Wall clock time and date at job start Tue Mar 31 2020 17:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.46170 * 2 1 4 4 N 1.46507 * 109.47067 * 60.02832 * 3 2 1 5 5 C 1.34774 * 120.00093 * 179.97438 * 4 3 2 6 6 O 1.21611 * 119.99904 * 0.02562 * 5 4 3 7 7 C 1.47423 * 119.99961 * 179.97438 * 5 4 3 8 8 C 1.36090 * 126.44447 * 180.02562 * 7 5 4 9 9 O 1.34264 * 106.94346 * 180.02562 * 8 7 5 10 10 C 1.34047 * 108.22803 * 0.02562 * 9 8 7 11 11 C 1.50703 * 125.37666 * 179.97438 * 10 9 8 12 12 C 1.52993 * 117.49881 * 8.72170 * 11 10 9 13 13 C 1.53000 * 117.50080 * 300.05859 * 11 10 9 14 14 N 1.29940 * 109.24634 * 359.97438 * 10 9 8 15 15 C 1.53043 * 109.44924 * 119.96978 * 2 1 3 16 16 C 1.53195 * 109.31286 * 58.64665 * 15 2 1 17 17 N 1.46924 * 108.77696 * 54.63528 * 16 15 2 18 18 C 1.36933 * 120.63307 * 126.40804 * 17 16 15 19 19 H 1.08002 * 119.99874 * 332.61428 * 18 17 16 20 20 C 1.38812 * 119.99989 * 152.60808 * 18 17 16 21 21 N 1.31622 * 119.99778 * 159.34882 * 20 18 17 22 22 Si 1.86801 * 120.00186 * 339.34683 * 20 18 17 23 23 H 1.48498 * 109.46917 * 92.93989 * 22 20 18 24 24 H 1.48496 * 109.47097 * 212.94007 * 22 20 18 25 25 H 1.48500 * 109.46902 * 332.94236 * 22 20 18 26 26 C 1.46925 * 118.73840 * 306.39488 * 17 16 15 27 27 C 1.53043 * 109.45744 * 240.02773 * 2 1 3 28 28 H 1.08995 * 109.47619 * 59.99836 * 1 2 3 29 29 H 1.09004 * 109.47097 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47097 * 299.99649 * 1 2 3 31 31 H 1.09003 * 109.47438 * 300.03422 * 3 2 1 32 32 H 1.09000 * 109.47449 * 180.02562 * 3 2 1 33 33 H 0.97004 * 119.99714 * 0.02562 * 4 3 2 34 34 H 1.07993 * 126.53213 * 0.02562 * 8 7 5 35 35 H 1.09004 * 115.54686 * 154.39185 * 11 10 9 36 36 H 1.09003 * 117.49915 * 359.97438 * 12 11 10 37 37 H 1.09006 * 117.50174 * 145.01705 * 12 11 10 38 38 H 1.08995 * 117.49942 * 214.98379 * 13 11 10 39 39 H 1.08999 * 117.49623 * 359.97438 * 13 11 10 40 40 H 1.09001 * 109.49305 * 178.59745 * 15 2 1 41 41 H 1.09000 * 109.49521 * 298.69437 * 15 2 1 42 42 H 1.08997 * 109.58707 * 294.84842 * 16 15 2 43 43 H 1.09001 * 109.58554 * 174.42063 * 16 15 2 44 44 H 0.97003 * 120.00053 * 180.02562 * 21 20 18 45 45 H 1.09004 * 109.58427 * 293.81480 * 26 17 16 46 46 H 1.09001 * 109.70278 * 173.46587 * 26 17 16 47 47 H 1.09001 * 109.49670 * 61.31313 * 27 2 1 48 48 H 1.08999 * 109.50044 * 181.40642 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4425 0.0000 4 7 1.5518 2.1329 1.1966 5 6 1.8777 3.4230 1.4102 6 8 2.5764 4.0143 0.6095 7 6 1.3862 4.1178 2.6140 8 6 1.6327 5.4112 2.9581 9 8 1.0000 5.6340 4.1212 10 6 0.3791 4.5028 4.4841 11 6 -0.4468 4.3226 5.7318 12 6 -0.7620 5.5717 6.5569 13 6 0.2474 4.5451 7.0769 14 7 0.6017 3.5863 3.5904 15 6 2.0396 -0.7209 1.2501 16 6 1.4990 -2.1542 1.2642 17 7 1.8619 -2.8090 0.0000 18 6 2.5253 -4.0069 0.0001 19 1 3.1631 -4.2710 0.8307 20 6 2.3779 -4.8819 -1.0674 21 7 3.2824 -5.8131 -1.2848 22 14 0.8959 -4.7380 -2.1954 23 1 1.2375 -3.8737 -3.3537 24 1 0.5106 -6.0873 -2.6812 25 1 -0.2386 -4.1383 -1.4480 26 6 1.4992 -2.1542 -1.2642 27 6 2.0398 -0.7209 -1.2501 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6758 1.9565 -0.8897 32 1 3.1297 1.4428 -0.0005 33 1 0.9948 1.6611 1.8354 34 1 2.2244 6.1229 2.4017 35 1 -1.2105 3.5464 5.6819 36 1 -0.3716 6.5240 6.1977 37 1 -1.7329 5.6173 7.0503 38 1 -0.0597 3.9157 7.9120 39 1 1.3017 4.8215 7.0594 40 1 3.1293 -0.7431 1.2384 41 1 1.6955 -0.1935 2.1398 42 1 0.4140 -2.1345 1.3672 43 1 1.9374 -2.7019 2.0984 44 1 3.1796 -6.4243 -2.0310 45 1 0.4143 -2.1346 -1.3675 46 1 1.9359 -2.7012 -2.0999 47 1 1.6959 -0.1935 -2.1398 48 1 3.1295 -0.7432 -1.2382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324891909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:13 Heat of formation + Delta-G solvation = 34.751053 kcal Electronic energy + Delta-G solvation = -28774.232161 eV Core-core repulsion = 24832.429919 eV Total energy + Delta-G solvation = -3941.802242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.80746 -39.96457 -38.63438 -37.72399 -35.30912 -35.17240 -33.09135 -31.30530 -30.64415 -30.37555 -27.44125 -27.06137 -24.74134 -24.52666 -23.52981 -23.00765 -22.66465 -21.44029 -20.91958 -20.29117 -18.52384 -18.07578 -17.26959 -17.03030 -16.46080 -16.22905 -15.91671 -15.42438 -15.23769 -15.05617 -14.31010 -14.24284 -13.99237 -13.88673 -13.74418 -13.41965 -13.09824 -12.96162 -12.47905 -12.17391 -12.16766 -12.00943 -11.95873 -11.71236 -11.51048 -11.23513 -11.19591 -11.15161 -10.86446 -10.75165 -10.62141 -10.44659 -10.37003 -10.02939 -9.78694 -9.63314 -9.38573 -9.31724 -9.01546 -8.58754 -6.92887 -5.92566 -3.27667 0.76848 1.61018 2.12667 2.96043 3.07100 3.22726 3.33519 3.44243 3.49663 3.52296 4.13259 4.27905 4.36893 4.48748 4.54985 4.67573 4.90866 4.97109 5.02863 5.03428 5.08740 5.12273 5.24849 5.29503 5.42233 5.44745 5.48711 5.60191 5.65042 5.71697 5.81216 5.91273 5.96132 5.97290 6.10150 6.21656 6.28923 6.34566 6.43184 6.46612 6.55193 6.69919 6.71303 6.74054 7.01108 7.08468 7.47509 7.99425 8.05120 8.35549 8.97335 9.75009 10.13437 11.23576 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.002429 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.055297 B =11522.725766 C =12217.777593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 C 0.128 3.872 4 N -0.702 5.702 5 C 0.598 3.402 6 O -0.541 6.541 7 C -0.067 4.067 8 C 0.010 3.990 9 O -0.196 6.196 10 C 0.228 3.772 11 C -0.074 4.074 12 C -0.163 4.163 13 C -0.156 4.156 14 N -0.454 5.454 15 C -0.124 4.124 16 C 0.149 3.851 17 N -0.605 5.605 18 C -0.258 4.258 19 H 0.085 0.915 20 C 0.022 3.978 21 N -0.909 5.909 22 Si 0.883 3.117 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.271 1.271 26 C 0.127 3.873 27 C -0.121 4.121 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.410 0.590 34 H 0.232 0.768 35 H 0.149 0.851 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.025 0.975 43 H 0.061 0.939 44 H 0.262 0.738 45 H 0.027 0.973 46 H 0.072 0.928 47 H 0.056 0.944 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.429 24.747 13.899 29.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.065 4.065 3 C 0.005 3.995 4 N -0.354 5.354 5 C 0.383 3.617 6 O -0.419 6.419 7 C -0.187 4.187 8 C -0.064 4.064 9 O -0.083 6.083 10 C 0.020 3.980 11 C -0.093 4.093 12 C -0.200 4.200 13 C -0.194 4.194 14 N -0.184 5.184 15 C -0.163 4.163 16 C 0.023 3.977 17 N -0.329 5.329 18 C -0.386 4.386 19 H 0.102 0.898 20 C -0.177 4.177 21 N -0.553 5.553 22 Si 0.714 3.286 23 H -0.217 1.217 24 H -0.233 1.233 25 H -0.196 1.196 26 C 0.001 3.999 27 C -0.161 4.161 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.247 0.753 34 H 0.248 0.752 35 H 0.167 0.833 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.119 0.881 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.045 0.955 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.106 24.354 13.252 28.887 hybrid contribution -0.699 0.420 -0.633 1.032 sum -8.804 24.774 12.619 29.163 Atomic orbital electron populations 1.21976 0.94640 1.02824 1.00836 1.20694 0.95826 0.92253 0.97711 1.21615 0.99374 0.92031 0.86448 1.45916 1.52495 1.11074 1.25875 1.16728 0.79962 0.81940 0.83088 1.90826 1.38585 1.66634 1.45841 1.21867 1.04461 0.93808 0.98548 1.25286 0.97625 0.98238 0.85251 1.84344 1.51326 1.38577 1.34003 1.25100 0.96591 0.79041 0.97305 1.20303 1.00907 1.03722 0.84368 1.23144 1.01507 0.93605 1.01752 1.23169 0.99125 1.02321 0.94831 1.70734 1.15019 1.30640 1.01964 1.22074 1.01223 0.97832 0.95210 1.20940 0.96522 0.90855 0.89391 1.44331 1.67442 1.21696 0.99391 1.18924 1.20043 0.92222 1.07399 0.89786 1.25282 0.97947 0.96215 0.98244 1.69843 1.33443 1.21296 1.30672 0.86943 0.85547 0.75533 0.80609 1.21659 1.23273 1.19601 1.21343 0.96909 0.91383 0.90238 1.22012 1.01441 0.97538 0.95084 0.93005 0.91052 0.93280 0.91375 0.91108 0.75286 0.75184 0.83315 0.87784 0.87064 0.86901 0.88061 0.91683 0.92911 0.95730 0.92036 0.92827 0.95486 0.91016 0.92539 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 7.54 37.16 0.28 -1.76 16 2 C -0.06 -0.96 0.53 -154.47 -0.08 -1.04 16 3 C 0.13 1.79 4.56 -4.04 -0.02 1.77 16 4 N -0.70 -9.29 4.94 -61.38 -0.30 -9.59 16 5 C 0.60 8.38 7.81 -12.52 -0.10 8.28 16 6 O -0.54 -8.84 16.89 5.27 0.09 -8.75 16 7 C -0.07 -0.81 6.99 -83.02 -0.58 -1.39 16 8 C 0.01 0.09 11.95 29.96 0.36 0.45 16 9 O -0.20 -1.80 10.40 6.50 0.07 -1.73 16 10 C 0.23 2.17 7.80 -13.08 -0.10 2.07 16 11 C -0.07 -0.46 6.33 -91.77 -0.58 -1.04 16 12 C -0.16 -0.67 10.16 -26.70 -0.27 -0.94 16 13 C -0.16 -0.71 10.24 -26.69 -0.27 -0.98 16 14 N -0.45 -5.33 11.06 -7.65 -0.08 -5.41 16 15 C -0.12 -1.98 4.75 -26.61 -0.13 -2.11 16 16 C 0.15 2.86 6.05 -3.71 -0.02 2.84 16 17 N -0.60 -14.14 2.77 -172.32 -0.48 -14.62 16 18 C -0.26 -7.18 10.04 -15.06 -0.15 -7.33 16 19 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 20 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 21 N -0.91 -28.02 13.97 55.49 0.78 -27.24 16 22 Si 0.88 22.44 24.35 -169.99 -4.14 18.30 16 23 H -0.29 -7.09 6.62 56.52 0.37 -6.71 16 24 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 25 H -0.27 -6.72 6.63 56.52 0.38 -6.35 16 26 C 0.13 2.71 3.73 -3.71 -0.01 2.70 16 27 C -0.12 -2.10 4.91 -26.61 -0.13 -2.23 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.13 4.98 -51.93 -0.26 0.87 16 30 H 0.05 0.61 6.86 -51.93 -0.36 0.25 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.41 5.13 5.88 -40.82 -0.24 4.89 16 34 H 0.23 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.15 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.46 7.94 -51.93 -0.41 0.05 16 37 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.73 6.82 -51.93 -0.35 0.38 16 42 H 0.02 0.46 6.69 -51.93 -0.35 0.11 16 43 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.03 0.57 5.63 -51.93 -0.29 0.28 16 46 H 0.07 1.71 4.50 -51.93 -0.23 1.47 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 376.42 15.07 5.67 5.67 Total: -1.00 -33.47 376.42 -7.47 -40.95 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.17 Total: 2.60 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.90 Total: -0.18 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.09 Total: -56.86 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.16 Total: -10.48 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.14 Total: 18.30 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.47 -7.47 -40.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324891909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.698 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds