Wall clock time and date at job start Tue Mar 31 2020 17:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.46170 * 2 1 4 4 N 1.46507 * 109.47067 * 60.02832 * 3 2 1 5 5 C 1.34774 * 120.00093 * 179.97438 * 4 3 2 6 6 O 1.21611 * 119.99904 * 0.02562 * 5 4 3 7 7 C 1.47423 * 119.99961 * 179.97438 * 5 4 3 8 8 C 1.36090 * 126.44447 * 180.02562 * 7 5 4 9 9 O 1.34264 * 106.94346 * 180.02562 * 8 7 5 10 10 C 1.34047 * 108.22803 * 0.02562 * 9 8 7 11 11 C 1.50703 * 125.37666 * 179.97438 * 10 9 8 12 12 C 1.52993 * 117.49881 * 8.72170 * 11 10 9 13 13 C 1.53000 * 117.50080 * 300.05859 * 11 10 9 14 14 N 1.29940 * 109.24634 * 359.97438 * 10 9 8 15 15 C 1.53043 * 109.44924 * 119.96978 * 2 1 3 16 16 C 1.53195 * 109.31286 * 58.64665 * 15 2 1 17 17 N 1.46924 * 108.77696 * 54.63528 * 16 15 2 18 18 C 1.36933 * 120.63307 * 126.40804 * 17 16 15 19 19 H 1.08002 * 119.99874 * 332.61428 * 18 17 16 20 20 C 1.38812 * 119.99989 * 152.60808 * 18 17 16 21 21 N 1.31622 * 119.99778 * 159.34882 * 20 18 17 22 22 Si 1.86801 * 120.00186 * 339.34683 * 20 18 17 23 23 H 1.48498 * 109.46917 * 92.93989 * 22 20 18 24 24 H 1.48496 * 109.47097 * 212.94007 * 22 20 18 25 25 H 1.48500 * 109.46902 * 332.94236 * 22 20 18 26 26 C 1.46925 * 118.73840 * 306.39488 * 17 16 15 27 27 C 1.53043 * 109.45744 * 240.02773 * 2 1 3 28 28 H 1.08995 * 109.47619 * 59.99836 * 1 2 3 29 29 H 1.09004 * 109.47097 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47097 * 299.99649 * 1 2 3 31 31 H 1.09003 * 109.47438 * 300.03422 * 3 2 1 32 32 H 1.09000 * 109.47449 * 180.02562 * 3 2 1 33 33 H 0.97004 * 119.99714 * 0.02562 * 4 3 2 34 34 H 1.07993 * 126.53213 * 0.02562 * 8 7 5 35 35 H 1.09004 * 115.54686 * 154.39185 * 11 10 9 36 36 H 1.09003 * 117.49915 * 359.97438 * 12 11 10 37 37 H 1.09006 * 117.50174 * 145.01705 * 12 11 10 38 38 H 1.08995 * 117.49942 * 214.98379 * 13 11 10 39 39 H 1.08999 * 117.49623 * 359.97438 * 13 11 10 40 40 H 1.09001 * 109.49305 * 178.59745 * 15 2 1 41 41 H 1.09000 * 109.49521 * 298.69437 * 15 2 1 42 42 H 1.08997 * 109.58707 * 294.84842 * 16 15 2 43 43 H 1.09001 * 109.58554 * 174.42063 * 16 15 2 44 44 H 0.97003 * 120.00053 * 180.02562 * 21 20 18 45 45 H 1.09004 * 109.58427 * 293.81480 * 26 17 16 46 46 H 1.09001 * 109.70278 * 173.46587 * 26 17 16 47 47 H 1.09001 * 109.49670 * 61.31313 * 27 2 1 48 48 H 1.08999 * 109.50044 * 181.40642 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4425 0.0000 4 7 1.5518 2.1329 1.1966 5 6 1.8777 3.4230 1.4102 6 8 2.5764 4.0143 0.6095 7 6 1.3862 4.1178 2.6140 8 6 1.6327 5.4112 2.9581 9 8 1.0000 5.6340 4.1212 10 6 0.3791 4.5028 4.4841 11 6 -0.4468 4.3226 5.7318 12 6 -0.7620 5.5717 6.5569 13 6 0.2474 4.5451 7.0769 14 7 0.6017 3.5863 3.5904 15 6 2.0396 -0.7209 1.2501 16 6 1.4990 -2.1542 1.2642 17 7 1.8619 -2.8090 0.0000 18 6 2.5253 -4.0069 0.0001 19 1 3.1631 -4.2710 0.8307 20 6 2.3779 -4.8819 -1.0674 21 7 3.2824 -5.8131 -1.2848 22 14 0.8959 -4.7380 -2.1954 23 1 1.2375 -3.8737 -3.3537 24 1 0.5106 -6.0873 -2.6812 25 1 -0.2386 -4.1383 -1.4480 26 6 1.4992 -2.1542 -1.2642 27 6 2.0398 -0.7209 -1.2501 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6758 1.9565 -0.8897 32 1 3.1297 1.4428 -0.0005 33 1 0.9948 1.6611 1.8354 34 1 2.2244 6.1229 2.4017 35 1 -1.2105 3.5464 5.6819 36 1 -0.3716 6.5240 6.1977 37 1 -1.7329 5.6173 7.0503 38 1 -0.0597 3.9157 7.9120 39 1 1.3017 4.8215 7.0594 40 1 3.1293 -0.7431 1.2384 41 1 1.6955 -0.1935 2.1398 42 1 0.4140 -2.1345 1.3672 43 1 1.9374 -2.7019 2.0984 44 1 3.1796 -6.4243 -2.0310 45 1 0.4143 -2.1346 -1.3675 46 1 1.9359 -2.7012 -2.0999 47 1 1.6959 -0.1935 -2.1398 48 1 3.1295 -0.7432 -1.2382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324891909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:13 Heat of formation + Delta-G solvation = 10.385249 kcal Electronic energy + Delta-G solvation = -28775.288742 eV Core-core repulsion = 24832.429919 eV Total energy + Delta-G solvation = -3942.858823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.54558 -41.15302 -39.95114 -38.11534 -36.78555 -36.00175 -34.63860 -33.15726 -31.95064 -31.41031 -28.97514 -28.17199 -26.01450 -25.28985 -24.92377 -24.07809 -23.29547 -22.70170 -22.08084 -21.18319 -19.76225 -19.26413 -18.32860 -17.96655 -17.74949 -17.38305 -16.87532 -16.65314 -16.40539 -15.96442 -15.80261 -15.50311 -15.39553 -15.12039 -14.89512 -14.69093 -14.48380 -14.07144 -13.94625 -13.60903 -13.39018 -13.21958 -12.89518 -12.67340 -12.43766 -12.43251 -12.27130 -12.21386 -12.12615 -11.96399 -11.79809 -11.74440 -11.56198 -11.54554 -11.39428 -11.18505 -11.12227 -10.65985 -10.24657 -9.90083 -8.88793 -8.15537 -5.46382 -0.00429 0.82271 1.30593 1.41460 1.45881 1.50887 2.00394 2.14562 2.42651 2.62846 2.92469 3.06809 3.37059 3.58210 3.69509 3.70170 3.76316 3.80147 3.83530 3.96687 4.15592 4.27907 4.36408 4.41175 4.48710 4.53898 4.59845 4.67429 4.71742 4.72438 4.77283 4.80827 4.86259 4.92163 5.01456 5.01875 5.02191 5.08094 5.16603 5.21056 5.22059 5.26664 5.32241 5.36459 5.58703 5.88376 6.13856 6.23575 6.52835 6.94102 7.01244 7.64901 8.05381 9.04580 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.002429 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.055297 B =11522.725766 C =12217.777593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.055 4.055 3 C 0.138 3.862 4 N -0.697 5.697 5 C 0.599 3.401 6 O -0.570 6.570 7 C -0.098 4.098 8 C 0.027 3.973 9 O -0.193 6.193 10 C 0.231 3.769 11 C -0.095 4.095 12 C -0.148 4.148 13 C -0.152 4.152 14 N -0.479 5.479 15 C -0.114 4.114 16 C 0.145 3.855 17 N -0.619 5.619 18 C -0.246 4.246 19 H 0.048 0.952 20 C -0.038 4.038 21 N -0.959 5.959 22 Si 0.948 3.052 23 H -0.275 1.275 24 H -0.313 1.313 25 H -0.258 1.258 26 C 0.122 3.878 27 C -0.116 4.116 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.414 0.586 34 H 0.258 0.742 35 H 0.158 0.842 36 H 0.101 0.899 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.049 0.951 44 H 0.261 0.739 45 H 0.040 0.960 46 H 0.045 0.955 47 H 0.083 0.917 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.756 27.723 14.819 33.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.056 4.056 3 C 0.015 3.985 4 N -0.348 5.348 5 C 0.385 3.615 6 O -0.450 6.450 7 C -0.217 4.217 8 C -0.047 4.047 9 O -0.079 6.079 10 C 0.022 3.978 11 C -0.114 4.114 12 C -0.185 4.185 13 C -0.190 4.190 14 N -0.209 5.209 15 C -0.153 4.153 16 C 0.020 3.980 17 N -0.343 5.343 18 C -0.376 4.376 19 H 0.066 0.934 20 C -0.233 4.233 21 N -0.606 5.606 22 Si 0.777 3.223 23 H -0.202 1.202 24 H -0.242 1.242 25 H -0.182 1.182 26 C -0.003 4.003 27 C -0.155 4.155 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.252 0.748 34 H 0.273 0.727 35 H 0.176 0.824 36 H 0.119 0.881 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.102 0.898 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.465 27.368 14.196 32.559 hybrid contribution 0.074 -0.436 -0.769 0.887 sum -10.391 26.933 13.427 31.838 Atomic orbital electron populations 1.21928 0.93170 1.02212 1.02513 1.20569 0.96819 0.92399 0.95783 1.21405 0.98722 0.91224 0.87139 1.45825 1.52381 1.11000 1.25638 1.16938 0.79347 0.81879 0.83319 1.90804 1.39958 1.67229 1.47032 1.21716 1.06400 0.94856 0.98739 1.25786 0.96317 0.97783 0.84818 1.84384 1.51219 1.38525 1.33807 1.25778 0.95864 0.78549 0.97581 1.20566 1.01496 1.05560 0.83732 1.23250 1.02329 0.92635 1.00331 1.23265 0.98933 1.02604 0.94153 1.70686 1.15950 1.31604 1.02623 1.21939 1.00080 0.96077 0.97159 1.21109 0.97533 0.92140 0.87206 1.44454 1.67458 1.20726 1.01693 1.18861 1.18978 0.93884 1.05864 0.93374 1.25927 1.00447 0.96379 1.00529 1.69981 1.35470 1.23039 1.32102 0.85877 0.82063 0.75143 0.79176 1.20164 1.24245 1.18188 1.21397 0.97456 0.93128 0.88275 1.21912 1.00520 0.95487 0.97609 0.91608 0.92639 0.91507 0.90694 0.92171 0.74761 0.72658 0.82448 0.88088 0.84995 0.85192 0.88788 0.93384 0.90279 0.93941 0.93197 0.93055 0.94203 0.93641 0.89847 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 7.54 71.98 0.54 -2.93 16 2 C -0.06 -1.52 0.53 -52.16 -0.03 -1.55 16 3 C 0.14 3.57 4.56 86.38 0.39 3.97 16 4 N -0.70 -17.07 4.94 -466.37 -2.31 -19.38 16 5 C 0.60 15.94 7.81 86.66 0.68 16.62 16 6 O -0.57 -17.99 16.89 -4.06 -0.07 -18.06 16 7 C -0.10 -2.23 6.99 40.41 0.28 -1.95 16 8 C 0.03 0.46 11.95 67.32 0.80 1.27 16 9 O -0.19 -3.16 10.40 0.34 0.00 -3.16 16 10 C 0.23 3.99 7.80 88.39 0.69 4.68 16 11 C -0.09 -0.96 6.33 -11.54 -0.07 -1.03 16 12 C -0.15 -0.81 10.16 30.62 0.31 -0.50 16 13 C -0.15 -1.01 10.24 30.62 0.31 -0.69 16 14 N -0.48 -10.50 11.06 -293.03 -3.24 -13.74 16 15 C -0.11 -3.46 4.75 30.67 0.15 -3.32 16 16 C 0.14 5.44 6.05 86.36 0.52 5.96 16 17 N -0.62 -28.85 2.77 -699.10 -1.94 -30.78 16 18 C -0.25 -14.12 10.04 84.03 0.84 -13.28 16 19 H 0.05 3.04 8.06 -2.91 -0.02 3.01 16 20 C -0.04 -2.28 5.23 84.86 0.44 -1.83 16 21 N -0.96 -61.27 13.97 21.65 0.30 -60.97 16 22 Si 0.95 46.91 24.35 68.60 1.67 48.58 16 23 H -0.27 -12.85 6.62 99.48 0.66 -12.19 16 24 H -0.31 -15.83 7.11 99.48 0.71 -15.13 16 25 H -0.26 -12.02 6.63 99.48 0.66 -11.36 16 26 C 0.12 5.06 3.73 86.36 0.32 5.39 16 27 C -0.12 -3.80 4.91 30.67 0.15 -3.65 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.57 4.98 -2.39 -0.01 1.55 16 30 H 0.07 1.41 6.86 -2.39 -0.02 1.40 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 33 H 0.41 9.38 5.88 -92.71 -0.55 8.83 16 34 H 0.26 2.74 8.06 -2.91 -0.02 2.71 16 35 H 0.16 1.27 8.14 -2.38 -0.02 1.26 16 36 H 0.10 0.64 7.94 -2.39 -0.02 0.62 16 37 H 0.13 0.19 8.14 -2.38 -0.02 0.17 16 38 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 41 H 0.08 2.01 6.82 -2.39 -0.02 2.00 16 42 H 0.04 1.48 6.69 -2.39 -0.02 1.46 16 43 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 44 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 45 H 0.04 1.57 5.63 -2.39 -0.01 1.56 16 46 H 0.05 2.13 4.50 -2.39 -0.01 2.12 16 47 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 48 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -74.53 376.42 1.11 -73.41 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.35 Total: 16.96 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 6.34 Total: 7.14 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -7.18 Total: -124.87 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.07 Total: -21.22 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.67 Total: 48.58 kcal Total: -74.53 1.11 -73.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324891909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.797 kcal (2) G-P(sol) polarization free energy of solvation -74.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds