Wall clock time and date at job start Tue Mar 31 2020 17:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35922 * 117.00270 * 2 1 4 4 C 1.38851 * 120.40437 * 359.97438 * 3 2 1 5 5 N 1.31880 * 121.00070 * 180.02562 * 4 3 2 6 6 C 1.31687 * 121.93828 * 0.02562 * 5 4 3 7 7 C 1.39528 * 120.69411 * 359.97438 * 6 5 4 8 8 C 1.47850 * 120.52936 * 180.02562 * 7 6 5 9 9 O 1.21558 * 119.99584 * 226.93025 * 8 7 6 10 10 N 1.34775 * 120.00320 * 46.93549 * 8 7 6 11 11 C 1.47429 * 125.64360 * 5.02852 * 10 8 7 12 12 C 1.54912 * 104.82674 * 155.89443 * 11 10 8 13 13 C 1.55159 * 101.58404 * 37.01184 * 12 11 10 14 14 C 1.47015 * 125.64805 * 185.05395 * 10 8 7 15 15 H 1.08992 * 110.01165 * 300.52437 * 14 10 8 16 16 C 1.52998 * 109.88522 * 61.62238 * 14 10 8 17 17 N 1.46502 * 109.46826 * 303.75378 * 16 14 10 18 18 C 1.46497 * 120.00112 * 278.69074 * 17 16 14 19 19 C 1.36939 * 120.00046 * 98.69079 * 17 16 14 20 20 H 1.07994 * 120.00088 * 334.79256 * 19 17 16 21 21 C 1.38813 * 119.99967 * 155.07035 * 19 17 16 22 22 N 1.31625 * 119.99890 * 353.25274 * 21 19 17 23 23 Si 1.86797 * 119.99913 * 173.25419 * 21 19 17 24 24 H 1.48503 * 109.47323 * 60.00204 * 23 21 19 25 25 H 1.48503 * 109.47127 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47437 * 300.00044 * 23 21 19 27 27 C 1.38843 * 120.40516 * 180.32328 * 3 2 1 28 28 C 1.50704 * 120.88161 * 359.97438 * 27 3 2 29 29 H 1.08998 * 109.47403 * 300.00720 * 1 2 3 30 30 H 1.09007 * 109.46766 * 60.00546 * 1 2 3 31 31 H 1.08998 * 109.47618 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.49857 * 0.02731 * 4 3 2 33 33 H 1.08000 * 119.65015 * 180.02562 * 6 5 4 34 34 H 1.08990 * 110.36864 * 37.05802 * 11 10 8 35 35 H 1.09004 * 110.36282 * 274.72853 * 11 10 8 36 36 H 1.08993 * 111.00613 * 278.93131 * 12 11 10 37 37 H 1.09000 * 111.00043 * 155.08154 * 12 11 10 38 38 H 1.08999 * 110.71465 * 206.13809 * 13 12 11 39 39 H 1.08992 * 110.87599 * 82.93081 * 13 12 11 40 40 H 1.09000 * 109.47612 * 183.75632 * 16 14 10 41 41 H 1.08998 * 109.47397 * 63.75007 * 16 14 10 42 42 H 1.09002 * 109.47329 * 269.36531 * 18 17 16 43 43 H 1.09004 * 109.47153 * 29.36282 * 18 17 16 44 44 H 1.09003 * 109.47444 * 149.36380 * 18 17 16 45 45 H 0.96998 * 119.99437 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.46830 * 263.72046 * 28 27 3 47 47 H 1.08997 * 109.47015 * 23.71604 * 28 27 3 48 48 H 1.09000 * 109.47323 * 143.71862 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3809 -0.0005 5 7 1.8847 3.5621 -0.0010 6 6 3.1954 3.6890 -0.0016 7 6 4.0200 2.5635 -0.0011 8 6 5.4912 2.7102 -0.0011 9 8 6.1673 2.0549 -0.7699 10 7 6.0827 3.5705 0.8512 11 6 5.3984 4.3457 1.9022 12 6 6.4997 4.6560 2.9464 13 6 7.7327 4.8985 2.0362 14 6 7.5169 3.8917 0.8866 15 1 8.0971 2.9878 1.0717 16 6 7.9424 4.5200 -0.4419 17 7 7.6029 3.6136 -1.5416 18 6 8.4857 2.4896 -1.8635 19 6 6.4605 3.8169 -2.2687 20 1 5.6264 4.3427 -1.8282 21 6 6.3724 3.3421 -3.5702 22 7 7.4292 2.8151 -4.1514 23 14 4.7539 3.4511 -4.4965 24 1 4.3403 4.8732 -4.6048 25 1 4.9226 2.8793 -5.8566 26 1 3.7121 2.6869 -3.7645 27 6 3.4321 1.2935 -0.0068 28 6 4.2810 0.0483 -0.0136 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 0.2197 2.3226 -0.0005 33 1 3.6367 4.6748 -0.0016 34 1 4.6034 3.7527 2.3541 35 1 4.9953 5.2706 1.4896 36 1 6.6631 3.8045 3.6069 37 1 6.2546 5.5508 3.5186 38 1 8.6564 4.6798 2.5720 39 1 7.7409 5.9205 1.6575 40 1 9.0184 4.6940 -0.4335 41 1 7.4220 5.4680 -0.5787 42 1 9.2197 2.8048 -2.6051 43 1 8.9999 2.1612 -0.9602 44 1 7.8944 1.6664 -2.2647 45 1 7.3675 2.4830 -5.0607 46 1 4.5836 -0.1907 1.0059 47 1 3.7062 -0.7810 -0.4258 48 1 5.1671 0.2160 -0.6258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328734023.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:37 Heat of formation + Delta-G solvation = 5.698409 kcal Electronic energy + Delta-G solvation = -31401.040987 eV Core-core repulsion = 27457.978927 eV Total energy + Delta-G solvation = -3943.062059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.04249 -40.80782 -39.08287 -38.06900 -36.93324 -34.70826 -33.42464 -32.74384 -31.25819 -30.49873 -28.89680 -28.46917 -27.84276 -26.57577 -25.36106 -23.73163 -23.49246 -22.32346 -21.74509 -20.03712 -18.87749 -18.80023 -18.41149 -17.44040 -17.39527 -16.93954 -16.87162 -16.83950 -16.04806 -15.55650 -15.23577 -15.07331 -14.90951 -14.77965 -14.26523 -14.15403 -13.96763 -13.81427 -13.76317 -13.53297 -13.36766 -13.19029 -12.96939 -12.95754 -12.76697 -12.74408 -12.40215 -12.38104 -12.32651 -12.02150 -11.90594 -11.74410 -11.60418 -11.46451 -10.99898 -10.56419 -10.35045 -10.14981 -9.50828 -9.42038 -8.25209 -7.66765 -5.08554 -0.26371 0.11168 1.32413 1.36329 1.39547 1.97660 2.08870 2.46048 2.52945 2.68373 3.37411 3.45857 3.49607 3.60710 3.69544 3.77896 3.84802 4.03894 4.15661 4.19828 4.26035 4.35653 4.37459 4.40785 4.50564 4.57387 4.61571 4.68530 4.71835 4.72667 4.78606 4.91135 4.99930 5.02342 5.06766 5.08650 5.17743 5.21498 5.28614 5.39100 5.49836 5.55236 5.68011 5.77700 5.95117 6.14797 6.47860 6.75010 6.90141 7.31769 7.69188 8.05868 8.50216 9.36902 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009956 B = 0.006338 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.773832 B = 4417.077927 C = 6019.421933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.071 3.929 4 C 0.030 3.970 5 N -0.465 5.465 6 C 0.088 3.912 7 C -0.134 4.134 8 C 0.557 3.443 9 O -0.480 6.480 10 N -0.611 5.611 11 C 0.094 3.906 12 C -0.116 4.116 13 C -0.114 4.114 14 C 0.120 3.880 15 H 0.045 0.955 16 C 0.138 3.862 17 N -0.596 5.596 18 C 0.211 3.789 19 C -0.176 4.176 20 H 0.049 0.951 21 C -0.053 4.053 22 N -0.944 5.944 23 Si 0.934 3.066 24 H -0.276 1.276 25 H -0.297 1.297 26 H -0.298 1.298 27 C -0.055 4.055 28 C -0.110 4.110 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.125 0.875 32 H 0.195 0.805 33 H 0.164 0.836 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.050 0.950 42 H -0.017 1.017 43 H 0.002 0.998 44 H 0.021 0.979 45 H 0.237 0.763 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.773 0.311 18.419 21.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.233 6.233 3 C 0.024 3.976 4 C -0.128 4.128 5 N -0.175 5.175 6 C -0.069 4.069 7 C -0.139 4.139 8 C 0.343 3.657 9 O -0.352 6.352 10 N -0.348 5.348 11 C -0.028 4.028 12 C -0.154 4.154 13 C -0.153 4.153 14 C 0.014 3.986 15 H 0.063 0.937 16 C 0.011 3.989 17 N -0.318 5.318 18 C 0.066 3.934 19 C -0.307 4.307 20 H 0.067 0.933 21 C -0.246 4.246 22 N -0.594 5.594 23 Si 0.765 3.235 24 H -0.202 1.202 25 H -0.224 1.224 26 H -0.226 1.226 27 C -0.064 4.064 28 C -0.167 4.167 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.144 0.856 32 H 0.212 0.788 33 H 0.181 0.819 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.128 0.872 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.001 0.999 43 H 0.020 0.980 44 H 0.039 0.961 45 H 0.047 0.953 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.862 0.348 17.747 20.810 hybrid contribution -0.449 -0.900 -1.388 1.714 sum -11.311 -0.553 16.359 19.896 Atomic orbital electron populations 1.23503 0.75651 1.06311 1.02770 1.86073 1.23989 1.24840 1.88374 1.19715 0.91740 0.86981 0.99212 1.23483 1.01939 0.86322 1.01084 1.67539 1.11636 1.26817 1.11488 1.22844 0.88591 0.98266 0.97229 1.20912 0.95502 0.94127 1.03370 1.17431 0.85999 0.81602 0.80690 1.90929 1.64099 1.43979 1.36184 1.48175 1.08699 1.43442 1.34442 1.22505 0.96470 0.95502 0.88309 1.22718 0.93110 1.03414 0.96133 1.22629 0.99736 0.98705 0.94213 1.22323 0.81315 0.97825 0.97163 0.93702 1.21358 0.97875 0.92495 0.87200 1.43803 1.24361 1.28157 1.35459 1.20094 0.91178 0.89794 0.92311 1.18809 0.91765 1.28479 0.91654 0.93297 1.25337 0.98210 1.03406 0.97625 1.70165 1.28409 1.48219 1.12628 0.85816 0.81964 0.77626 0.78074 1.20204 1.22375 1.22566 1.19920 0.92054 0.95660 0.98764 1.20714 0.99278 0.93572 1.03091 0.90483 0.91756 0.85646 0.78841 0.81894 0.91324 0.91240 0.90513 0.87182 0.88628 0.89573 0.93363 0.93140 0.99870 0.98007 0.96055 0.95293 0.89896 0.90289 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.82 113.37 1.11 1.27 16 2 O -0.32 -8.10 9.57 -92.67 -0.89 -8.98 16 3 C 0.07 2.15 6.68 22.56 0.15 2.30 16 4 C 0.03 0.81 10.21 84.83 0.87 1.68 16 5 N -0.47 -14.86 10.34 -194.39 -2.01 -16.87 16 6 C 0.09 3.05 9.62 85.03 0.82 3.87 16 7 C -0.13 -5.08 5.14 -20.01 -0.10 -5.19 16 8 C 0.56 23.19 4.57 86.79 0.40 23.58 16 9 O -0.48 -24.43 8.79 -3.90 -0.03 -24.46 16 10 N -0.61 -20.76 3.06 -791.42 -2.43 -23.18 16 11 C 0.09 2.25 5.46 86.86 0.47 2.73 16 12 C -0.12 -1.97 7.08 31.99 0.23 -1.74 16 13 C -0.11 -2.34 6.48 31.79 0.21 -2.13 16 14 C 0.12 3.88 3.30 45.34 0.15 4.03 16 15 H 0.04 1.62 8.04 -2.39 -0.02 1.61 16 16 C 0.14 5.53 5.29 86.38 0.46 5.99 16 17 N -0.60 -31.02 1.69 -726.94 -1.23 -32.25 16 18 C 0.21 11.63 7.72 127.77 0.99 12.62 16 19 C -0.18 -9.99 6.00 84.03 0.50 -9.49 16 20 H 0.05 2.76 7.00 -2.91 -0.02 2.74 16 21 C -0.05 -3.23 5.19 84.86 0.44 -2.78 16 22 N -0.94 -60.70 10.53 21.65 0.23 -60.48 16 23 Si 0.93 50.21 29.56 68.60 2.03 52.23 16 24 H -0.28 -14.12 7.11 99.48 0.71 -13.42 16 25 H -0.30 -16.09 7.11 99.48 0.71 -15.38 16 26 H -0.30 -16.31 7.11 99.48 0.71 -15.60 16 27 C -0.06 -1.98 5.96 -19.30 -0.12 -2.09 16 28 C -0.11 -3.85 9.43 71.24 0.67 -3.18 16 29 H 0.08 0.79 7.67 -2.39 -0.02 0.77 16 30 H 0.06 0.83 7.67 -2.38 -0.02 0.81 16 31 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.19 3.62 6.30 -2.91 -0.02 3.60 16 33 H 0.16 5.29 6.85 -2.91 -0.02 5.27 16 34 H 0.07 1.59 7.59 -2.39 -0.02 1.57 16 35 H 0.07 1.56 7.36 -2.38 -0.02 1.55 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.09 1.64 7.79 -2.39 -0.02 1.62 16 40 H 0.05 1.82 8.13 -2.39 -0.02 1.81 16 41 H 0.05 2.01 7.88 -2.39 -0.02 1.99 16 42 H -0.02 -1.01 7.59 -2.39 -0.02 -1.02 16 43 H 0.00 0.08 7.96 -2.38 -0.02 0.06 16 44 H 0.02 1.30 6.24 -2.39 -0.01 1.29 16 45 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 46 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 47 H 0.08 2.53 7.44 -2.39 -0.02 2.52 16 48 H 0.07 2.86 5.83 -2.39 -0.01 2.84 16 Total: -1.00 -79.72 369.19 3.87 -75.84 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.96 Total: 6.69 kcal Atomic # 6 Polarization: 24.21 SS G_CDS: 7.24 Total: 31.46 kcal Atomic # 7 Polarization: -127.33 SS G_CDS: -5.44 Total: -132.77 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.92 Total: -33.45 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.03 Total: 52.23 kcal Total: -79.72 3.87 -75.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328734023.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.542 kcal (2) G-P(sol) polarization free energy of solvation -79.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds