Wall clock time and date at job start Tue Mar 31 2020 18:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40193 * 120.37024 * 2 1 4 4 C 1.35355 * 119.94987 * 179.97438 * 3 2 1 5 5 N 1.35761 * 120.69864 * 359.97438 * 4 3 2 6 6 C 1.46506 * 119.62132 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47289 * 89.99478 * 6 5 4 8 8 O 1.21279 * 119.99926 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99773 * 179.97438 * 7 6 5 10 10 C 1.48113 * 127.03634 * 359.68826 * 9 7 6 11 11 C 1.54597 * 103.42369 * 219.28325 * 10 9 7 12 12 C 1.54617 * 102.91194 * 322.86622 * 11 10 9 13 13 C 1.52990 * 110.32487 * 262.80819 * 12 11 10 14 14 C 1.53002 * 110.32602 * 140.58864 * 12 11 10 15 15 N 1.46499 * 109.47093 * 64.37844 * 14 12 11 16 16 C 1.36934 * 119.99969 * 179.97438 * 15 14 12 17 17 H 1.07995 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00012 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99796 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00015 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47065 * 60.00775 * 20 18 16 22 22 H 1.48504 * 109.46895 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47226 * 300.00192 * 20 18 16 24 24 C 1.47487 * 127.03174 * 179.97438 * 9 7 6 25 25 C 1.34656 * 120.75504 * 0.28795 * 5 4 3 26 26 O 1.22058 * 119.99005 * 179.70859 * 25 5 4 27 27 C 1.36402 * 120.36472 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.46894 * 89.99904 * 1 2 3 29 29 H 1.08995 * 109.47509 * 210.00296 * 1 2 3 30 30 H 1.08996 * 109.46864 * 330.00030 * 1 2 3 31 31 H 1.07999 * 120.02446 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.64828 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47060 * 209.99929 * 6 5 4 34 34 H 1.09004 * 109.47073 * 329.99417 * 6 5 4 35 35 H 1.09007 * 110.66088 * 337.76905 * 10 9 7 36 36 H 1.09001 * 110.66630 * 100.88087 * 10 9 7 37 37 H 1.08998 * 110.83039 * 204.44071 * 11 10 9 38 38 H 1.09000 * 110.72786 * 81.24063 * 11 10 9 39 39 H 1.09004 * 109.47067 * 175.61883 * 13 12 11 40 40 H 1.09000 * 109.47128 * 295.61388 * 13 12 11 41 41 H 1.08995 * 109.47591 * 55.62142 * 13 12 11 42 42 H 1.08994 * 109.47059 * 184.37904 * 14 12 11 43 43 H 1.09001 * 109.47127 * 304.38314 * 14 12 11 44 44 H 0.96997 * 119.99654 * 0.02562 * 15 14 12 45 45 H 0.97003 * 119.99882 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.91335 * 273.87885 * 24 9 7 47 47 H 1.08998 * 109.90858 * 35.16368 * 24 9 7 48 48 H 1.08003 * 120.34903 * 0.03886 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5693 1.1996 0.0005 5 7 4.2538 0.0272 0.0016 6 6 5.7188 0.0440 0.0027 7 6 6.2200 0.0505 1.4239 8 8 5.4313 0.0415 2.3451 9 7 7.5448 0.0653 1.6711 10 6 8.6387 0.0703 0.6725 11 6 9.6980 -0.8675 1.2958 12 6 9.6002 -0.5445 2.8047 13 6 10.6829 0.4598 3.2044 14 6 9.7300 -1.8251 3.6318 15 7 11.0652 -2.3967 3.4406 16 6 11.4140 -3.5528 4.0864 17 1 10.7046 -4.0433 4.7363 18 6 12.6794 -4.0941 3.9056 19 7 13.5441 -3.4959 3.1138 20 14 13.1554 -5.6707 4.7870 21 1 12.2363 -6.7632 4.3784 22 1 14.5491 -6.0370 4.4281 23 1 13.0592 -5.4658 6.2546 24 6 8.2020 0.0740 2.9914 25 6 3.6017 -1.1509 -0.0037 26 8 4.2311 -2.1966 -0.0080 27 6 2.1965 -1.1769 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6822 2.1486 -0.0004 32 1 4.1104 2.1343 0.0001 33 1 6.0927 -0.8420 -0.5104 34 1 6.0723 0.9379 -0.5114 35 1 8.2901 -0.3249 -0.2818 36 1 9.0425 1.0752 0.5492 37 1 10.6927 -0.6359 0.9151 38 1 9.4476 -1.9115 1.1075 39 1 10.5533 0.7367 4.2507 40 1 11.6656 0.0086 3.0671 41 1 10.6012 1.3498 2.5804 42 1 9.5817 -1.5930 4.6864 43 1 8.9773 -2.5442 3.3087 44 1 11.7025 -1.9558 2.8572 45 1 14.4285 -3.8740 2.9878 46 1 8.2942 1.0980 3.3535 47 1 7.6239 -0.5218 3.6977 48 1 1.6682 -2.1189 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324797950.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:37 Heat of formation + Delta-G solvation = -44.383053 kcal Electronic energy + Delta-G solvation = -28688.990695 eV Core-core repulsion = 24743.756940 eV Total energy + Delta-G solvation = -3945.233755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.55904 -41.16827 -39.32950 -38.13260 -36.55532 -36.23888 -34.45472 -32.31047 -31.39922 -30.61376 -30.48563 -28.55716 -27.65936 -26.59670 -24.67206 -24.60522 -24.00484 -22.61274 -20.71653 -20.18444 -19.22736 -18.65462 -18.54850 -18.13698 -17.24830 -17.03874 -16.77335 -16.54290 -15.99963 -15.82255 -15.44212 -15.18312 -15.15421 -14.95334 -14.94355 -14.41097 -14.19569 -14.17203 -13.67955 -13.55596 -13.35677 -13.31198 -13.09387 -13.05099 -12.92574 -12.86642 -12.79629 -12.60436 -12.47178 -12.22612 -12.12733 -11.67365 -11.53753 -11.44214 -11.30637 -11.12365 -10.96821 -10.60563 -9.84045 -9.01962 -9.00321 -7.98221 -5.25798 -0.13276 0.90659 1.33255 1.42340 1.44146 1.46648 1.52843 1.96312 2.52887 2.64780 3.24044 3.34459 3.57633 3.61573 3.63345 3.72603 3.78419 3.86485 4.04313 4.12936 4.19030 4.25376 4.31098 4.33182 4.38458 4.39457 4.60147 4.68291 4.75048 4.78044 4.83246 4.84583 4.87535 4.90037 4.97444 5.07818 5.09927 5.17553 5.23417 5.24955 5.37917 5.45262 5.48290 5.52328 5.66239 6.04058 6.24699 6.38356 6.88737 6.97354 7.32253 8.05651 8.34279 9.24426 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.002330 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.375795 B =12014.965705 C =12754.577148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.035 3.965 3 C -0.229 4.229 4 C 0.140 3.860 5 N -0.484 5.484 6 C 0.079 3.921 7 C 0.514 3.486 8 O -0.582 6.582 9 N -0.614 5.614 10 C 0.103 3.897 11 C -0.122 4.122 12 C -0.072 4.072 13 C -0.124 4.124 14 C 0.166 3.834 15 N -0.732 5.732 16 C -0.252 4.252 17 H 0.064 0.936 18 C -0.068 4.068 19 N -0.962 5.962 20 Si 0.970 3.030 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.124 3.876 25 C 0.500 3.500 26 O -0.615 6.615 27 C -0.295 4.295 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.186 0.814 32 H 0.207 0.793 33 H 0.121 0.879 34 H 0.182 0.818 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.087 0.913 42 H 0.013 0.987 43 H -0.003 1.003 44 H 0.381 0.619 45 H 0.253 0.747 46 H 0.094 0.906 47 H 0.046 0.954 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.258 20.655 -12.687 32.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.031 3.969 3 C -0.251 4.251 4 C 0.015 3.985 5 N -0.193 5.193 6 C -0.046 4.046 7 C 0.303 3.697 8 O -0.462 6.462 9 N -0.347 5.347 10 C -0.018 4.018 11 C -0.160 4.160 12 C -0.073 4.073 13 C -0.181 4.181 14 C 0.039 3.961 15 N -0.376 5.376 16 C -0.384 4.384 17 H 0.082 0.918 18 C -0.261 4.261 19 N -0.612 5.612 20 Si 0.799 3.201 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.000 4.000 25 C 0.305 3.695 26 O -0.503 6.503 27 C -0.316 4.316 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.203 0.797 32 H 0.224 0.776 33 H 0.139 0.861 34 H 0.199 0.801 35 H 0.123 0.877 36 H 0.136 0.864 37 H 0.112 0.888 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.031 0.969 43 H 0.015 0.985 44 H 0.215 0.785 45 H 0.062 0.938 46 H 0.113 0.887 47 H 0.065 0.935 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.372 19.862 -12.120 32.278 hybrid contribution 0.874 -1.772 0.822 2.140 sum -21.498 18.090 -11.297 30.283 Atomic orbital electron populations 1.21043 0.87922 1.04544 1.04410 1.20662 0.98563 0.92069 0.85639 1.21087 0.92411 0.99765 1.11876 1.22758 0.94453 0.89597 0.91702 1.45102 1.07816 1.07599 1.58793 1.21976 0.79148 1.09685 0.93806 1.20914 0.80827 0.75816 0.92182 1.90725 1.55493 1.52226 1.47774 1.48842 1.04724 1.71581 1.09518 1.22870 0.85275 1.01742 0.91873 1.22678 1.00594 0.99275 0.93472 1.21525 0.94689 0.94866 0.96186 1.21733 0.96887 0.97861 1.01617 1.20778 0.86632 0.92507 0.96229 1.42412 1.11881 1.27551 1.55796 1.19511 0.97209 1.00987 1.20651 0.91802 1.25465 0.96640 1.02446 1.01505 1.69771 1.06595 1.42229 1.42586 0.85275 0.76746 0.79754 0.78347 1.21011 1.21511 1.20536 1.22038 0.91405 1.01383 0.85158 1.17577 0.90415 0.82719 0.78763 1.90928 1.70320 1.32483 1.56603 1.21880 0.91452 1.00900 1.17411 0.88268 0.91155 0.88533 0.79653 0.77630 0.86100 0.80105 0.87727 0.86381 0.88785 0.93489 0.92755 0.93558 0.89400 0.96879 0.98535 0.78469 0.93802 0.88748 0.93511 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 10.03 71.24 0.71 -0.27 16 2 C 0.03 0.53 5.89 -19.82 -0.12 0.41 16 3 C -0.23 -2.39 9.71 22.08 0.21 -2.18 16 4 C 0.14 1.68 10.28 83.42 0.86 2.53 16 5 N -0.48 -10.28 2.07 -655.03 -1.36 -11.64 16 6 C 0.08 1.42 4.75 85.63 0.41 1.83 16 7 C 0.51 13.76 7.96 87.66 0.70 14.46 16 8 O -0.58 -21.20 16.77 -3.03 -0.05 -21.25 16 9 N -0.61 -14.91 3.29 -810.04 -2.67 -17.57 16 10 C 0.10 1.80 6.93 86.61 0.60 2.40 16 11 C -0.12 -3.33 5.72 31.69 0.18 -3.15 16 12 C -0.07 -2.20 0.67 -51.29 -0.03 -2.23 16 13 C -0.12 -3.39 8.05 71.98 0.58 -2.81 16 14 C 0.17 7.09 4.85 86.38 0.42 7.51 16 15 N -0.73 -37.71 5.12 -343.46 -1.76 -39.46 16 16 C -0.25 -14.60 9.99 84.03 0.84 -13.76 16 17 H 0.06 3.68 7.83 -2.91 -0.02 3.65 16 18 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 19 N -0.96 -58.36 13.06 21.65 0.28 -58.08 16 20 Si 0.97 47.36 29.55 68.60 2.03 49.39 16 21 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 24 C 0.12 3.44 6.29 86.54 0.54 3.99 16 25 C 0.50 15.18 7.40 84.82 0.63 15.81 16 26 O -0.62 -24.96 16.64 -5.51 -0.09 -25.05 16 27 C -0.29 -7.18 9.65 22.40 0.22 -6.96 16 28 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 30 H 0.10 0.38 8.10 -2.39 -0.02 0.37 16 31 H 0.19 0.42 8.06 -2.91 -0.02 0.40 16 32 H 0.21 0.44 8.04 -2.91 -0.02 0.42 16 33 H 0.12 2.51 7.13 -2.39 -0.02 2.49 16 34 H 0.18 0.93 8.01 -2.38 -0.02 0.91 16 35 H 0.10 1.33 7.23 -2.38 -0.02 1.32 16 36 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 2.44 7.85 -2.39 -0.02 2.43 16 38 H 0.05 1.61 7.84 -2.39 -0.02 1.59 16 39 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.05 1.55 6.75 -2.39 -0.02 1.53 16 41 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.00 -0.15 8.11 -2.39 -0.02 -0.17 16 44 H 0.38 19.95 6.18 -92.71 -0.57 19.38 16 45 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 46 H 0.09 2.17 7.68 -2.39 -0.02 2.16 16 47 H 0.05 1.60 7.59 -2.39 -0.02 1.58 16 48 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -90.75 393.06 3.98 -86.77 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.39 Total: 22.81 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 7.21 Total: 14.09 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -5.50 Total: -126.75 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -0.14 Total: -46.30 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -90.75 3.98 -86.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324797950.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.385 kcal (2) G-P(sol) polarization free energy of solvation -90.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds