Wall clock time and date at job start Tue Mar 31 2020 17:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.46289 * 2 1 4 4 C 1.36929 * 120.00287 * 60.00125 * 3 2 1 5 5 H 1.08002 * 120.00193 * 0.02562 * 4 3 2 6 6 C 1.38813 * 120.00402 * 179.97438 * 4 3 2 7 7 N 1.31622 * 119.99945 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00219 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47070 * 179.97438 * 8 6 4 10 10 H 1.48506 * 109.46818 * 299.99975 * 8 6 4 11 11 H 1.48500 * 109.47115 * 59.99784 * 8 6 4 12 12 C 1.53044 * 109.45877 * 119.97679 * 2 1 3 13 13 C 1.53160 * 109.32711 * 181.38321 * 12 2 1 14 14 N 1.46929 * 108.77141 * 305.35242 * 13 12 2 15 15 C 1.34767 * 120.63158 * 233.59179 * 14 13 12 16 16 O 1.21587 * 120.00032 * 355.52908 * 15 14 13 17 17 C 1.47510 * 120.00038 * 175.52899 * 15 14 13 18 18 O 1.35186 * 127.15567 * 7.10654 * 17 15 14 19 19 N 1.21478 * 111.55594 * 179.97438 * 18 17 15 20 20 C 1.29067 * 111.68204 * 359.90714 * 19 18 17 21 21 C 1.35254 * 127.15598 * 186.79508 * 17 15 14 22 22 C 1.50109 * 131.33352 * 0.36723 * 21 17 15 23 23 C 1.53569 * 108.01499 * 163.70802 * 22 21 17 24 24 C 1.53011 * 109.79857 * 50.05060 * 23 22 21 25 25 C 1.50653 * 130.33014 * 180.41947 * 20 19 18 26 26 C 1.46924 * 118.73406 * 53.60863 * 14 13 12 27 27 C 1.53048 * 109.45808 * 240.02327 * 2 1 3 28 28 H 1.09006 * 109.47113 * 59.99967 * 1 2 3 29 29 H 1.08998 * 109.47823 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46818 * 300.00320 * 1 2 3 31 31 H 0.97008 * 119.99864 * 239.99976 * 3 2 1 32 32 H 0.97001 * 119.99349 * 0.02562 * 7 6 4 33 33 H 1.09009 * 109.49216 * 301.31897 * 12 2 1 34 34 H 1.08992 * 109.50089 * 61.41327 * 12 2 1 35 35 H 1.08998 * 109.59044 * 185.56543 * 13 12 2 36 36 H 1.09006 * 109.59574 * 65.13615 * 13 12 2 37 37 H 1.09002 * 109.75539 * 283.34350 * 22 21 17 38 38 H 1.09005 * 109.75334 * 44.03229 * 22 21 17 39 39 H 1.09003 * 109.41630 * 170.14220 * 23 22 21 40 40 H 1.08995 * 109.42281 * 290.01564 * 23 22 21 41 41 H 1.08996 * 109.38593 * 48.42967 * 24 23 22 42 42 H 1.08999 * 109.37767 * 168.21104 * 24 23 22 43 43 H 1.09000 * 109.74328 * 282.81075 * 25 20 19 44 44 H 1.08993 * 109.74211 * 43.52360 * 25 20 19 45 45 H 1.09008 * 109.58513 * 186.61157 * 26 14 13 46 46 H 1.08997 * 109.58807 * 66.18423 * 26 14 13 47 47 H 1.08996 * 109.50009 * 298.58283 * 27 2 1 48 48 H 1.09002 * 109.49181 * 58.64925 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6872 2.2244 1.0270 5 1 1.0667 1.8710 1.8372 6 6 2.1502 3.5330 1.0272 7 7 2.9076 3.9633 0.0406 8 14 1.6994 4.6830 2.4286 9 1 2.3147 6.0139 2.1941 10 1 0.2227 4.8248 2.4970 11 1 2.2028 4.1240 3.7090 12 6 2.0398 -0.7210 1.2500 13 6 3.5710 -0.6891 1.2645 14 7 4.0676 -1.2495 0.0003 15 6 4.9615 -2.2581 0.0005 16 8 5.4261 -2.6585 1.0503 17 6 5.3762 -2.8763 -1.2730 18 8 5.0599 -2.4651 -2.5214 19 7 5.5548 -3.1835 -3.3667 20 6 6.2453 -4.1369 -2.8375 21 6 6.1567 -3.9690 -1.4347 22 6 6.8184 -4.8715 -0.4342 23 6 7.2286 -6.1625 -1.1575 24 6 7.9979 -5.8189 -2.4347 25 6 7.0330 -5.2459 -3.4851 26 6 3.5714 -0.6891 -1.2640 27 6 2.0398 -0.7210 -1.2500 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.5758 1.6986 -0.7276 32 1 3.1420 3.3660 -0.6869 33 1 1.6573 -0.2208 2.1398 34 1 1.6975 -1.7557 1.2383 35 1 3.9411 -1.2850 2.0987 36 1 3.9143 0.3404 1.3676 37 1 7.7019 -4.3821 -0.0242 38 1 6.1202 -5.1048 0.3698 39 1 7.8630 -6.7592 -0.5020 40 1 6.3362 -6.7327 -1.4155 41 1 8.7698 -5.0842 -2.2056 42 1 8.4637 -6.7215 -2.8303 43 1 6.3540 -6.0218 -3.8387 44 1 7.6075 -4.8492 -4.3220 45 1 3.9416 -1.2853 -2.0982 46 1 3.9145 0.3403 -1.3671 47 1 1.6975 -1.7558 -1.2382 48 1 1.6569 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328003572.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:22 Heat of formation + Delta-G solvation = 21.805111 kcal Electronic energy + Delta-G solvation = -30114.766037 eV Core-core repulsion = 26172.402417 eV Total energy + Delta-G solvation = -3942.363620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.12404 -41.43836 -39.53215 -38.69924 -36.37244 -34.53795 -34.04300 -33.42999 -32.27316 -30.99301 -30.50340 -29.27243 -26.33368 -25.76992 -25.14265 -24.55218 -24.06329 -23.12659 -21.28740 -20.92264 -20.11270 -18.99602 -18.91196 -18.51827 -17.58205 -17.17528 -16.89012 -16.25043 -16.03249 -15.85365 -15.49168 -15.35142 -15.11905 -14.95997 -14.85344 -14.57683 -14.32835 -14.25393 -13.83760 -13.47700 -13.42459 -13.19871 -12.88938 -12.79406 -12.74292 -12.61779 -12.30676 -12.20983 -11.95325 -11.90298 -11.89692 -11.75771 -11.55691 -11.43766 -11.37635 -11.02734 -10.94150 -10.84401 -10.64883 -9.83723 -8.99932 -8.25365 -5.19103 -0.37056 0.95583 1.33051 1.60213 1.68760 1.74134 1.84014 1.96042 2.75849 2.80368 3.10284 3.50265 3.56179 3.65407 3.70216 3.82044 3.86143 3.94054 3.95060 4.08429 4.15052 4.26965 4.30441 4.31983 4.38905 4.49572 4.51100 4.61265 4.72627 4.81580 4.85200 4.88755 4.91085 4.92972 4.96554 4.97675 5.05594 5.12432 5.12675 5.16876 5.25600 5.27385 5.39039 5.48439 5.50789 5.75323 6.09459 6.61875 6.64422 6.98316 7.20604 8.11607 8.23294 9.26408 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.002964 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.281349 B = 9444.273536 C = 9597.255234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.193 3.807 3 N -0.736 5.736 4 C -0.300 4.300 5 H 0.067 0.933 6 C -0.107 4.107 7 N -0.983 5.983 8 Si 1.117 2.883 9 H -0.301 1.301 10 H -0.281 1.281 11 H -0.282 1.282 12 C -0.125 4.125 13 C 0.131 3.869 14 N -0.584 5.584 15 C 0.599 3.401 16 O -0.543 6.543 17 C -0.094 4.094 18 O 0.083 5.917 19 N -0.357 5.357 20 C 0.026 3.974 21 C -0.119 4.119 22 C -0.051 4.051 23 C -0.116 4.116 24 C -0.115 4.115 25 C -0.042 4.042 26 C 0.102 3.898 27 C -0.122 4.122 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.359 0.641 32 H 0.243 0.757 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.060 0.940 47 H 0.088 0.912 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.575 -23.783 -5.498 25.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.103 3.897 3 N -0.378 5.378 4 C -0.431 4.431 5 H 0.085 0.915 6 C -0.298 4.298 7 N -0.633 5.633 8 Si 0.944 3.056 9 H -0.227 1.227 10 H -0.208 1.208 11 H -0.208 1.208 12 C -0.165 4.165 13 C 0.009 3.991 14 N -0.315 5.315 15 C 0.386 3.614 16 O -0.423 6.423 17 C -0.157 4.157 18 O 0.021 5.979 19 N -0.066 5.066 20 C -0.136 4.136 21 C -0.124 4.124 22 C -0.089 4.089 23 C -0.154 4.154 24 C -0.153 4.153 25 C -0.080 4.080 26 C -0.020 4.020 27 C -0.160 4.160 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.192 0.808 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.115 0.885 45 H 0.129 0.871 46 H 0.078 0.922 47 H 0.107 0.893 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.532 -22.135 -5.366 23.695 hybrid contribution -0.020 -0.730 -0.166 0.749 sum 6.512 -22.865 -5.532 24.410 Atomic orbital electron populations 1.22103 0.96262 1.00791 1.00978 1.19792 0.92957 0.83794 0.93145 1.42677 1.61130 1.08232 1.25783 1.20144 1.27178 0.94359 1.01457 0.91476 1.26788 0.99802 0.98228 1.05015 1.70992 1.41678 1.38186 1.12405 0.82734 0.75821 0.74213 0.72840 1.22732 1.20767 1.20821 1.22208 0.93805 1.00260 1.00222 1.21455 0.95117 0.98011 0.84512 1.48045 1.41323 1.33045 1.09086 1.16816 0.79419 0.79662 0.85509 1.90793 1.56517 1.64112 1.30836 1.23325 1.05433 1.00159 0.86763 1.85311 1.56838 1.44251 1.11488 1.73411 1.11960 1.05349 1.15873 1.24057 0.99687 0.98305 0.91533 1.21536 0.98126 0.96067 0.96640 1.20239 0.99783 0.94160 0.94687 1.21698 1.01372 0.95194 0.97097 1.21706 0.97066 1.02472 0.94074 1.20469 0.96773 0.92224 0.98552 1.22192 0.95615 0.99270 0.84958 1.22060 0.93767 1.01724 0.98492 0.93849 0.91257 0.94189 0.80847 0.94629 0.91640 0.90762 0.89749 0.92703 0.89464 0.90086 0.88591 0.90987 0.91622 0.87514 0.87425 0.88469 0.87110 0.92190 0.89304 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 8.44 71.98 0.61 -4.16 16 2 C 0.19 6.88 0.74 3.63 0.00 6.88 16 3 N -0.74 -33.68 4.13 -303.22 -1.25 -34.93 16 4 C -0.30 -15.61 8.68 84.03 0.73 -14.88 16 5 H 0.07 3.43 6.70 -2.91 -0.02 3.41 16 6 C -0.11 -6.04 5.50 84.86 0.47 -5.57 16 7 N -0.98 -60.41 13.70 21.65 0.30 -60.11 16 8 Si 1.12 51.75 29.92 68.60 2.05 53.80 16 9 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 C -0.12 -4.26 4.70 30.66 0.14 -4.11 16 13 C 0.13 4.74 6.16 86.35 0.53 5.27 16 14 N -0.58 -19.56 2.97 -822.75 -2.45 -22.00 16 15 C 0.60 19.87 7.69 86.69 0.67 20.53 16 16 O -0.54 -19.84 15.48 -3.99 -0.06 -19.90 16 17 C -0.09 -2.73 6.96 24.03 0.17 -2.56 16 18 O 0.08 2.39 7.82 59.49 0.47 2.85 16 19 N -0.36 -9.64 12.03 -50.87 -0.61 -10.25 16 20 C 0.03 0.57 7.21 43.77 0.32 0.89 16 21 C -0.12 -2.90 6.02 -19.92 -0.12 -3.02 16 22 C -0.05 -0.98 5.57 29.85 0.17 -0.81 16 23 C -0.12 -1.30 5.87 30.79 0.18 -1.12 16 24 C -0.12 -1.08 5.85 30.84 0.18 -0.90 16 25 C -0.04 -0.54 6.32 30.07 0.19 -0.35 16 26 C 0.10 3.22 6.06 86.36 0.52 3.74 16 27 C -0.12 -3.64 4.96 30.68 0.15 -3.49 16 28 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.04 1.47 7.27 -2.39 -0.02 1.45 16 31 H 0.36 17.56 5.29 -92.70 -0.49 17.06 16 32 H 0.24 14.83 6.77 -92.71 -0.63 14.20 16 33 H 0.06 2.41 7.31 -2.38 -0.02 2.39 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.08 2.98 7.03 -2.39 -0.02 2.96 16 36 H 0.05 2.38 7.74 -2.38 -0.02 2.36 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.71 7.91 -2.38 -0.02 1.69 16 39 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 0.77 8.10 -2.39 -0.02 0.75 16 41 H 0.06 0.71 8.10 -2.39 -0.02 0.69 16 42 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.11 3.19 3.83 -44.20 -0.17 3.03 16 46 H 0.06 2.16 6.94 -2.39 -0.02 2.14 16 47 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -67.71 368.53 3.82 -63.89 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.47 Total: 30.30 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 4.91 Total: -3.65 kcal Atomic # 7 Polarization: -123.28 SS G_CDS: -4.01 Total: -127.30 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.40 Total: -17.05 kcal Atomic # 14 Polarization: 51.75 SS G_CDS: 2.05 Total: 53.80 kcal Total: -67.71 3.82 -63.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328003572.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.697 kcal (2) G-P(sol) polarization free energy of solvation -67.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds