Wall clock time and date at job start Tue Mar 31 2020 18:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40193 * 120.37024 * 2 1 4 4 C 1.35355 * 119.94987 * 179.97438 * 3 2 1 5 5 N 1.35761 * 120.69864 * 359.97438 * 4 3 2 6 6 C 1.46506 * 119.62132 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47289 * 89.99478 * 6 5 4 8 8 O 1.21279 * 119.99926 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99773 * 179.97438 * 7 6 5 10 10 C 1.48113 * 127.03634 * 359.68826 * 9 7 6 11 11 C 1.54597 * 103.42369 * 219.28325 * 10 9 7 12 12 C 1.54617 * 102.91194 * 322.86622 * 11 10 9 13 13 C 1.52990 * 110.32487 * 262.80819 * 12 11 10 14 14 C 1.53002 * 110.32602 * 140.58864 * 12 11 10 15 15 N 1.46499 * 109.47093 * 64.37844 * 14 12 11 16 16 C 1.36934 * 119.99969 * 179.97438 * 15 14 12 17 17 H 1.07995 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00012 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99796 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00015 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47065 * 60.00775 * 20 18 16 22 22 H 1.48504 * 109.46895 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47226 * 300.00192 * 20 18 16 24 24 C 1.47487 * 127.03174 * 179.97438 * 9 7 6 25 25 C 1.34656 * 120.75504 * 0.28795 * 5 4 3 26 26 O 1.22058 * 119.99005 * 179.70859 * 25 5 4 27 27 C 1.36402 * 120.36472 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.46894 * 89.99904 * 1 2 3 29 29 H 1.08995 * 109.47509 * 210.00296 * 1 2 3 30 30 H 1.08996 * 109.46864 * 330.00030 * 1 2 3 31 31 H 1.07999 * 120.02446 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.64828 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47060 * 209.99929 * 6 5 4 34 34 H 1.09004 * 109.47073 * 329.99417 * 6 5 4 35 35 H 1.09007 * 110.66088 * 337.76905 * 10 9 7 36 36 H 1.09001 * 110.66630 * 100.88087 * 10 9 7 37 37 H 1.08998 * 110.83039 * 204.44071 * 11 10 9 38 38 H 1.09000 * 110.72786 * 81.24063 * 11 10 9 39 39 H 1.09004 * 109.47067 * 175.61883 * 13 12 11 40 40 H 1.09000 * 109.47128 * 295.61388 * 13 12 11 41 41 H 1.08995 * 109.47591 * 55.62142 * 13 12 11 42 42 H 1.08994 * 109.47059 * 184.37904 * 14 12 11 43 43 H 1.09001 * 109.47127 * 304.38314 * 14 12 11 44 44 H 0.96997 * 119.99654 * 0.02562 * 15 14 12 45 45 H 0.97003 * 119.99882 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.91335 * 273.87885 * 24 9 7 47 47 H 1.08998 * 109.90858 * 35.16368 * 24 9 7 48 48 H 1.08003 * 120.34903 * 0.03886 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5693 1.1996 0.0005 5 7 4.2538 0.0272 0.0016 6 6 5.7188 0.0440 0.0027 7 6 6.2200 0.0505 1.4239 8 8 5.4313 0.0415 2.3451 9 7 7.5448 0.0653 1.6711 10 6 8.6387 0.0703 0.6725 11 6 9.6980 -0.8675 1.2958 12 6 9.6002 -0.5445 2.8047 13 6 10.6829 0.4598 3.2044 14 6 9.7300 -1.8251 3.6318 15 7 11.0652 -2.3967 3.4406 16 6 11.4140 -3.5528 4.0864 17 1 10.7046 -4.0433 4.7363 18 6 12.6794 -4.0941 3.9056 19 7 13.5441 -3.4959 3.1138 20 14 13.1554 -5.6707 4.7870 21 1 12.2363 -6.7632 4.3784 22 1 14.5491 -6.0370 4.4281 23 1 13.0592 -5.4658 6.2546 24 6 8.2020 0.0740 2.9914 25 6 3.6017 -1.1509 -0.0037 26 8 4.2311 -2.1966 -0.0080 27 6 2.1965 -1.1769 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6822 2.1486 -0.0004 32 1 4.1104 2.1343 0.0001 33 1 6.0927 -0.8420 -0.5104 34 1 6.0723 0.9379 -0.5114 35 1 8.2901 -0.3249 -0.2818 36 1 9.0425 1.0752 0.5492 37 1 10.6927 -0.6359 0.9151 38 1 9.4476 -1.9115 1.1075 39 1 10.5533 0.7367 4.2507 40 1 11.6656 0.0086 3.0671 41 1 10.6012 1.3498 2.5804 42 1 9.5817 -1.5930 4.6864 43 1 8.9773 -2.5442 3.3087 44 1 11.7025 -1.9558 2.8572 45 1 14.4285 -3.8740 2.9878 46 1 8.2942 1.0980 3.3535 47 1 7.6239 -0.5218 3.6977 48 1 1.6682 -2.1189 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324797950.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:38 Heat of formation + Delta-G solvation = -18.519079 kcal Electronic energy + Delta-G solvation = -28687.869148 eV Core-core repulsion = 24743.756940 eV Total energy + Delta-G solvation = -3944.112209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70800 -40.07151 -38.11951 -37.20250 -35.47223 -34.87516 -32.79974 -30.90112 -30.28764 -29.69689 -29.43836 -27.71403 -26.19965 -25.18311 -23.95556 -23.23909 -22.41384 -21.81883 -19.71589 -18.85605 -17.78508 -17.76140 -17.35915 -16.94626 -16.26215 -16.12264 -15.75882 -15.03055 -14.70976 -14.49428 -14.32186 -14.24791 -14.00099 -13.73450 -13.61180 -13.40210 -13.12386 -12.92052 -12.65154 -12.57429 -12.47019 -12.27648 -12.14773 -11.98967 -11.89905 -11.75468 -11.39501 -11.01264 -10.79186 -10.64306 -10.42342 -10.35749 -10.27244 -10.11870 -9.94288 -9.77307 -9.63554 -8.85938 -8.76871 -8.18700 -6.90691 -5.76002 -3.03711 0.58080 1.67018 2.19258 2.41033 2.89551 3.46182 3.47193 3.50164 3.51605 4.18331 4.20232 4.30288 4.44274 4.58923 4.66579 4.70232 4.80160 4.83546 4.94268 5.01695 5.09638 5.18734 5.23179 5.25580 5.35813 5.42953 5.48975 5.59729 5.68238 5.70313 5.78907 5.84382 5.88384 5.95656 6.07158 6.11412 6.20359 6.25286 6.28961 6.39311 6.49882 6.66760 6.77576 6.83982 6.85984 7.39880 7.72156 7.86722 7.96843 8.43527 9.55094 10.11727 10.47437 11.46895 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.002330 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.375795 B =12014.965705 C =12754.577148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.013 3.987 3 C -0.230 4.230 4 C 0.145 3.855 5 N -0.482 5.482 6 C 0.075 3.925 7 C 0.519 3.481 8 O -0.532 6.532 9 N -0.614 5.614 10 C 0.094 3.906 11 C -0.120 4.120 12 C -0.079 4.079 13 C -0.132 4.132 14 C 0.166 3.834 15 N -0.728 5.728 16 C -0.238 4.238 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.935 5.935 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.118 3.882 25 C 0.521 3.479 26 O -0.546 6.546 27 C -0.246 4.246 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.160 0.840 33 H 0.131 0.869 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.021 0.979 43 H 0.020 0.980 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.205 16.884 -11.339 29.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.253 4.253 4 C 0.018 3.982 5 N -0.193 5.193 6 C -0.050 4.050 7 C 0.306 3.694 8 O -0.408 6.408 9 N -0.348 5.348 10 C -0.028 4.028 11 C -0.158 4.158 12 C -0.080 4.080 13 C -0.190 4.190 14 C 0.038 3.962 15 N -0.373 5.373 16 C -0.369 4.369 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.584 5.584 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.004 4.004 25 C 0.323 3.677 26 O -0.428 6.428 27 C -0.267 4.267 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.162 0.838 32 H 0.177 0.823 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.096 0.904 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -21.297 16.036 -10.758 28.748 hybrid contribution 0.647 -0.682 0.369 1.010 sum -20.650 15.355 -10.389 27.751 Atomic orbital electron populations 1.20920 0.90370 1.03590 1.03007 1.20196 0.96758 0.92659 0.89421 1.20500 0.92302 0.98896 1.13652 1.21866 0.93619 0.89440 0.93293 1.45064 1.07140 1.07345 1.59768 1.21764 0.79646 1.07279 0.96330 1.20204 0.81125 0.77037 0.91044 1.90753 1.54243 1.49883 1.45918 1.48759 1.04261 1.72276 1.09492 1.22674 0.87556 1.00527 0.92074 1.22724 0.98720 1.00134 0.94188 1.21660 0.93231 0.97115 0.96020 1.21811 0.99265 0.97131 1.00760 1.20706 0.89344 0.90478 0.95643 1.42330 1.10486 1.28186 1.56281 1.19189 0.97064 0.99909 1.20721 0.91333 1.24708 0.96580 0.99310 1.00356 1.69640 1.06493 1.40912 1.41340 0.86265 0.77270 0.83423 0.79231 1.21297 1.21716 1.21306 1.22193 0.92847 1.00797 0.84613 1.17118 0.89395 0.82453 0.78748 1.90991 1.69071 1.30188 1.52555 1.21933 0.92209 0.99613 1.12974 0.90146 0.90800 0.90788 0.83763 0.82268 0.85143 0.86180 0.90355 0.90549 0.89463 0.89949 0.92640 0.90738 0.93442 0.96157 0.96172 0.78082 0.93527 0.91343 0.90350 0.83523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.03 36.01 0.36 -0.28 16 2 C 0.01 0.11 5.89 -104.55 -0.62 -0.50 16 3 C -0.23 -1.64 9.71 -39.88 -0.39 -2.03 16 4 C 0.14 1.13 10.28 -16.84 -0.17 0.95 16 5 N -0.48 -5.42 2.07 -121.05 -0.25 -5.67 16 6 C 0.08 0.76 4.75 -5.19 -0.02 0.73 16 7 C 0.52 7.24 7.96 -10.98 -0.09 7.15 16 8 O -0.53 -9.59 16.77 5.56 0.09 -9.49 16 9 N -0.61 -7.98 3.29 -169.96 -0.56 -8.54 16 10 C 0.09 0.97 6.93 -2.32 -0.02 0.96 16 11 C -0.12 -1.67 5.72 -25.04 -0.14 -1.82 16 12 C -0.08 -1.22 0.67 -153.13 -0.10 -1.32 16 13 C -0.13 -1.91 8.05 37.15 0.30 -1.61 16 14 C 0.17 3.38 4.85 -4.04 -0.02 3.36 16 15 N -0.73 -18.05 5.12 -59.91 -0.31 -18.36 16 16 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 20 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.12 1.69 6.29 -2.97 -0.02 1.67 16 25 C 0.52 7.50 7.40 -15.44 -0.11 7.39 16 26 O -0.55 -10.13 16.64 4.87 0.08 -10.05 16 27 C -0.25 -2.83 9.65 -39.38 -0.38 -3.21 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 31 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 32 H 0.16 0.66 8.04 -52.48 -0.42 0.24 16 33 H 0.13 1.39 7.13 -51.93 -0.37 1.02 16 34 H 0.12 0.64 8.01 -51.93 -0.42 0.22 16 35 H 0.08 0.64 7.23 -51.93 -0.38 0.27 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.19 7.85 -51.93 -0.41 0.78 16 38 H 0.08 1.36 7.84 -51.93 -0.41 0.95 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.26 6.75 -51.93 -0.35 0.91 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.02 0.45 8.11 -51.93 -0.42 0.02 16 44 H 0.38 9.74 6.18 -40.82 -0.25 9.49 16 45 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.07 0.87 7.68 -51.93 -0.40 0.48 16 47 H 0.08 1.28 7.59 -51.93 -0.39 0.89 16 48 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -37.75 393.06 -8.55 -46.30 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.56 Total: 5.31 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.67 Total: 4.11 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.39 Total: -59.77 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.17 Total: -19.55 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.75 -8.55 -46.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324797950.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.776 kcal (2) G-P(sol) polarization free energy of solvation -37.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds