Wall clock time and date at job start Tue Mar 31 2020 17:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.46289 * 2 1 4 4 C 1.36929 * 120.00287 * 60.00125 * 3 2 1 5 5 H 1.08002 * 120.00193 * 0.02562 * 4 3 2 6 6 C 1.38813 * 120.00402 * 179.97438 * 4 3 2 7 7 N 1.31622 * 119.99945 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00219 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47070 * 179.97438 * 8 6 4 10 10 H 1.48506 * 109.46818 * 299.99975 * 8 6 4 11 11 H 1.48500 * 109.47115 * 59.99784 * 8 6 4 12 12 C 1.53044 * 109.45877 * 119.97679 * 2 1 3 13 13 C 1.53160 * 109.32711 * 181.38321 * 12 2 1 14 14 N 1.46929 * 108.77141 * 305.35242 * 13 12 2 15 15 C 1.34767 * 120.63158 * 233.59179 * 14 13 12 16 16 O 1.21587 * 120.00032 * 355.52908 * 15 14 13 17 17 C 1.47510 * 120.00038 * 175.52899 * 15 14 13 18 18 O 1.35186 * 127.15567 * 7.10654 * 17 15 14 19 19 N 1.21478 * 111.55594 * 179.97438 * 18 17 15 20 20 C 1.29067 * 111.68204 * 359.90714 * 19 18 17 21 21 C 1.35254 * 127.15598 * 186.79508 * 17 15 14 22 22 C 1.50109 * 131.33352 * 0.36723 * 21 17 15 23 23 C 1.53569 * 108.01499 * 163.70802 * 22 21 17 24 24 C 1.53011 * 109.79857 * 50.05060 * 23 22 21 25 25 C 1.50653 * 130.33014 * 180.41947 * 20 19 18 26 26 C 1.46924 * 118.73406 * 53.60863 * 14 13 12 27 27 C 1.53048 * 109.45808 * 240.02327 * 2 1 3 28 28 H 1.09006 * 109.47113 * 59.99967 * 1 2 3 29 29 H 1.08998 * 109.47823 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46818 * 300.00320 * 1 2 3 31 31 H 0.97008 * 119.99864 * 239.99976 * 3 2 1 32 32 H 0.97001 * 119.99349 * 0.02562 * 7 6 4 33 33 H 1.09009 * 109.49216 * 301.31897 * 12 2 1 34 34 H 1.08992 * 109.50089 * 61.41327 * 12 2 1 35 35 H 1.08998 * 109.59044 * 185.56543 * 13 12 2 36 36 H 1.09006 * 109.59574 * 65.13615 * 13 12 2 37 37 H 1.09002 * 109.75539 * 283.34350 * 22 21 17 38 38 H 1.09005 * 109.75334 * 44.03229 * 22 21 17 39 39 H 1.09003 * 109.41630 * 170.14220 * 23 22 21 40 40 H 1.08995 * 109.42281 * 290.01564 * 23 22 21 41 41 H 1.08996 * 109.38593 * 48.42967 * 24 23 22 42 42 H 1.08999 * 109.37767 * 168.21104 * 24 23 22 43 43 H 1.09000 * 109.74328 * 282.81075 * 25 20 19 44 44 H 1.08993 * 109.74211 * 43.52360 * 25 20 19 45 45 H 1.09008 * 109.58513 * 186.61157 * 26 14 13 46 46 H 1.08997 * 109.58807 * 66.18423 * 26 14 13 47 47 H 1.08996 * 109.50009 * 298.58283 * 27 2 1 48 48 H 1.09002 * 109.49181 * 58.64925 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6872 2.2244 1.0270 5 1 1.0667 1.8710 1.8372 6 6 2.1502 3.5330 1.0272 7 7 2.9076 3.9633 0.0406 8 14 1.6994 4.6830 2.4286 9 1 2.3147 6.0139 2.1941 10 1 0.2227 4.8248 2.4970 11 1 2.2028 4.1240 3.7090 12 6 2.0398 -0.7210 1.2500 13 6 3.5710 -0.6891 1.2645 14 7 4.0676 -1.2495 0.0003 15 6 4.9615 -2.2581 0.0005 16 8 5.4261 -2.6585 1.0503 17 6 5.3762 -2.8763 -1.2730 18 8 5.0599 -2.4651 -2.5214 19 7 5.5548 -3.1835 -3.3667 20 6 6.2453 -4.1369 -2.8375 21 6 6.1567 -3.9690 -1.4347 22 6 6.8184 -4.8715 -0.4342 23 6 7.2286 -6.1625 -1.1575 24 6 7.9979 -5.8189 -2.4347 25 6 7.0330 -5.2459 -3.4851 26 6 3.5714 -0.6891 -1.2640 27 6 2.0398 -0.7210 -1.2500 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.5758 1.6986 -0.7276 32 1 3.1420 3.3660 -0.6869 33 1 1.6573 -0.2208 2.1398 34 1 1.6975 -1.7557 1.2383 35 1 3.9411 -1.2850 2.0987 36 1 3.9143 0.3404 1.3676 37 1 7.7019 -4.3821 -0.0242 38 1 6.1202 -5.1048 0.3698 39 1 7.8630 -6.7592 -0.5020 40 1 6.3362 -6.7327 -1.4155 41 1 8.7698 -5.0842 -2.2056 42 1 8.4637 -6.7215 -2.8303 43 1 6.3540 -6.0218 -3.8387 44 1 7.6075 -4.8492 -4.3220 45 1 3.9416 -1.2853 -2.0982 46 1 3.9145 0.3403 -1.3671 47 1 1.6975 -1.7558 -1.2382 48 1 1.6569 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328003572.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:23 Heat of formation + Delta-G solvation = 39.306150 kcal Electronic energy + Delta-G solvation = -30114.007135 eV Core-core repulsion = 26172.402417 eV Total energy + Delta-G solvation = -3941.604718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.09851 -40.06142 -38.24775 -37.76771 -34.81117 -33.19184 -32.57426 -32.54451 -30.98586 -29.98177 -28.78659 -27.85466 -25.42821 -24.01125 -23.90975 -23.43796 -22.81397 -21.82939 -20.28675 -19.95835 -18.65473 -17.86736 -17.35686 -16.99511 -16.30538 -16.04681 -15.40269 -15.22760 -14.73839 -14.59112 -14.25281 -14.21066 -13.89451 -13.58708 -13.55607 -13.39502 -13.14558 -13.00646 -12.74691 -12.56488 -12.08814 -11.96104 -11.63934 -11.44029 -11.33056 -11.29134 -11.28464 -10.85898 -10.79344 -10.75716 -10.52887 -10.34162 -10.11969 -10.09780 -9.96392 -9.82167 -9.59501 -9.10393 -8.95873 -8.41332 -7.05030 -6.09420 -3.10352 0.76724 1.92135 2.52068 3.00496 3.20010 3.51396 3.53869 3.66034 3.71382 4.15545 4.44114 4.49346 4.60116 4.65699 4.71855 4.89527 5.04748 5.08702 5.16855 5.20209 5.27536 5.30426 5.43650 5.47871 5.49617 5.59617 5.61645 5.66927 5.69142 5.72177 5.77758 5.91903 5.92357 5.98491 5.99141 6.11353 6.20101 6.27448 6.32424 6.41774 6.51505 6.60893 6.77237 6.91718 6.97159 7.42859 7.81122 7.89469 8.11828 8.74984 9.20756 10.07423 10.22631 11.38299 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.002964 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.281349 B = 9444.273536 C = 9597.255234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.202 3.798 3 N -0.728 5.728 4 C -0.323 4.323 5 H 0.065 0.935 6 C -0.044 4.044 7 N -0.944 5.944 8 Si 1.075 2.925 9 H -0.286 1.286 10 H -0.297 1.297 11 H -0.296 1.296 12 C -0.133 4.133 13 C 0.122 3.878 14 N -0.582 5.582 15 C 0.597 3.403 16 O -0.523 6.523 17 C -0.069 4.069 18 O 0.099 5.901 19 N -0.340 5.340 20 C 0.017 3.983 21 C -0.126 4.126 22 C -0.047 4.047 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.040 4.040 26 C 0.097 3.903 27 C -0.130 4.130 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.366 0.634 32 H 0.254 0.746 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.478 -20.572 -4.982 22.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.111 3.889 3 N -0.372 5.372 4 C -0.454 4.454 5 H 0.083 0.917 6 C -0.241 4.241 7 N -0.590 5.590 8 Si 0.906 3.094 9 H -0.212 1.212 10 H -0.224 1.224 11 H -0.223 1.223 12 C -0.173 4.173 13 C 0.002 3.998 14 N -0.313 5.313 15 C 0.382 3.618 16 O -0.400 6.400 17 C -0.133 4.133 18 O 0.034 5.966 19 N -0.046 5.046 20 C -0.144 4.144 21 C -0.131 4.131 22 C -0.084 4.084 23 C -0.159 4.159 24 C -0.157 4.157 25 C -0.078 4.078 26 C -0.026 4.026 27 C -0.169 4.169 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.201 0.799 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.113 0.887 46 H 0.100 0.900 47 H 0.084 0.916 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.475 -18.881 -4.863 20.545 hybrid contribution -0.035 -1.574 -0.298 1.602 sum 6.441 -20.455 -5.162 22.057 Atomic orbital electron populations 1.22192 0.97351 0.99033 1.02222 1.19480 0.92299 0.85733 0.91400 1.42509 1.61216 1.06662 1.26792 1.19901 1.29622 0.94392 1.01446 0.91700 1.25652 0.99033 0.95979 1.03482 1.70898 1.38863 1.37939 1.11266 0.83300 0.75328 0.76376 0.74362 1.21191 1.22413 1.22325 1.22300 0.94454 0.99181 1.01390 1.21713 0.94664 0.99946 0.83525 1.48068 1.41036 1.32842 1.09363 1.16659 0.80099 0.80051 0.84974 1.90816 1.55942 1.63456 1.29820 1.23566 1.03562 0.99016 0.87166 1.85386 1.55992 1.43585 1.11646 1.73416 1.10917 1.04489 1.15821 1.23364 1.00820 0.98390 0.91788 1.21076 0.99614 0.96943 0.95489 1.20085 1.00346 0.92933 0.95078 1.21683 1.00641 0.96922 0.96652 1.21675 0.97715 1.01390 0.94916 1.20172 0.96508 0.93156 0.97945 1.22228 0.95308 1.00240 0.84784 1.22110 0.94246 1.00807 0.99708 0.93217 0.94518 0.92369 0.79938 0.93472 0.90286 0.93230 0.90055 0.89106 0.89391 0.89124 0.90637 0.91465 0.91141 0.90501 0.89275 0.89553 0.88688 0.89974 0.91635 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.44 37.16 0.31 -2.30 16 2 C 0.20 3.68 0.74 -131.78 -0.10 3.58 16 3 N -0.73 -16.36 4.13 -47.19 -0.19 -16.56 16 4 C -0.32 -8.29 8.68 -15.06 -0.13 -8.42 16 5 H 0.07 1.66 6.70 -52.49 -0.35 1.31 16 6 C -0.04 -1.21 5.50 -17.43 -0.10 -1.30 16 7 N -0.94 -28.04 13.70 55.49 0.76 -27.28 16 8 Si 1.07 25.24 29.92 -169.99 -5.09 20.16 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.30 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.30 -6.66 7.11 56.52 0.40 -6.26 16 12 C -0.13 -2.31 4.70 -26.63 -0.13 -2.44 16 13 C 0.12 2.18 6.16 -3.73 -0.02 2.16 16 14 N -0.58 -9.66 2.97 -174.02 -0.52 -10.18 16 15 C 0.60 9.86 7.69 -12.49 -0.10 9.77 16 16 O -0.52 -9.49 15.48 5.29 0.08 -9.41 16 17 C -0.07 -1.02 6.96 -36.87 -0.26 -1.28 16 18 O 0.10 1.44 7.82 13.83 0.11 1.55 16 19 N -0.34 -4.79 12.03 33.15 0.40 -4.39 16 20 C 0.02 0.21 7.21 -82.51 -0.60 -0.38 16 21 C -0.13 -1.62 6.02 -104.70 -0.63 -2.25 16 22 C -0.05 -0.49 5.57 -27.87 -0.16 -0.64 16 23 C -0.12 -0.88 5.87 -26.43 -0.16 -1.03 16 24 C -0.12 -0.78 5.85 -26.36 -0.15 -0.93 16 25 C -0.04 -0.32 6.32 -27.54 -0.17 -0.50 16 26 C 0.10 1.52 6.06 -3.71 -0.02 1.50 16 27 C -0.13 -2.02 4.96 -26.61 -0.13 -2.15 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.11 7.27 -51.93 -0.38 0.73 16 31 H 0.37 8.64 5.29 -40.82 -0.22 8.42 16 32 H 0.25 7.40 6.77 -40.82 -0.28 7.12 16 33 H 0.08 1.47 7.31 -51.92 -0.38 1.09 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.42 7.03 -51.93 -0.37 1.05 16 36 H 0.09 1.88 7.74 -51.93 -0.40 1.48 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.00 7.91 -51.93 -0.41 0.59 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 41 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.10 1.37 3.83 -54.57 -0.21 1.17 16 46 H 0.08 1.41 6.94 -51.93 -0.36 1.05 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -30.52 368.53 -8.64 -39.16 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -7.21 Total: 8.03 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.53 Total: -6.63 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.45 Total: -58.41 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.19 Total: -7.86 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.09 Total: 20.16 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.52 -8.64 -39.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328003572.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.462 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds