Wall clock time and date at job start Tue Mar 31 2020 17:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46490 * 109.46143 * 2 1 4 4 C 1.36935 * 120.00121 * 59.99448 * 3 2 1 5 5 H 1.07997 * 120.00139 * 0.02562 * 4 3 2 6 6 C 1.38816 * 120.00401 * 180.02562 * 4 3 2 7 7 N 1.31624 * 119.99569 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00172 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47055 * 180.02562 * 8 6 4 10 10 H 1.48505 * 109.46653 * 299.99639 * 8 6 4 11 11 H 1.48495 * 109.47483 * 60.00002 * 8 6 4 12 12 C 1.53044 * 109.45758 * 119.97296 * 2 1 3 13 13 C 1.53166 * 109.32485 * 181.38462 * 12 2 1 14 14 N 1.46920 * 108.77277 * 305.35644 * 13 12 2 15 15 C 1.34771 * 120.63299 * 233.59057 * 14 13 12 16 16 O 1.21281 * 120.00317 * 180.02562 * 15 14 13 17 17 C 1.50705 * 119.99810 * 0.02562 * 15 14 13 18 18 C 1.50704 * 109.47116 * 180.02562 * 17 15 14 19 19 C 1.35454 * 126.77477 * 89.99813 * 18 17 15 20 20 C 1.41378 * 103.98272 * 179.97438 * 19 18 17 21 21 C 1.50707 * 126.80100 * 180.02562 * 20 19 18 22 22 C 1.52994 * 117.49565 * 343.61892 * 21 20 19 23 23 C 1.52996 * 117.49618 * 274.99707 * 21 20 19 24 24 N 1.30172 * 106.39914 * 359.97438 * 20 19 18 25 25 O 1.20926 * 111.60601 * 359.73170 * 24 20 19 26 26 C 1.46932 * 118.73957 * 53.60099 * 14 13 12 27 27 C 1.53045 * 109.45779 * 240.02325 * 2 1 3 28 28 H 1.08997 * 109.46965 * 60.00526 * 1 2 3 29 29 H 1.09002 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46997 * 299.99987 * 1 2 3 31 31 H 0.97000 * 120.00577 * 240.00047 * 3 2 1 32 32 H 0.97001 * 119.99885 * 359.97438 * 7 6 4 33 33 H 1.09000 * 109.49970 * 301.32081 * 12 2 1 34 34 H 1.09001 * 109.50257 * 61.42230 * 12 2 1 35 35 H 1.08998 * 109.59021 * 185.56728 * 13 12 2 36 36 H 1.09004 * 109.70642 * 65.21502 * 13 12 2 37 37 H 1.08997 * 109.46649 * 299.99771 * 17 15 14 38 38 H 1.08996 * 109.47095 * 60.00220 * 17 15 14 39 39 H 1.07998 * 128.00742 * 359.97438 * 19 18 17 40 40 H 1.08993 * 115.54740 * 129.32549 * 21 20 19 41 41 H 1.09000 * 117.50163 * 359.97438 * 22 21 20 42 42 H 1.08998 * 117.49904 * 145.02615 * 22 21 20 43 43 H 1.08996 * 117.49696 * 214.98190 * 23 21 20 44 44 H 1.09001 * 117.49905 * 359.97277 * 23 21 20 45 45 H 1.08996 * 109.58846 * 186.60846 * 26 14 13 46 46 H 1.09003 * 109.57689 * 66.18349 * 26 14 13 47 47 H 1.08995 * 109.50050 * 298.57539 * 27 2 1 48 48 H 1.08996 * 109.49593 * 58.64892 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6871 2.2244 1.0269 5 1 1.0665 1.8710 1.8371 6 6 2.1491 3.5334 1.0267 7 7 2.9050 3.9642 0.0391 8 14 1.6981 4.6833 2.4280 9 1 2.3113 6.0151 2.1924 10 1 0.2213 4.8241 2.4969 11 1 2.2024 4.1252 3.7083 12 6 2.0398 -0.7209 1.2500 13 6 3.5711 -0.6890 1.2645 14 7 4.0677 -1.2493 0.0004 15 6 4.9616 -2.2579 0.0006 16 8 5.3643 -2.7115 -1.0497 17 6 5.4610 -2.8220 1.3058 18 6 6.4444 -3.9303 1.0306 19 6 7.7852 -3.8067 0.8832 20 6 8.2260 -5.1287 0.6454 21 6 9.6449 -5.5786 0.4093 22 6 10.6739 -4.5072 0.0431 23 6 10.1845 -5.4929 -1.0197 24 7 7.1638 -5.8807 0.6720 25 8 6.1657 -5.2339 0.8901 26 6 3.5714 -0.6891 -1.2640 27 6 2.0398 -0.7210 -1.2500 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 2.5757 1.6986 -0.7275 32 1 3.1395 3.3670 -0.6884 33 1 1.6574 -0.2208 2.1399 34 1 1.6976 -1.7558 1.2383 35 1 3.9412 -1.2849 2.0988 36 1 3.9163 0.3397 1.3689 37 1 5.9521 -2.0346 1.8776 38 1 4.6201 -3.2154 1.8769 39 1 8.3797 -2.9066 0.9352 40 1 9.9827 -6.4115 1.0258 41 1 10.3246 -3.4771 -0.0274 42 1 11.6891 -4.6351 0.4188 43 1 10.8777 -6.2694 -1.3433 44 1 9.5132 -5.1117 -1.7892 45 1 3.9417 -1.2851 -2.0980 46 1 3.9145 0.3404 -1.3670 47 1 1.6977 -1.7558 -1.2382 48 1 1.6570 -0.2213 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327991118.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:49 Heat of formation + Delta-G solvation = 47.373421 kcal Electronic energy + Delta-G solvation = -29113.484816 eV Core-core repulsion = 25172.229921 eV Total energy + Delta-G solvation = -3941.254895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -45.97038 -41.40062 -39.37562 -38.52520 -36.21122 -34.84436 -34.36058 -33.94964 -32.22520 -30.60509 -29.86494 -28.67404 -25.72555 -25.65260 -24.37505 -24.28096 -23.71317 -22.98444 -21.57043 -20.58135 -19.80322 -18.95109 -18.77532 -18.26428 -17.99394 -17.03971 -16.92554 -16.57967 -16.32884 -15.82380 -15.50866 -15.34769 -15.07105 -14.98469 -14.95446 -14.66590 -14.15579 -14.08873 -13.59271 -13.27430 -13.22115 -13.01645 -12.78287 -12.69392 -12.57890 -12.56488 -12.44754 -12.24105 -12.11356 -12.07460 -11.88756 -11.72664 -11.44528 -11.39356 -11.10221 -10.92184 -10.79315 -10.71973 -10.36144 -9.68204 -8.95489 -8.21132 -5.15196 0.36811 1.14483 1.50594 1.63946 1.72139 1.86329 1.87344 2.19073 2.67834 2.79559 3.09113 3.39067 3.47782 3.54630 3.71590 3.81700 3.90316 3.91480 3.98269 4.02171 4.07489 4.11821 4.23565 4.26117 4.31344 4.38058 4.52156 4.62148 4.65463 4.66650 4.72016 4.76008 4.81048 4.89951 4.96745 4.99447 5.03143 5.05660 5.06715 5.14264 5.17432 5.27146 5.34879 5.52238 5.63447 5.79995 6.39657 6.64778 7.04671 7.21955 7.23978 8.15075 8.28303 9.30385 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017939 B = 0.002590 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.445622 B =10806.146190 C =11383.631069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.191 3.809 3 N -0.735 5.735 4 C -0.295 4.295 5 H 0.070 0.930 6 C -0.109 4.109 7 N -0.986 5.986 8 Si 1.116 2.884 9 H -0.304 1.304 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.130 4.130 13 C 0.117 3.883 14 N -0.594 5.594 15 C 0.515 3.485 16 O -0.586 6.586 17 C -0.055 4.055 18 C -0.009 4.009 19 C -0.221 4.221 20 C 0.043 3.957 21 C -0.105 4.105 22 C -0.145 4.145 23 C -0.168 4.168 24 N -0.392 5.392 25 O 0.086 5.914 26 C 0.121 3.879 27 C -0.121 4.121 28 H 0.035 0.965 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.356 0.644 32 H 0.242 0.758 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.056 0.944 37 H 0.159 0.841 38 H 0.150 0.850 39 H 0.189 0.811 40 H 0.133 0.867 41 H 0.098 0.902 42 H 0.129 0.871 43 H 0.122 0.878 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.050 0.950 47 H 0.083 0.917 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.111 -17.317 4.916 20.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.102 3.898 3 N -0.378 5.378 4 C -0.427 4.427 5 H 0.088 0.912 6 C -0.299 4.299 7 N -0.635 5.635 8 Si 0.944 3.056 9 H -0.231 1.231 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.170 4.170 13 C -0.005 4.005 14 N -0.326 5.326 15 C 0.304 3.696 16 O -0.467 6.467 17 C -0.095 4.095 18 C -0.073 4.073 19 C -0.242 4.242 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.182 4.182 23 C -0.206 4.206 24 N -0.097 5.097 25 O 0.022 5.978 26 C -0.002 4.002 27 C -0.159 4.159 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.189 0.811 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.134 0.866 36 H 0.074 0.926 37 H 0.177 0.823 38 H 0.168 0.832 39 H 0.207 0.793 40 H 0.150 0.850 41 H 0.116 0.884 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.068 0.932 47 H 0.102 0.898 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.093 -17.408 5.016 20.270 hybrid contribution -0.043 -0.191 -1.249 1.264 sum 9.051 -17.599 3.767 20.145 Atomic orbital electron populations 1.22129 0.96843 1.00632 1.00705 1.19803 0.92549 0.83877 0.93594 1.42693 1.61035 1.08310 1.25741 1.20152 1.26974 0.94257 1.01343 0.91164 1.26770 0.99963 0.98234 1.04979 1.70995 1.41947 1.38201 1.12382 0.82733 0.75579 0.74153 0.73132 1.23136 1.21256 1.20111 1.22217 0.95006 1.00348 0.99439 1.21790 0.94918 0.99305 0.84476 1.48084 1.42167 1.34121 1.08230 1.20766 0.78493 0.79065 0.91315 1.90706 1.59338 1.61425 1.35196 1.20333 0.99268 0.94017 0.95883 1.23993 0.95831 0.85738 1.01738 1.22616 0.94100 0.99125 1.08407 1.23111 0.95862 0.90878 1.01671 1.20273 0.86523 1.04052 1.01507 1.23147 0.98879 0.95236 1.00941 1.23077 1.03203 1.03600 0.90698 1.73763 0.94441 1.21273 1.20272 1.84766 1.29793 1.17272 1.65947 1.21382 0.94502 0.97814 0.86502 1.22021 0.94287 1.01273 0.98358 0.94626 0.91394 0.93962 0.81135 0.94731 0.91303 0.90294 0.86617 0.92552 0.82342 0.83224 0.79336 0.84973 0.88363 0.85290 0.85962 0.90352 0.90184 0.93165 0.89822 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 8.44 71.98 0.61 -4.01 16 2 C 0.19 6.34 0.74 3.64 0.00 6.35 16 3 N -0.74 -31.83 4.14 -303.23 -1.25 -33.08 16 4 C -0.30 -14.49 8.68 84.03 0.73 -13.76 16 5 H 0.07 3.34 6.70 -2.91 -0.02 3.32 16 6 C -0.11 -5.84 5.50 84.86 0.47 -5.37 16 7 N -0.99 -58.71 13.70 21.65 0.30 -58.42 16 8 Si 1.12 49.19 29.92 68.60 2.05 51.24 16 9 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 10 H -0.29 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 12 C -0.13 -3.61 4.70 30.66 0.14 -3.47 16 13 C 0.12 3.03 6.08 86.35 0.52 3.56 16 14 N -0.59 -16.51 2.97 -818.95 -2.43 -18.94 16 15 C 0.51 14.04 7.69 87.66 0.67 14.72 16 16 O -0.59 -21.01 15.45 -3.03 -0.05 -21.06 16 17 C -0.06 -0.99 4.61 29.10 0.13 -0.86 16 18 C -0.01 -0.21 5.98 25.04 0.15 -0.06 16 19 C -0.22 -4.96 10.40 22.40 0.23 -4.72 16 20 C 0.04 1.06 6.95 43.58 0.30 1.36 16 21 C -0.10 -1.90 6.33 -11.54 -0.07 -1.97 16 22 C -0.14 -1.91 10.04 30.59 0.31 -1.60 16 23 C -0.17 -2.70 10.23 30.59 0.31 -2.39 16 24 N -0.39 -11.40 12.07 -49.55 -0.60 -12.00 16 25 O 0.09 2.42 11.20 71.60 0.80 3.22 16 26 C 0.12 3.80 6.16 86.36 0.53 4.33 16 27 C -0.12 -3.58 4.96 30.67 0.15 -3.43 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 1.47 7.27 -2.39 -0.02 1.45 16 31 H 0.36 16.91 5.29 -92.71 -0.49 16.42 16 32 H 0.24 14.40 6.77 -92.71 -0.63 13.77 16 33 H 0.07 2.07 7.31 -2.39 -0.02 2.05 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 35 H 0.12 1.95 5.93 -2.39 -0.01 1.93 16 36 H 0.06 1.90 7.75 -2.38 -0.02 1.88 16 37 H 0.16 1.90 7.94 -2.39 -0.02 1.88 16 38 H 0.15 1.81 7.69 -2.39 -0.02 1.79 16 39 H 0.19 3.26 7.63 -2.91 -0.02 3.24 16 40 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.10 1.35 7.35 -2.39 -0.02 1.33 16 42 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.08 2.59 7.01 -2.39 -0.02 2.57 16 46 H 0.05 1.80 6.94 -2.39 -0.02 1.79 16 47 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -71.67 383.13 4.65 -67.02 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: 0.63 Total: 33.35 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 5.20 Total: -11.34 kcal Atomic # 7 Polarization: -118.45 SS G_CDS: -3.99 Total: -122.44 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.75 Total: -17.84 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 2.05 Total: 51.24 kcal Total: -71.67 4.65 -67.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327991118.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.397 kcal (2) G-P(sol) polarization free energy of solvation -71.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds