Wall clock time and date at job start Tue Mar 31 2020 17:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46490 * 109.46143 * 2 1 4 4 C 1.36935 * 120.00121 * 59.99448 * 3 2 1 5 5 H 1.07997 * 120.00139 * 0.02562 * 4 3 2 6 6 C 1.38816 * 120.00401 * 180.02562 * 4 3 2 7 7 N 1.31624 * 119.99569 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00172 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47055 * 180.02562 * 8 6 4 10 10 H 1.48505 * 109.46653 * 299.99639 * 8 6 4 11 11 H 1.48495 * 109.47483 * 60.00002 * 8 6 4 12 12 C 1.53044 * 109.45758 * 119.97296 * 2 1 3 13 13 C 1.53166 * 109.32485 * 181.38462 * 12 2 1 14 14 N 1.46920 * 108.77277 * 305.35644 * 13 12 2 15 15 C 1.34771 * 120.63299 * 233.59057 * 14 13 12 16 16 O 1.21281 * 120.00317 * 180.02562 * 15 14 13 17 17 C 1.50705 * 119.99810 * 0.02562 * 15 14 13 18 18 C 1.50704 * 109.47116 * 180.02562 * 17 15 14 19 19 C 1.35454 * 126.77477 * 89.99813 * 18 17 15 20 20 C 1.41378 * 103.98272 * 179.97438 * 19 18 17 21 21 C 1.50707 * 126.80100 * 180.02562 * 20 19 18 22 22 C 1.52994 * 117.49565 * 343.61892 * 21 20 19 23 23 C 1.52996 * 117.49618 * 274.99707 * 21 20 19 24 24 N 1.30172 * 106.39914 * 359.97438 * 20 19 18 25 25 O 1.20926 * 111.60601 * 359.73170 * 24 20 19 26 26 C 1.46932 * 118.73957 * 53.60099 * 14 13 12 27 27 C 1.53045 * 109.45779 * 240.02325 * 2 1 3 28 28 H 1.08997 * 109.46965 * 60.00526 * 1 2 3 29 29 H 1.09002 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46997 * 299.99987 * 1 2 3 31 31 H 0.97000 * 120.00577 * 240.00047 * 3 2 1 32 32 H 0.97001 * 119.99885 * 359.97438 * 7 6 4 33 33 H 1.09000 * 109.49970 * 301.32081 * 12 2 1 34 34 H 1.09001 * 109.50257 * 61.42230 * 12 2 1 35 35 H 1.08998 * 109.59021 * 185.56728 * 13 12 2 36 36 H 1.09004 * 109.70642 * 65.21502 * 13 12 2 37 37 H 1.08997 * 109.46649 * 299.99771 * 17 15 14 38 38 H 1.08996 * 109.47095 * 60.00220 * 17 15 14 39 39 H 1.07998 * 128.00742 * 359.97438 * 19 18 17 40 40 H 1.08993 * 115.54740 * 129.32549 * 21 20 19 41 41 H 1.09000 * 117.50163 * 359.97438 * 22 21 20 42 42 H 1.08998 * 117.49904 * 145.02615 * 22 21 20 43 43 H 1.08996 * 117.49696 * 214.98190 * 23 21 20 44 44 H 1.09001 * 117.49905 * 359.97277 * 23 21 20 45 45 H 1.08996 * 109.58846 * 186.60846 * 26 14 13 46 46 H 1.09003 * 109.57689 * 66.18349 * 26 14 13 47 47 H 1.08995 * 109.50050 * 298.57539 * 27 2 1 48 48 H 1.08996 * 109.49593 * 58.64892 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6871 2.2244 1.0269 5 1 1.0665 1.8710 1.8371 6 6 2.1491 3.5334 1.0267 7 7 2.9050 3.9642 0.0391 8 14 1.6981 4.6833 2.4280 9 1 2.3113 6.0151 2.1924 10 1 0.2213 4.8241 2.4969 11 1 2.2024 4.1252 3.7083 12 6 2.0398 -0.7209 1.2500 13 6 3.5711 -0.6890 1.2645 14 7 4.0677 -1.2493 0.0004 15 6 4.9616 -2.2579 0.0006 16 8 5.3643 -2.7115 -1.0497 17 6 5.4610 -2.8220 1.3058 18 6 6.4444 -3.9303 1.0306 19 6 7.7852 -3.8067 0.8832 20 6 8.2260 -5.1287 0.6454 21 6 9.6449 -5.5786 0.4093 22 6 10.6739 -4.5072 0.0431 23 6 10.1845 -5.4929 -1.0197 24 7 7.1638 -5.8807 0.6720 25 8 6.1657 -5.2339 0.8901 26 6 3.5714 -0.6891 -1.2640 27 6 2.0398 -0.7210 -1.2500 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 2.5757 1.6986 -0.7275 32 1 3.1395 3.3670 -0.6884 33 1 1.6574 -0.2208 2.1399 34 1 1.6976 -1.7558 1.2383 35 1 3.9412 -1.2849 2.0988 36 1 3.9163 0.3397 1.3689 37 1 5.9521 -2.0346 1.8776 38 1 4.6201 -3.2154 1.8769 39 1 8.3797 -2.9066 0.9352 40 1 9.9827 -6.4115 1.0258 41 1 10.3246 -3.4771 -0.0274 42 1 11.6891 -4.6351 0.4188 43 1 10.8777 -6.2694 -1.3433 44 1 9.5132 -5.1117 -1.7892 45 1 3.9417 -1.2851 -2.0980 46 1 3.9145 0.3404 -1.3670 47 1 1.6977 -1.7558 -1.2382 48 1 1.6570 -0.2213 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327991118.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:50 Heat of formation + Delta-G solvation = 65.493474 kcal Electronic energy + Delta-G solvation = -29112.699072 eV Core-core repulsion = 25172.229921 eV Total energy + Delta-G solvation = -3940.469151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.00464 -40.16954 -38.02165 -37.81708 -34.72432 -33.86465 -33.08275 -32.61049 -30.98407 -29.09663 -28.53558 -27.46371 -24.82002 -23.90516 -23.21039 -23.04230 -22.72585 -22.20821 -20.45646 -19.51896 -18.44487 -17.82587 -17.28378 -17.07459 -16.83810 -16.13257 -15.68633 -15.45856 -14.95616 -14.73931 -14.30365 -14.10258 -13.89007 -13.69025 -13.60204 -13.44392 -13.01191 -12.66310 -12.42670 -12.33515 -12.11871 -11.86661 -11.69700 -11.64388 -11.43648 -11.34307 -11.27574 -10.88572 -10.84820 -10.69004 -10.61049 -10.35522 -10.02982 -9.98116 -9.91563 -9.82928 -9.35612 -9.14820 -9.00291 -8.38663 -7.09535 -6.14087 -3.15244 1.33150 2.05834 2.62797 2.84692 3.25479 3.38207 3.46366 3.49119 3.66807 3.87038 4.26262 4.48954 4.51619 4.60656 4.63209 4.79620 4.85361 5.01938 5.05993 5.11497 5.19497 5.25966 5.28903 5.34356 5.44267 5.47518 5.52465 5.55424 5.62552 5.65108 5.73997 5.78310 5.88610 5.91749 5.92865 6.02000 6.12273 6.28019 6.30344 6.38007 6.44821 6.60063 6.70739 6.88416 6.95235 7.55551 7.76021 8.17225 8.20435 8.70119 9.16247 10.02995 10.18658 11.33480 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017939 B = 0.002590 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.445622 B =10806.146190 C =11383.631069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.203 3.797 3 N -0.728 5.728 4 C -0.323 4.323 5 H 0.065 0.935 6 C -0.044 4.044 7 N -0.944 5.944 8 Si 1.075 2.925 9 H -0.286 1.286 10 H -0.297 1.297 11 H -0.296 1.296 12 C -0.134 4.134 13 C 0.112 3.888 14 N -0.596 5.596 15 C 0.515 3.485 16 O -0.545 6.545 17 C -0.063 4.063 18 C -0.001 4.001 19 C -0.216 4.216 20 C 0.048 3.952 21 C -0.086 4.086 22 C -0.163 4.163 23 C -0.164 4.164 24 N -0.360 5.360 25 O 0.105 5.895 26 C 0.118 3.882 27 C -0.131 4.131 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.366 0.634 32 H 0.254 0.746 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.169 0.831 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.843 -15.803 2.999 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.111 3.889 3 N -0.372 5.372 4 C -0.454 4.454 5 H 0.083 0.917 6 C -0.242 4.242 7 N -0.589 5.589 8 Si 0.906 3.094 9 H -0.212 1.212 10 H -0.224 1.224 11 H -0.223 1.223 12 C -0.175 4.175 13 C -0.010 4.010 14 N -0.328 5.328 15 C 0.302 3.698 16 O -0.423 6.423 17 C -0.103 4.103 18 C -0.066 4.066 19 C -0.237 4.237 20 C -0.111 4.111 21 C -0.105 4.105 22 C -0.200 4.200 23 C -0.202 4.202 24 N -0.063 5.063 25 O 0.038 5.962 26 C -0.004 4.004 27 C -0.170 4.170 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.201 0.799 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.187 0.813 40 H 0.140 0.860 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.116 0.884 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.083 0.917 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.875 -15.846 3.064 18.419 hybrid contribution 0.059 -0.566 -0.585 0.817 sum 8.934 -16.413 2.479 18.850 Atomic orbital electron populations 1.22196 0.97438 0.99042 1.02170 1.19462 0.92220 0.85718 0.91477 1.42517 1.61178 1.06682 1.26786 1.19900 1.29659 0.94415 1.01441 0.91718 1.25654 0.99095 0.95949 1.03479 1.70896 1.38897 1.37949 1.11191 0.83302 0.75383 0.76414 0.74285 1.21194 1.22418 1.22342 1.22284 0.94403 0.99287 1.01480 1.21811 0.95520 1.00254 0.83408 1.48073 1.42065 1.34101 1.08589 1.20121 0.79510 0.79851 0.90349 1.90715 1.58155 1.60228 1.33209 1.20197 0.98303 0.93939 0.97896 1.23597 0.95083 0.85896 1.01977 1.22253 0.93887 0.98654 1.08939 1.22554 0.94988 0.90575 1.02946 1.20079 0.87449 1.02458 1.00537 1.23030 0.98361 0.95972 1.02641 1.23028 1.03145 1.02459 0.91528 1.73779 0.93750 1.20217 1.18580 1.84815 1.29597 1.16454 1.65361 1.21559 0.94136 0.99118 0.85621 1.22113 0.94827 1.00637 0.99379 0.93270 0.94503 0.92430 0.79941 0.93431 0.90409 0.93122 0.91159 0.89083 0.85435 0.86295 0.81303 0.86039 0.88129 0.87803 0.87944 0.88352 0.89742 0.90872 0.91699 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.44 37.16 0.31 -2.22 16 2 C 0.20 3.51 0.74 -131.78 -0.10 3.41 16 3 N -0.73 -15.72 4.14 -47.19 -0.20 -15.91 16 4 C -0.32 -7.97 8.68 -15.06 -0.13 -8.11 16 5 H 0.06 1.58 6.70 -52.49 -0.35 1.23 16 6 C -0.04 -1.17 5.50 -17.43 -0.10 -1.27 16 7 N -0.94 -27.35 13.70 55.49 0.76 -26.59 16 8 Si 1.07 24.36 29.92 -169.99 -5.09 19.28 16 9 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.30 -6.36 7.11 56.52 0.40 -5.96 16 12 C -0.13 -2.06 4.70 -26.62 -0.13 -2.18 16 13 C 0.11 1.60 6.08 -3.73 -0.02 1.58 16 14 N -0.60 -8.79 2.97 -172.78 -0.51 -9.30 16 15 C 0.52 7.52 7.69 -10.99 -0.08 7.44 16 16 O -0.54 -9.94 15.45 5.56 0.09 -9.85 16 17 C -0.06 -0.67 4.61 -29.03 -0.13 -0.80 16 18 C 0.00 -0.02 5.98 -35.30 -0.21 -0.23 16 19 C -0.22 -2.58 10.40 -39.38 -0.41 -2.99 16 20 C 0.05 0.61 6.95 -82.10 -0.57 0.04 16 21 C -0.09 -0.84 6.33 -91.77 -0.58 -1.42 16 22 C -0.16 -1.25 10.04 -26.73 -0.27 -1.52 16 23 C -0.16 -1.42 10.23 -26.73 -0.27 -1.69 16 24 N -0.36 -5.29 12.07 33.42 0.40 -4.89 16 25 O 0.10 1.50 11.20 17.17 0.19 1.70 16 26 C 0.12 1.86 6.16 -3.71 -0.02 1.84 16 27 C -0.13 -2.02 4.96 -26.61 -0.13 -2.15 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.05 7.27 -51.93 -0.38 0.68 16 31 H 0.37 8.44 5.29 -40.82 -0.22 8.22 16 32 H 0.25 7.25 6.77 -40.82 -0.28 6.98 16 33 H 0.08 1.28 7.31 -51.93 -0.38 0.90 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.75 5.93 -51.93 -0.31 0.44 16 36 H 0.09 1.59 7.75 -51.93 -0.40 1.19 16 37 H 0.13 1.04 7.94 -51.93 -0.41 0.63 16 38 H 0.12 1.00 7.69 -51.93 -0.40 0.60 16 39 H 0.17 1.64 7.63 -52.49 -0.40 1.24 16 40 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.10 0.79 7.35 -51.93 -0.38 0.41 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.08 1.35 7.01 -51.93 -0.36 0.99 16 46 H 0.07 1.26 6.94 -51.93 -0.36 0.90 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 383.13 15.07 5.77 5.77 Total: -1.00 -31.77 383.13 -8.66 -40.43 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -7.23 Total: 9.64 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -2.85 Total: -10.28 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.45 Total: -56.69 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.28 Total: -8.15 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.09 Total: 19.28 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.77 -8.66 -40.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327991118.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.922 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds