Wall clock time and date at job start Tue Mar 31 2020 18:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40195 * 120.36571 * 2 1 4 4 C 1.35348 * 119.95026 * 179.97438 * 3 2 1 5 5 N 1.35768 * 120.69826 * 359.97438 * 4 3 2 6 6 C 1.46499 * 119.62315 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47156 * 90.00069 * 6 5 4 8 8 O 1.21282 * 119.99698 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00096 * 179.97438 * 7 6 5 10 10 C 1.48114 * 127.03607 * 359.95990 * 9 7 6 11 11 C 1.54942 * 103.25311 * 140.74145 * 10 9 7 12 12 C 1.54614 * 102.83969 * 37.37977 * 11 10 9 13 13 C 1.52993 * 110.32981 * 97.03924 * 12 11 10 14 14 C 1.53000 * 110.32524 * 219.25781 * 12 11 10 15 15 N 1.46508 * 109.46980 * 295.61939 * 14 12 11 16 16 C 1.36935 * 119.99877 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00043 * 359.97438 * 16 15 14 18 18 C 1.38817 * 119.99750 * 180.02562 * 16 15 14 19 19 N 1.31614 * 119.99806 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99781 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47274 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47275 * 119.99874 * 20 18 16 23 23 H 1.48504 * 109.47024 * 240.00033 * 20 18 16 24 24 C 1.47485 * 127.02864 * 179.97438 * 9 7 6 25 25 C 1.34659 * 120.75117 * 0.29617 * 5 4 3 26 26 O 1.22060 * 119.98279 * 179.70391 * 25 5 4 27 27 C 1.36394 * 120.36897 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.46933 * 89.99603 * 1 2 3 29 29 H 1.08995 * 109.46927 * 209.99499 * 1 2 3 30 30 H 1.08996 * 109.46945 * 329.99735 * 1 2 3 31 31 H 1.07999 * 120.02901 * 359.96129 * 3 2 1 32 32 H 1.08004 * 119.65222 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.47609 * 330.00474 * 6 5 4 34 34 H 1.09002 * 109.47624 * 210.00170 * 6 5 4 35 35 H 1.08998 * 110.66152 * 259.18486 * 10 9 7 36 36 H 1.08999 * 110.65867 * 22.13220 * 10 9 7 37 37 H 1.08994 * 110.73972 * 279.03665 * 11 10 9 38 38 H 1.09004 * 110.73609 * 155.71278 * 11 10 9 39 39 H 1.08999 * 109.47492 * 304.37901 * 13 12 11 40 40 H 1.09005 * 109.47303 * 64.37971 * 13 12 11 41 41 H 1.09002 * 109.47437 * 184.37673 * 13 12 11 42 42 H 1.08997 * 109.47573 * 55.61851 * 14 12 11 43 43 H 1.08994 * 109.47450 * 175.62118 * 14 12 11 44 44 H 0.96994 * 119.99912 * 359.97438 * 15 14 12 45 45 H 0.97008 * 119.99527 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.91439 * 86.05464 * 24 9 7 47 47 H 1.08996 * 110.08042 * 324.86301 * 24 9 7 48 48 H 1.08003 * 120.34524 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1998 0.0005 5 7 4.2538 0.0274 0.0016 6 6 5.7187 0.0443 0.0027 7 6 6.2199 0.0507 1.4239 8 8 5.4311 0.0415 2.3451 9 7 7.5447 0.0655 1.6712 10 6 8.6386 0.0762 0.6727 11 6 9.6777 1.0429 1.2944 12 6 9.5866 0.7206 2.8039 13 6 10.6902 -0.2600 3.2055 14 6 9.6893 2.0051 3.6287 15 7 11.0123 2.6044 3.4365 16 6 11.3366 3.7687 4.0802 17 1 10.6170 4.2454 4.7292 18 6 12.5900 4.3368 3.8977 19 7 13.4668 3.7560 3.1063 20 14 13.0321 5.9254 4.7752 21 1 11.8807 6.3726 5.5996 22 1 14.2091 5.6961 5.6511 23 1 13.3578 6.9709 3.7721 24 6 8.2017 0.0741 2.9916 25 6 3.6017 -1.1507 -0.0039 26 8 4.2313 -2.1964 -0.0083 27 6 2.1966 -1.1768 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8899 0.5139 31 1 1.6822 2.1486 -0.0006 32 1 4.1103 2.1345 0.0009 33 1 6.0722 0.9381 -0.5112 34 1 6.0927 -0.8417 -0.5105 35 1 9.0626 -0.9211 0.5560 36 1 8.2815 0.4553 -0.2848 37 1 9.4024 2.0801 1.1039 38 1 10.6772 0.8316 0.9143 39 1 10.6274 -1.1526 2.5831 40 1 11.6632 0.2115 3.0674 41 1 10.5664 -0.5375 4.2523 42 1 8.9217 2.7076 3.3043 43 1 9.5459 1.7719 4.6837 44 1 11.6588 2.1760 2.8539 45 1 14.3425 4.1532 2.9785 46 1 8.3152 -0.9468 3.3565 47 1 7.6125 0.6576 3.6990 48 1 1.6683 -2.1188 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324797949.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:35 Heat of formation + Delta-G solvation = -19.647645 kcal Electronic energy + Delta-G solvation = -28635.629431 eV Core-core repulsion = 24691.468285 eV Total energy + Delta-G solvation = -3944.161147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.72150 -40.07841 -38.12840 -37.22383 -35.48144 -34.90398 -32.82989 -30.91035 -30.31317 -29.70709 -29.43963 -27.72062 -26.22178 -25.20913 -23.95969 -23.26277 -22.45360 -21.83310 -19.71990 -18.87240 -17.79790 -17.76301 -17.38106 -16.97560 -16.29864 -16.10698 -15.76699 -15.02909 -14.76342 -14.49038 -14.33546 -14.27120 -14.02447 -13.74328 -13.63447 -13.43666 -13.14593 -12.93504 -12.62986 -12.60023 -12.48426 -12.28170 -12.17997 -12.00141 -11.90071 -11.75900 -11.43627 -11.04808 -10.86843 -10.67000 -10.42837 -10.38935 -10.26764 -10.15423 -9.95259 -9.78860 -9.68039 -8.91928 -8.76766 -8.20270 -6.95618 -5.81063 -3.08949 0.57433 1.66007 2.18677 2.41517 2.88519 3.40340 3.45443 3.46797 3.48478 4.19350 4.22888 4.30257 4.43616 4.54523 4.64860 4.69997 4.78911 4.81614 4.94629 5.00866 5.06422 5.18249 5.22612 5.26321 5.35535 5.41185 5.47809 5.55721 5.68596 5.69448 5.78147 5.82557 5.89521 5.94797 6.03870 6.10999 6.17309 6.23980 6.27789 6.36919 6.45291 6.62728 6.73940 6.81164 6.82701 7.39566 7.67644 7.83260 7.96271 8.38307 9.50085 10.06914 10.42386 11.41881 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020827 B = 0.002276 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.078159 B =12298.619874 C =13052.891833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.016 3.984 3 C -0.230 4.230 4 C 0.146 3.854 5 N -0.482 5.482 6 C 0.075 3.925 7 C 0.519 3.481 8 O -0.532 6.532 9 N -0.613 5.613 10 C 0.094 3.906 11 C -0.118 4.118 12 C -0.079 4.079 13 C -0.133 4.133 14 C 0.167 3.833 15 N -0.728 5.728 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.118 3.882 25 C 0.522 3.478 26 O -0.553 6.553 27 C -0.249 4.249 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.162 0.838 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.019 0.981 43 H 0.021 0.979 44 H 0.385 0.615 45 H 0.254 0.746 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.003 -7.421 -11.296 24.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.012 3.988 3 C -0.253 4.253 4 C 0.019 3.981 5 N -0.192 5.192 6 C -0.050 4.050 7 C 0.306 3.694 8 O -0.408 6.408 9 N -0.348 5.348 10 C -0.029 4.029 11 C -0.156 4.156 12 C -0.080 4.080 13 C -0.191 4.191 14 C 0.040 3.960 15 N -0.373 5.373 16 C -0.369 4.369 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.005 4.005 25 C 0.325 3.675 26 O -0.436 6.436 27 C -0.271 4.271 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.163 0.837 32 H 0.179 0.821 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.039 0.961 44 H 0.219 0.781 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.116 -7.972 -10.707 24.982 hybrid contribution 0.661 0.903 0.365 1.177 sum -20.455 -7.069 -10.342 23.986 Atomic orbital electron populations 1.20926 0.90351 1.03615 1.03033 1.20210 0.96778 0.92668 0.89119 1.20526 0.92313 0.98960 1.13523 1.21929 0.93667 0.89518 0.92942 1.45053 1.07180 1.07352 1.59621 1.21768 0.79610 1.07298 0.96357 1.20197 0.81117 0.77049 0.91035 1.90754 1.54236 1.49907 1.45917 1.48743 1.04259 1.72271 1.09494 1.22747 0.87577 1.00656 0.91874 1.22776 0.98994 0.99590 0.94228 1.21652 0.93369 0.97029 0.95987 1.21820 0.98995 0.97415 1.00855 1.20695 0.89466 0.90181 0.95704 1.42361 1.11313 1.27285 1.56386 1.19269 0.97614 0.99221 1.20761 0.91233 1.24717 0.96610 0.99302 1.00355 1.69658 1.06628 1.40625 1.41325 0.86128 0.77999 0.83312 0.78825 1.20601 1.21878 1.21908 1.22175 0.92856 1.00878 0.84557 1.17088 0.89371 0.82399 0.78646 1.90951 1.69161 1.30289 1.53175 1.21898 0.92200 0.99560 1.13418 0.90114 0.90822 0.90718 0.83657 0.82063 0.86007 0.85275 0.90513 0.90403 0.90027 0.89471 0.93363 0.90741 0.92612 0.96295 0.96145 0.78057 0.93585 0.91389 0.90318 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.03 36.01 0.36 -0.28 16 2 C 0.02 0.13 5.89 -104.55 -0.62 -0.48 16 3 C -0.23 -1.73 9.71 -39.88 -0.39 -2.11 16 4 C 0.15 1.22 10.28 -16.84 -0.17 1.05 16 5 N -0.48 -5.41 2.07 -121.06 -0.25 -5.66 16 6 C 0.08 0.76 4.75 -5.19 -0.02 0.73 16 7 C 0.52 7.24 7.96 -10.98 -0.09 7.15 16 8 O -0.53 -9.59 16.77 5.56 0.09 -9.50 16 9 N -0.61 -7.98 3.29 -169.78 -0.56 -8.53 16 10 C 0.09 0.97 6.95 -2.13 -0.01 0.95 16 11 C -0.12 -1.55 5.73 -24.86 -0.14 -1.70 16 12 C -0.08 -1.19 0.67 -153.15 -0.10 -1.29 16 13 C -0.13 -1.95 8.05 37.15 0.30 -1.65 16 14 C 0.17 3.24 4.85 -4.04 -0.02 3.22 16 15 N -0.73 -17.43 5.12 -59.91 -0.31 -17.74 16 16 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 20 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 C 0.12 1.69 6.28 -2.99 -0.02 1.67 16 25 C 0.52 7.25 7.40 -15.45 -0.11 7.13 16 26 O -0.55 -9.63 16.64 4.86 0.08 -9.55 16 27 C -0.25 -2.77 9.65 -39.38 -0.38 -3.15 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 31 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.16 0.85 8.04 -52.48 -0.42 0.43 16 33 H 0.12 0.74 7.78 -51.93 -0.40 0.34 16 34 H 0.13 1.28 7.38 -51.93 -0.38 0.90 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.58 7.23 -51.93 -0.38 0.21 16 37 H 0.08 1.20 7.84 -51.93 -0.41 0.79 16 38 H 0.09 1.15 7.85 -51.93 -0.41 0.74 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.26 6.75 -51.93 -0.35 0.91 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.02 0.39 8.11 -51.93 -0.42 -0.04 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.38 9.49 6.18 -40.82 -0.25 9.24 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.07 0.94 7.68 -51.93 -0.40 0.54 16 47 H 0.08 1.24 7.60 -51.93 -0.39 0.84 16 48 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -36.56 393.10 -8.55 -45.11 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.56 Total: 5.37 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -1.67 Total: 4.14 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.39 Total: -58.53 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.17 Total: -19.05 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.56 -8.55 -45.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324797949.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.461 kcal (2) G-P(sol) polarization free energy of solvation -36.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds