 36 36 H 0.97008 * 120.00139 * 0.02562 * 12 10 9 37 37 H 1.09005 * 109.47293 * 179.97438 * 14 13 12 38 38 H 1.08992 * 109.47271 * 299.97103 * 14 13 12 39 39 H 1.09000 * 109.47037 * 59.97909 * 14 13 12 40 40 H 1.09004 * 109.49497 * 298.70538 * 15 13 12 41 41 H 1.08995 * 109.52949 * 178.62445 * 15 13 12 42 42 H 1.09004 * 109.59162 * 294.84964 * 16 15 13 43 43 H 1.08995 * 109.70522 * 174.49161 * 16 15 13 44 44 H 0.96995 * 120.00322 * 180.02562 * 21 20 18 45 45 H 1.09005 * 109.58782 * 173.14413 * 26 17 16 46 46 H 1.09006 * 109.58879 * 293.56697 * 26 17 16 47 47 H 1.09007 * 109.56573 * 185.55521 * 27 26 17 48 48 H 1.08998 * 109.38819 * 65.51098 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3887 0.0050 5 6 1.9678 3.5980 -0.0015 6 7 3.2866 3.6456 -0.0063 7 6 4.0231 2.5509 -0.0058 8 6 3.4346 1.3027 0.0005 9 6 4.2838 0.0578 0.0005 10 6 4.4585 -0.4312 -1.4142 11 8 3.9445 0.1721 -2.3321 12 7 5.1860 -1.5389 -1.6593 13 6 5.3563 -2.0140 -3.0346 14 6 6.0430 -0.9294 -3.8671 15 6 6.2176 -3.2791 -3.0341 16 6 5.5432 -4.3507 -2.1719 17 7 4.1717 -4.5547 -2.6579 18 6 3.7275 -5.8073 -2.9880 19 1 4.4279 -6.5574 -3.3243 20 6 2.3769 -6.1128 -2.8902 21 7 1.5787 -5.3465 -2.1776 22 14 1.6924 -7.6117 -3.7702 23 1 1.2520 -7.2261 -5.1350 24 1 2.7461 -8.6537 -3.8659 25 1 0.5349 -8.1466 -3.0091 26 6 3.2879 -3.3883 -2.7889 27 6 3.9858 -2.3282 -3.6389 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 0.2246 2.3566 0.0094 32 1 1.4009 4.5173 -0.0021 33 1 5.1001 2.6326 -0.0103 34 1 3.7957 -0.7149 0.5944 35 1 5.2598 0.2838 0.4300 36 1 5.5969 -2.0217 -0.9250 37 1 6.1703 -1.2829 -4.8904 38 1 5.4294 -0.0287 -3.8676 39 1 7.0188 -0.7043 -3.4366 40 1 7.2015 -3.0491 -2.6252 41 1 6.3247 -3.6473 -4.0544 42 1 5.5176 -4.0214 -1.1332 43 1 6.0996 -5.2852 -2.2453 44 1 0.6351 -5.5602 -2.1090 45 1 2.3574 -3.6873 -3.2715 46 1 3.0746 -2.9788 -1.8014 47 1 3.3812 -1.4214 -3.6604 48 1 4.1133 -2.7046 -4.6538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324318254.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:03 Heat of formation + Delta-G solvation = -37.338388 kcal Electronic energy + Delta-G solvation = -30283.159210 eV Core-core repulsion = 26338.230935 eV Total energy + Delta-G solvation = -3944.928275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.86655 -41.11664 -39.17636 -38.79448 -36.09351 -34.37867 -33.56373 -32.35159 -32.16047 -31.59679 -29.12403 -28.88440 -28.30541 -25.91682 -24.01526 -23.86785 -23.82531 -22.62160 -21.51857 -20.10310 -19.31462 -18.75443 -18.15862 -18.05531 -16.85941 -16.75140 -16.56476 -16.19821 -15.89082 -15.67915 -15.59685 -15.23015 -15.17240 -14.94122 -14.84534 -14.58708 -14.38678 -14.14624 -13.92844 -13.41843 -13.20851 -13.18954 -12.97448 -12.89399 -12.73478 -12.57481 -12.50977 -12.46079 -12.19856 -12.10022 -11.95014 -11.73751 -11.31081 -11.27843 -10.55751 -10.52388 -10.45674 -10.06538 -9.85942 -9.68087 -8.64918 -7.85621 -5.30475 0.11917 0.37764 1.44601 1.46996 1.54740 1.84081 2.21376 2.37549 2.51153 2.90278 3.28839 3.51073 3.68191 3.71649 3.81839 3.85502 3.95245 4.09263 4.17097 4.17229 4.20799 4.28801 4.32376 4.44840 4.51128 4.65448 4.66283 4.70794 4.72748 4.78179 4.86575 4.90500 4.98112 5.00427 5.06658 5.12691 5.17133 5.25212 5.37198 5.40374 5.52352 5.61584 5.64816 5.72466 5.83723 6.24226 6.39663 6.78564 7.04324 7.16024 7.47650 7.88900 8.40170 9.19937 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013862 B = 0.003840 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.408145 B = 7289.757294 C = 8754.375522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.328 6.328 3 C 0.162 3.838 4 C -0.265 4.265 5 C 0.127 3.873 6 N -0.530 5.530 7 C 0.138 3.862 8 C -0.162 4.162 9 C -0.084 4.084 10 C 0.518 3.482 11 O -0.571 6.571 12 N -0.707 5.707 13 C 0.188 3.812 14 C -0.148 4.148 15 C -0.123 4.123 16 C 0.140 3.860 17 N -0.608 5.608 18 C -0.261 4.261 19 H 0.069 0.931 20 C -0.050 4.050 21 N -0.932 5.932 22 Si 0.962 3.038 23 H -0.291 1.291 24 H -0.265 1.265 25 H -0.296 1.296 26 C 0.199 3.801 27 C -0.138 4.138 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.160 0.840 32 H 0.186 0.814 33 H 0.181 0.819 34 H 0.101 0.899 35 H 0.141 0.859 36 H 0.407 0.593 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.025 0.975 43 H 0.058 0.942 44 H 0.247 0.753 45 H 0.036 0.964 46 H -0.006 1.006 47 H 0.053 0.947 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.584 14.670 6.640 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.239 6.239 3 C 0.108 3.892 4 C -0.286 4.286 5 C -0.029 4.029 6 N -0.242 5.242 7 C -0.018 4.018 8 C -0.166 4.166 9 C -0.124 4.124 10 C 0.305 3.695 11 O -0.450 6.450 12 N -0.359 5.359 13 C 0.102 3.898 14 C -0.206 4.206 15 C -0.162 4.162 16 C 0.015 3.985 17 N -0.331 5.331 18 C -0.392 4.392 19 H 0.086 0.914 20 C -0.246 4.246 21 N -0.578 5.578 22 Si 0.790 3.210 23 H -0.218 1.218 24 H -0.190 1.190 25 H -0.222 1.222 26 C 0.073 3.927 27 C -0.178 4.178 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.177 0.823 32 H 0.203 0.797 33 H 0.198 0.802 34 H 0.119 0.881 35 H 0.159 0.841 36 H 0.244 0.756 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.088 0.912 42 H 0.043 0.957 43 H 0.077 0.923 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.012 0.988 47 H 0.072 0.928 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.546 15.610 6.018 17.625 hybrid contribution -1.680 -2.002 -0.234 2.624 sum 3.865 13.608 5.785 15.284 Atomic orbital electron populations 1.23316 0.76260 1.05095 1.02607 1.86109 1.23685 1.26817 1.87306 1.19559 0.92707 0.85290 0.91665 1.22456 1.02653 0.92610 1.10886 1.23013 0.90160 0.97919 0.91822 1.67750 1.07956 1.32224 1.16260 1.22819 1.01167 0.85717 0.92065 1.19949 0.91076 0.97036 1.08492 1.20427 1.02581 0.95551 0.93886 1.20803 0.77104 0.80084 0.91478 1.90608 1.48837 1.58253 1.47329 1.46002 1.53229 1.27449 1.09216 1.20125 0.94106 0.93853 0.81689 1.22088 1.00408 0.98534 0.99620 1.22198 0.98451 0.93725 1.01858 1.21077 0.85207 0.97244 0.94951 1.44274 1.10022 1.02963 1.75880 1.19543 0.92411 0.90464 1.36746 0.91352 1.25747 0.98152 1.00873 0.99810 1.70206 1.04294 1.41738 1.41598 0.85346 0.77855 0.79916 0.77838 1.21773 1.18989 1.22247 1.20158 0.92656 0.85320 0.94591 1.22291 0.97848 0.98623 0.99058 0.89942 0.91977 0.87983 0.82296 0.79719 0.80224 0.88112 0.84115 0.75640 0.91805 0.92837 0.90852 0.88345 0.91203 0.95747 0.92314 0.94424 0.94512 0.98805 0.92842 0.93307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.84 113.37 1.12 1.60 16 2 O -0.33 -10.22 9.77 -90.60 -0.89 -11.10 16 3 C 0.16 4.60 6.70 22.77 0.15 4.75 16 4 C -0.27 -6.09 9.11 22.45 0.20 -5.88 16 5 C 0.13 2.75 11.17 84.60 0.95 3.70 16 6 N -0.53 -13.35 10.36 -196.09 -2.03 -15.38 16 7 C 0.14 3.33 10.84 84.62 0.92 4.24 16 8 C -0.16 -4.35 4.40 -19.68 -0.09 -4.43 16 9 C -0.08 -2.05 5.60 29.10 0.16 -1.89 16 10 C 0.52 16.33 7.24 87.66 0.63 16.97 16 11 O -0.57 -22.32 12.25 -3.02 -0.04 -22.35 16 12 N -0.71 -20.87 4.10 -422.81 -1.73 -22.60 16 13 C 0.19 6.12 0.66 3.63 0.00 6.12 16 14 C -0.15 -4.25 8.40 71.98 0.60 -3.64 16 15 C -0.12 -3.69 4.96 30.67 0.15 -3.54 16 16 C 0.14 5.31 6.25 86.36 0.54 5.85 16 17 N -0.61 -30.08 3.00 -699.93 -2.10 -32.18 16 18 C -0.26 -14.33 9.58 84.03 0.81 -13.52 16 19 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 20 C -0.05 -2.84 4.91 84.86 0.42 -2.42 16 21 N -0.93 -55.96 11.19 21.65 0.24 -55.72 16 22 Si 0.96 45.32 29.59 68.60 2.03 47.35 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 26 C 0.20 10.04 5.03 86.22 0.43 10.47 16 27 C -0.14 -5.85 4.65 30.53 0.14 -5.71 16 28 H 0.08 1.37 7.70 -2.39 -0.02 1.35 16 29 H 0.06 1.32 7.72 -2.39 -0.02 1.31 16 30 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.16 2.74 6.47 -2.91 -0.02 2.72 16 32 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 34 H 0.10 2.58 7.78 -2.39 -0.02 2.56 16 35 H 0.14 2.17 8.06 -2.39 -0.02 2.15 16 36 H 0.41 10.14 7.27 -92.70 -0.67 9.47 16 37 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.05 1.78 6.17 -2.39 -0.01 1.77 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 40 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 41 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.02 0.89 6.94 -2.38 -0.02 0.87 16 43 H 0.06 2.16 7.93 -2.39 -0.02 2.15 16 44 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 45 H 0.04 2.17 6.04 -2.38 -0.01 2.15 16 46 H -0.01 -0.33 7.74 -2.38 -0.02 -0.35 16 47 H 0.05 2.44 6.20 -2.38 -0.01 2.43 16 48 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -75.76 378.10 2.92 -72.83 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.30 Total: 26.48 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 7.14 Total: 12.67 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -5.62 Total: -125.89 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.92 Total: -33.46 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -75.76 2.92 -72.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324318254.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.495 kcal (2) G-P(sol) polarization free energy of solvation -75.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds