Wall clock time and date at job start Tue Mar 31 2020 17:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35922 * 117.00270 * 2 1 4 4 C 1.38851 * 120.40437 * 359.97438 * 3 2 1 5 5 N 1.31880 * 121.00070 * 180.02562 * 4 3 2 6 6 C 1.31687 * 121.93828 * 0.02562 * 5 4 3 7 7 C 1.39528 * 120.69411 * 359.97438 * 6 5 4 8 8 C 1.47850 * 120.52936 * 180.02562 * 7 6 5 9 9 O 1.21558 * 119.99584 * 226.93025 * 8 7 6 10 10 N 1.34775 * 120.00320 * 46.93549 * 8 7 6 11 11 C 1.47429 * 125.64360 * 5.02852 * 10 8 7 12 12 C 1.54912 * 104.82674 * 155.89443 * 11 10 8 13 13 C 1.55159 * 101.58404 * 37.01184 * 12 11 10 14 14 C 1.47015 * 125.64805 * 185.05395 * 10 8 7 15 15 H 1.08992 * 110.01165 * 300.52437 * 14 10 8 16 16 C 1.52998 * 109.88522 * 61.62238 * 14 10 8 17 17 N 1.46502 * 109.46826 * 303.75378 * 16 14 10 18 18 C 1.46497 * 120.00112 * 278.69074 * 17 16 14 19 19 C 1.36939 * 120.00046 * 98.69079 * 17 16 14 20 20 H 1.07994 * 120.00088 * 334.79256 * 19 17 16 21 21 C 1.38813 * 119.99967 * 155.07035 * 19 17 16 22 22 N 1.31625 * 119.99890 * 353.25274 * 21 19 17 23 23 Si 1.86797 * 119.99913 * 173.25419 * 21 19 17 24 24 H 1.48503 * 109.47323 * 60.00204 * 23 21 19 25 25 H 1.48503 * 109.47127 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47437 * 300.00044 * 23 21 19 27 27 C 1.38843 * 120.40516 * 180.32328 * 3 2 1 28 28 C 1.50704 * 120.88161 * 359.97438 * 27 3 2 29 29 H 1.08998 * 109.47403 * 300.00720 * 1 2 3 30 30 H 1.09007 * 109.46766 * 60.00546 * 1 2 3 31 31 H 1.08998 * 109.47618 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.49857 * 0.02731 * 4 3 2 33 33 H 1.08000 * 119.65015 * 180.02562 * 6 5 4 34 34 H 1.08990 * 110.36864 * 37.05802 * 11 10 8 35 35 H 1.09004 * 110.36282 * 274.72853 * 11 10 8 36 36 H 1.08993 * 111.00613 * 278.93131 * 12 11 10 37 37 H 1.09000 * 111.00043 * 155.08154 * 12 11 10 38 38 H 1.08999 * 110.71465 * 206.13809 * 13 12 11 39 39 H 1.08992 * 110.87599 * 82.93081 * 13 12 11 40 40 H 1.09000 * 109.47612 * 183.75632 * 16 14 10 41 41 H 1.08998 * 109.47397 * 63.75007 * 16 14 10 42 42 H 1.09002 * 109.47329 * 269.36531 * 18 17 16 43 43 H 1.09004 * 109.47153 * 29.36282 * 18 17 16 44 44 H 1.09003 * 109.47444 * 149.36380 * 18 17 16 45 45 H 0.96998 * 119.99437 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.46830 * 263.72046 * 28 27 3 47 47 H 1.08997 * 109.47015 * 23.71604 * 28 27 3 48 48 H 1.09000 * 109.47323 * 143.71862 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3809 -0.0005 5 7 1.8847 3.5621 -0.0010 6 6 3.1954 3.6890 -0.0016 7 6 4.0200 2.5635 -0.0011 8 6 5.4912 2.7102 -0.0011 9 8 6.1673 2.0549 -0.7699 10 7 6.0827 3.5705 0.8512 11 6 5.3984 4.3457 1.9022 12 6 6.4997 4.6560 2.9464 13 6 7.7327 4.8985 2.0362 14 6 7.5169 3.8917 0.8866 15 1 8.0971 2.9878 1.0717 16 6 7.9424 4.5200 -0.4419 17 7 7.6029 3.6136 -1.5416 18 6 8.4857 2.4896 -1.8635 19 6 6.4605 3.8169 -2.2687 20 1 5.6264 4.3427 -1.8282 21 6 6.3724 3.3421 -3.5702 22 7 7.4292 2.8151 -4.1514 23 14 4.7539 3.4511 -4.4965 24 1 4.3403 4.8732 -4.6048 25 1 4.9226 2.8793 -5.8566 26 1 3.7121 2.6869 -3.7645 27 6 3.4321 1.2935 -0.0068 28 6 4.2810 0.0483 -0.0136 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 0.2197 2.3226 -0.0005 33 1 3.6367 4.6748 -0.0016 34 1 4.6034 3.7527 2.3541 35 1 4.9953 5.2706 1.4896 36 1 6.6631 3.8045 3.6069 37 1 6.2546 5.5508 3.5186 38 1 8.6564 4.6798 2.5720 39 1 7.7409 5.9205 1.6575 40 1 9.0184 4.6940 -0.4335 41 1 7.4220 5.4680 -0.5787 42 1 9.2197 2.8048 -2.6051 43 1 8.9999 2.1612 -0.9602 44 1 7.8944 1.6664 -2.2647 45 1 7.3675 2.4830 -5.0607 46 1 4.5836 -0.1907 1.0059 47 1 3.7062 -0.7810 -0.4258 48 1 5.1671 0.2160 -0.6258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328734023.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:38 Heat of formation + Delta-G solvation = 28.222269 kcal Electronic energy + Delta-G solvation = -31400.064279 eV Core-core repulsion = 27457.978927 eV Total energy + Delta-G solvation = -3942.085352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.76124 -39.47067 -37.93405 -36.64672 -35.01055 -33.36271 -31.71127 -31.22358 -29.99667 -28.95609 -27.73693 -27.46790 -25.69261 -25.01981 -23.99542 -22.32211 -22.17593 -20.77093 -20.46558 -18.69626 -17.60138 -17.24206 -16.78627 -16.19305 -16.02285 -15.83585 -15.67509 -14.78446 -14.57394 -14.15507 -13.81543 -13.63908 -13.39328 -13.25673 -12.91719 -12.76501 -12.74291 -12.54529 -12.43104 -12.10841 -11.92415 -11.78129 -11.57994 -11.45823 -11.40519 -11.18761 -11.05213 -10.68400 -10.63694 -10.50466 -10.33336 -9.95391 -9.77527 -9.63485 -9.60433 -9.05428 -8.63326 -8.40840 -8.29169 -7.77583 -6.24277 -5.49499 -2.89584 1.05096 1.42372 3.07499 3.45653 3.51282 3.52624 3.57304 3.73774 4.06075 4.53499 4.64898 4.69419 4.79432 4.86062 4.89126 4.99209 5.01754 5.10153 5.16209 5.30005 5.42980 5.54145 5.59763 5.62201 5.72393 5.78013 5.80292 5.85648 5.94701 5.99563 6.04557 6.12695 6.16253 6.29078 6.36118 6.38565 6.50614 6.59581 6.71644 6.90113 7.10075 7.16013 7.21325 7.76837 7.90049 8.04486 8.11154 8.33655 8.65602 9.21157 9.48758 10.12880 10.62254 11.55540 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009956 B = 0.006338 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.773832 B = 4417.077927 C = 6019.421933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.065 3.935 4 C 0.022 3.978 5 N -0.458 5.458 6 C 0.094 3.906 7 C -0.113 4.113 8 C 0.556 3.444 9 O -0.425 6.425 10 N -0.609 5.609 11 C 0.102 3.898 12 C -0.130 4.130 13 C -0.126 4.126 14 C 0.118 3.882 15 H 0.062 0.938 16 C 0.142 3.858 17 N -0.584 5.584 18 C 0.185 3.815 19 C -0.206 4.206 20 H 0.051 0.949 21 C 0.008 3.992 22 N -0.907 5.907 23 Si 0.887 3.113 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.287 1.287 27 C -0.030 4.030 28 C -0.121 4.121 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.037 0.963 41 H 0.049 0.951 42 H 0.009 0.991 43 H -0.018 1.018 44 H 0.058 0.942 45 H 0.248 0.752 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.534 -0.977 15.341 17.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.018 3.982 4 C -0.136 4.136 5 N -0.168 5.168 6 C -0.064 4.064 7 C -0.118 4.118 8 C 0.341 3.659 9 O -0.292 6.292 10 N -0.347 5.347 11 C -0.022 4.022 12 C -0.169 4.169 13 C -0.165 4.165 14 C 0.011 3.989 15 H 0.080 0.920 16 C 0.012 3.988 17 N -0.305 5.305 18 C 0.041 3.959 19 C -0.336 4.336 20 H 0.069 0.931 21 C -0.190 4.190 22 N -0.553 5.553 23 Si 0.718 3.282 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.214 1.214 27 C -0.039 4.039 28 C -0.177 4.177 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.172 0.828 33 H 0.177 0.823 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.028 0.972 43 H 0.000 1.000 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.599 -1.004 14.586 16.961 hybrid contribution -0.985 -0.425 -0.646 1.252 sum -9.583 -1.430 13.939 16.976 Atomic orbital electron populations 1.23077 0.78491 1.04047 1.01395 1.86070 1.21129 1.25961 1.88919 1.19709 0.92399 0.85722 1.00378 1.22864 1.00210 0.87299 1.03221 1.67471 1.12200 1.25893 1.11215 1.22820 0.88219 0.98522 0.96876 1.20935 0.96230 0.93119 1.01523 1.17011 0.85294 0.82249 0.81378 1.90926 1.62872 1.41724 1.33687 1.48034 1.08061 1.44236 1.34392 1.22217 0.95488 0.95771 0.88728 1.22713 0.95486 1.01621 0.97042 1.22657 0.97893 0.99967 0.95979 1.22476 0.81627 0.97408 0.97349 0.91967 1.21091 0.97037 0.93209 0.87415 1.43659 1.25060 1.27522 1.34270 1.20557 0.92316 0.90488 0.92535 1.18742 0.91409 1.31079 0.92329 0.93109 1.24820 0.96163 1.01662 0.96317 1.70021 1.27049 1.45368 1.12893 0.86592 0.84625 0.77561 0.79461 1.21315 1.21731 1.21382 1.19697 0.90579 0.95832 0.97810 1.20866 1.00660 0.93269 1.02908 0.92603 0.92553 0.88111 0.82761 0.82327 0.91818 0.92141 0.91147 0.90553 0.90862 0.90678 0.94485 0.93227 0.97238 0.99993 0.92367 0.94162 0.91325 0.91120 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.82 101.05 0.99 1.21 16 2 O -0.31 -4.26 9.57 -19.49 -0.19 -4.44 16 3 C 0.07 1.04 6.68 -39.13 -0.26 0.78 16 4 C 0.02 0.33 10.21 -17.30 -0.18 0.15 16 5 N -0.46 -7.80 10.34 -12.79 -0.13 -7.93 16 6 C 0.09 1.67 9.62 -17.13 -0.16 1.51 16 7 C -0.11 -2.14 5.14 -104.84 -0.54 -2.68 16 8 C 0.56 11.38 4.57 -12.33 -0.06 11.33 16 9 O -0.42 -10.32 8.79 5.31 0.05 -10.28 16 10 N -0.61 -10.60 3.06 -164.12 -0.50 -11.11 16 11 C 0.10 1.35 5.46 -2.53 -0.01 1.33 16 12 C -0.13 -1.39 7.08 -24.58 -0.17 -1.56 16 13 C -0.13 -1.53 6.48 -24.89 -0.16 -1.69 16 14 C 0.12 1.99 3.30 -66.95 -0.22 1.77 16 15 H 0.06 1.14 8.04 -51.93 -0.42 0.73 16 16 C 0.14 2.89 5.29 -4.04 -0.02 2.86 16 17 N -0.58 -14.83 1.69 -181.12 -0.31 -15.14 16 18 C 0.19 4.88 7.72 59.85 0.46 5.34 16 19 C -0.21 -5.69 6.00 -15.06 -0.09 -5.78 16 20 H 0.05 1.41 7.00 -52.49 -0.37 1.04 16 21 C 0.01 0.22 5.19 -17.43 -0.09 0.13 16 22 N -0.91 -27.75 10.53 55.49 0.58 -27.16 16 23 Si 0.89 23.59 29.56 -169.99 -5.02 18.57 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 26 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 27 C -0.03 -0.54 5.96 -103.76 -0.62 -1.16 16 28 C -0.12 -2.05 9.43 36.01 0.34 -1.71 16 29 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 30 H 0.06 0.47 7.67 -51.92 -0.40 0.07 16 31 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.16 1.78 6.30 -52.48 -0.33 1.45 16 33 H 0.16 2.66 6.85 -52.49 -0.36 2.30 16 34 H 0.06 0.81 7.59 -51.93 -0.39 0.42 16 35 H 0.06 0.77 7.36 -51.93 -0.38 0.39 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.87 7.79 -51.93 -0.40 0.47 16 40 H 0.04 0.72 8.13 -51.93 -0.42 0.30 16 41 H 0.05 1.01 7.88 -51.93 -0.41 0.61 16 42 H 0.01 0.27 7.59 -51.93 -0.39 -0.13 16 43 H -0.02 -0.44 7.96 -51.93 -0.41 -0.86 16 44 H 0.06 1.70 6.24 -51.93 -0.32 1.38 16 45 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.07 1.11 7.44 -51.93 -0.39 0.73 16 48 H 0.10 2.04 5.83 -51.93 -0.30 1.74 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -34.36 369.19 -8.11 -42.47 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -7.35 Total: -2.36 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -0.80 Total: 11.82 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -0.36 Total: -61.34 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.14 Total: -14.72 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.02 Total: 18.57 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.36 -8.11 -42.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328734023.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.691 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds